mRNA_H-elongata_contig53937.12757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53937.12757.1
Unique NamemRNA_H-elongata_contig53937.12757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: D8LPN6_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN6_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 8.960e-78
Identity = 137/165 (83.03%), Postives = 149/165 (90.30%), Query Frame = 1
Query:    4 ALLAAAAATTSQILPHAAVAA-ENTLPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKKTTW 495
            ALLA A A + Q+LPHAAVAA E  +P+ SAAV   LVE+LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVL+GLAFHSVPSVFTSGLPLDD+IAAAAFLYFG+ TLKDAY LP DSN+GI EE+AEAEES+KE+EGKKT W
Sbjct:   95 ALLALAGAVSCQLLPHAAVAATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 259          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A6H5L6M0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M0_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.250e-76
Identity = 137/165 (83.03%), Postives = 149/165 (90.30%), Query Frame = 1
Query:    4 ALLAAAAATTSQILPHAAVAA-ENTLPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKKTTW 495
            ALLA A A + Q+LPHAAVAA E  +P+ SAAV   LVE+LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVL+GLAFHSVPSVFTSGLPLDD+IAAAAFLYFG+ TLKDAY LP DSN+GI EE+AEAEES+KE+EGKKT W
Sbjct:   94 ALLALAGAVSCQLLPHAAVAATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 258          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A836CPU7_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.720e-43
Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 1
Query:   10 LAAAAATTSQILPHAAVAAENTLPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKA 447
            L AA A  S  LP AA AA      ++ A+    + + TS+GF QAFSLVFVSEIGDKTFFIA LLAAKTSRLISFAGS+ AL+VMTVL+ L+G+AFHSVPS  T+G+P DD IA AAFLYFG++TL+DA ++P D N G+  E A
Sbjct:  100 LVAAVALLSHALPAAAAAAVTAGAPLTGAIADGTLTEATSNGFVQAFSLVFVSEIGDKTFFIAGLLAAKTSRLISFAGSIAALSVMTVLSCLIGVAFHSVPSTLTNGIPFDDYIAVAAFLYFGLVTLRDASQIPDDDNSGMEAEAA 245          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S2U7L4_9STRA (GDT1 family protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7L4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.760e-36
Identity = 75/130 (57.69%), Postives = 101/130 (77.69%), Query Frame = 1
Query:  112 VEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKK--TTW 495
            ++ L+ +GF+QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+GALAVMT+++VL+G  FH+VPS  + GLPLDD+ A AAF +FG+ TLK+A ++  +    ++EE A+AEE+++  +  K  T W
Sbjct:  156 LDSLSQTGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFIGSIGALAVMTIISVLIGQIFHAVPSGLSQGLPLDDIAAVAAFAFFGIKTLKEAIEMDEEGVSAMDEEFADAEEAVEGSDSIKQITAW 285          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: W7TMF8_9STRA (GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF8_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.770e-36
Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  109 LVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEG--KKTTW 495
            +V KL +SGF QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+ AL+VMT+++VL+G AFH++P     G   D  +A AAF YFG+ TLKD+Y +    + G++EE+AEAE++++E     ++T W
Sbjct:  164 VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPW 294          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S2HML6_9STRA (GDT1 family protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HML6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.060e-35
Identity = 79/140 (56.43%), Postives = 102/140 (72.86%), Query Frame = 1
