mRNA_H-elongata_contig53945.12759.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: D7G1P5_ECTSI (26S proteasome regulatory ATPase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P5_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.060e-58 Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGRAHIL+IHSKSMNVDRDIRYEL+ARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN
Sbjct: 86 KVEFGLPDLEGRAHILSIHSKSMNVDRDIRYELVARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 179
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A6H5JJZ9_9PHAE (AAA domain-containing protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5JJZ9_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.770e-55 Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGRAHIL IHSKSMNVDRDIRYEL+ARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN
Sbjct: 343 KVEFGLPDLEGRAHILGIHSKSMNVDRDIRYELVARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 436
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A7R9UDP4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7R9UDP4_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.060e-54 Identity = 85/94 (90.43%), Postives = 92/94 (97.87%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGRAHIL IH+K+M+VDR+IRYELIARLCPNTTGAELRSVCTEAGMFAIRAR+KSISEKDFL+AVNKVIKGY KFSSTPKYMVYN
Sbjct: 67 KVEFGLPDLEGRAHILKIHAKTMSVDRNIRYELIARLCPNTTGAELRSVCTEAGMFAIRARRKSISEKDFLEAVNKVIKGYHKFSSTPKYMVYN 160
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: K0RTL2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTL2_THAOC) HSP 1 Score: 173 bits (439), Expect = 1.580e-53 Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGR HIL IHSK MN DRDIR+ELIARLCPNTTGAEL SVCTEAGMFAIRAR+KS+SEKDFLD+VNKV+KGY+KFSSTPKYMVYN
Sbjct: 86 KVEFGLPDLEGRGHILKIHSKKMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFAIRARRKSVSEKDFLDSVNKVVKGYKKFSSTPKYMVYN 179
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A7S2SSE9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSE9_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.040e-52 Identity = 80/94 (85.11%), Postives = 90/94 (95.74%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGR HIL IH+K M+VDRDIRYEL+ARLCPNTTGAELRSVCTEAGMFAIRAR+K+I+EKD LD++NKVIKGYQKFS+TPKYMVYN
Sbjct: 68 KVEFGLPDLEGRTHILKIHAKRMSVDRDIRYELLARLCPNTTGAELRSVCTEAGMFAIRARRKAITEKDMLDSINKVIKGYQKFSATPKYMVYN 161
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A836CGS4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS4_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.190e-52 Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGRAHIL IHSKSMNVDR IRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISE+DFL+AVNKVIKGY KFSSTPKYMVYN
Sbjct: 343 KVEFGLPDLEGRAHILTIHSKSMNVDRGIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEQDFLEAVNKVIKGYSKFSSTPKYMVYN 436
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A6V1T8U9_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1T8U9_HETAK) HSP 1 Score: 174 bits (441), Expect = 7.220e-51 Identity = 83/94 (88.30%), Postives = 91/94 (96.81%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGR HIL IH+++M+VDRDIRYEL+ARLCPNTTGAELRSVCTEAGMFAIRAR+KSI+EKDFLDAV KVIKGYQKFSSTPKYMVYN
Sbjct: 343 KVEFGLPDLEGRTHILKIHTRAMSVDRDIRYELLARLCPNTTGAELRSVCTEAGMFAIRARRKSITEKDFLDAVQKVIKGYQKFSSTPKYMVYN 436
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A7S2I8S2_9STRA (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S2I8S2_9STRA) HSP 1 Score: 172 bits (435), Expect = 9.210e-51 Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGR HIL IHSK MN DRDIR+ELIARLCPNTTGAEL SVCTEAGMF+IRAR+KS+SEKDFLD+VNKV+KGY+KFSSTPKYMVYN
Sbjct: 263 KVEFGLPDLEGRGHILKIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFSIRARRKSVSEKDFLDSVNKVVKGYKKFSSTPKYMVYN 356
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A482SHN7_9ARCH (26S protease regulatory subunit n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482SHN7_9ARCH) HSP 1 Score: 172 bits (435), Expect = 2.010e-50 Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEF LPDLEGR HIL IH+K+M+VDRDIRYEL+ARLCPNTTGAELRSVCTEAGM+AIRAR+KS SEKDFLD++NKVIKGYQKFSSTPKYMVYN
Sbjct: 296 KVEFALPDLEGRTHILKIHAKTMSVDRDIRYELLARLCPNTTGAELRSVCTEAGMYAIRARRKSASEKDFLDSINKVIKGYQKFSSTPKYMVYN 389
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Match: A0A7S2PIH2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PIH2_9STRA) HSP 1 Score: 172 bits (436), Expect = 5.310e-50 Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1
Query: 1 QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 282
+VEFGLPDLEGR HIL IHSK MN DRDIRYEL+ARLCPNTTGAEL SVCTEAGMFAIRAR+KS+SEKDFLD+V+KVIKGY+KFSSTPKYMVYN
Sbjct: 357 KVEFGLPDLEGRTHILKIHSKRMNCDRDIRYELLARLCPNTTGAELHSVCTEAGMFAIRARRKSVSEKDFLDSVSKVIKGYKKFSSTPKYMVYN 450 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53945.12759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53945.12759.1 >prot_H-elongata_contig53945.12759.1 ID=prot_H-elongata_contig53945.12759.1|Name=mRNA_H-elongata_contig53945.12759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp QVEFGLPDLEGRAHILNIHSKSMNVDRDIRYELIARLCPNTTGAELRSVCback to top mRNA from alignment at H-elongata_contig53945:3167..3451- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53945.12759.1 ID=mRNA_H-elongata_contig53945.12759.1|Name=mRNA_H-elongata_contig53945.12759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig53945:3167..3451- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53945:3167..3451- >mRNA_H-elongata_contig53945.12759.1 ID=mRNA_H-elongata_contig53945.12759.1|Name=mRNA_H-elongata_contig53945.12759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig53945:3167..3451- (Himanthalia elongata Himel1 dioecious)back to top |