Query:   91 AAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEG---INEEKAEAEESIKEIEG--KKTTW 495
            AA  S  +EK+  +GF+QAFSLVFVSEIGDKTFFIA LLA KTSR +S  GSVGALAVMT+++VL+G  FH+VPS    G+PLDDV A  AF +FG  TLK+++    D  EG   ++EE AEAEE+++E +   ++T W
Sbjct:  137 AASASSFMEKVAETGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRFVSLVGSVGALAVMTIISVLIGQIFHAVPSGIAQGIPLDDVAAVLAFAFFGFKTLKESF----DMEEGESVMDEELAEAEETVEESDTIRQRTAW 272          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S1CXU9_CYCTE (GDT1 family protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXU9_CYCTE)

HSP 1 Score: 133 bits (334), Expect = 9.190e-35
Identity = 72/125 (57.60%), Postives = 98/125 (78.40%), Query Frame = 1
Query:   91 AAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESI 465
            A+  + L + LT +GF+QAFSLVF+SEIGDKTFFIA LLA KTSR++S+ GS+GALAVMT+L+VL+G  FH+VP+    G+PLDDV A  AF +FG+ TLK+A ++  D +  ++EE AEAEE++
Sbjct:  110 ASTAASLFDSLTETGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRVVSYLGSMGALAVMTILSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFAFFGLKTLKEAIEMDSDGST-MDEEFAEAEETV 233          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A8J6C509_DIALT (GDT1 family protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C509_DIALT)

HSP 1 Score: 132 bits (333), Expect = 1.190e-34
Identity = 71/140 (50.71%), Postives = 98/140 (70.00%), Query Frame = 1
Query:   76 LPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKKTTW 495
            L    A++  P+   L  S FFQA SL+FVS++GDKTFFIA +LAAKTSRL++F G+ GALAVMTV++V +G  FH+VP+ FT G+P+DD+IA A+F YFG+ +L DA  +    + G+  E+ EAEE +  I  K+  W
Sbjct:   93 LASAGASLVEPVTRSLLDSPFFQALSLIFVSDLGDKTFFIATILAAKTSRLLTFVGAAGALAVMTVISVAIGQVFHAVPTGFTRGIPIDDIIAIASFSYFGLKSLADAAAIEDGDDSGMAAEQREAEEELAAIGDKRGRW 232          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S1FYG6_9STRA (GDT1 family protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYG6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.700e-34
Identity = 76/139 (54.68%), Postives = 100/139 (71.94%), Query Frame = 1
Query:   85 VSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESIKEIEGKK--TTW 495
            ++ A  +  +E   S+GF+QAFSLVF+SEIGDKTFFIA LLA KTS+ +SF GS+GALAVMTV++ ++G  FH+VPS  T GLPLDDV A  AF +FG  TLKD+Y L  D    ++EE A+AE++++  E  K  T W
Sbjct:  139 IAGAPAASFIESFASTGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSKFVSFVGSLGALAVMTVISCILGQIFHAVPSGITQGLPLDDVAAVVAFAFFGFKTLKDSYDLE-DGESVMDEELADAEDAVEGSETIKQVTPW 276          
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Match: A0A7S2K988_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K988_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.680e-34
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1
Query:   76 LPLVSAAVGSPLVEKLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAFHSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAEAEESI 465
            L  +S A  S +V + + SGF+QAFSLVF+SEIGDKTFFIA LLA KTSRL+SF GS+GALA MTVL+VL+G  FH+VP+    G+PLDDV A  AF +FG+ TLK+A  +  ++   ++EE  EA+E++
Sbjct:  176 LDSMSVADASAMVGRFSESGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRLVSFIGSMGALAAMTVLSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFTFFGLKTLKEASDMDPEAGSVMDEEFEEAQEAV 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53937.12757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPN6_ECTSI8.960e-7883.03GDT1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5L6M0_9PHAE1.250e-7683.03GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A836CPU7_9STRA2.720e-4361.64GDT1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2U7L4_9STRA1.760e-3657.69GDT1 family protein n=2 Tax=Attheya septentrionali... [more]
W7TMF8_9STRA5.770e-3656.49GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2HML6_9STRA4.060e-3556.43GDT1 family protein n=1 Tax=Helicotheca tamesis Ta... [more]
A0A7S1CXU9_CYCTE9.190e-3557.60GDT1 family protein n=1 Tax=Cyclophora tenuis TaxI... [more]
A0A8J6C509_DIALT1.190e-3450.71GDT1 family protein n=1 Tax=Diacronema lutheri Tax... [more]
A0A7S1FYG6_9STRA1.700e-3454.68GDT1 family protein n=1 Tax=Corethron hystrix TaxI... [more]
A0A7S2K988_9STRA9.680e-3456.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53937contigH-elongata_contig53937:403..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.0
Seed ortholog evalue9.6e-62
Seed eggNOG ortholog2880.D8LPN6
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Golgi calcium ion transport
EggNOG OGsCOG2119@1,KOG2881@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUncharacterised protein family UPF0016
Ec32 orthologEc-18_001880.1
Exons1
Model size498
Cds size498
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.7153456-CDS-H-elongata_contig53937:402..9001622930878.7153456-CDS-H-elongata_contig53937:402..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53937 403..900 -
1691679608.5590343-CDS-H-elongata_contig53937:402..9001691679608.5590343-CDS-H-elongata_contig53937:402..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53937 403..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53937.12757.1prot_H-elongata_contig53937.12757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53937 403..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53937.12757.1

>prot_H-elongata_contig53937.12757.1 ID=prot_H-elongata_contig53937.12757.1|Name=mRNA_H-elongata_contig53937.12757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
AALLAAAAATTSQILPHAAVAAENTLPLVSAAVGSPLVEKLTSSGFFQAF
SLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLVGLAF
HSVPSVFTSGLPLDDVIAAAAFLYFGVITLKDAYKLPGDSNEGINEEKAE
AEESIKEIEGKKTTW*
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mRNA from alignment at H-elongata_contig53937:403..900-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53937.12757.1 ID=mRNA_H-elongata_contig53937.12757.1|Name=mRNA_H-elongata_contig53937.12757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig53937:403..900- (Himanthalia elongata Himel1 dioecious)
GCAGCGCTGCTTGCGGCAGCAGCAGCTACGACAAGCCAGATCCTTCCTCA TGCAGCTGTGGCGGCTGAGAATACCCTCCCACTCGTGTCTGCGGCCGTGG GTAGTCCTTTAGTGGAAAAATTAACCAGCTCCGGGTTCTTCCAAGCCTTC TCCCTCGTGTTCGTGTCCGAAATCGGCGATAAGACGTTCTTTATTGCTGC CCTCTTGGCGGCGAAGACGTCACGCCTTATCTCGTTCGCGGGATCTGTGG GGGCTCTCGCTGTGATGACGGTTCTTGCTGTCCTCGTAGGTCTAGCGTTT CACTCCGTGCCATCGGTCTTTACTTCGGGCTTACCTCTTGACGACGTCAT CGCGGCAGCAGCTTTCCTATACTTCGGTGTCATTACACTGAAAGATGCAT ACAAACTACCGGGAGACTCGAACGAGGGTATCAACGAGGAGAAAGCGGAA GCTGAGGAGAGCATCAAGGAGATCGAGGGCAAGAAAACAACTTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig53937:403..900-

>mRNA_H-elongata_contig53937.12757.1 ID=mRNA_H-elongata_contig53937.12757.1|Name=mRNA_H-elongata_contig53937.12757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig53937:403..900- (Himanthalia elongata Himel1 dioecious)
GCAGCGCTGCTTGCGGCAGCAGCAGCTACGACAAGCCAGATCCTTCCTCA
TGCAGCTGTGGCGGCTGAGAATACCCTCCCACTCGTGTCTGCGGCCGTGG
GTAGTCCTTTAGTGGAAAAATTAACCAGCTCCGGGTTCTTCCAAGCCTTC
TCCCTCGTGTTCGTGTCCGAAATCGGCGATAAGACGTTCTTTATTGCTGC
CCTCTTGGCGGCGAAGACGTCACGCCTTATCTCGTTCGCGGGATCTGTGG
GGGCTCTCGCTGTGATGACGGTTCTTGCTGTCCTCGTAGGTCTAGCGTTT
CACTCCGTGCCATCGGTCTTTACTTCGGGCTTACCTCTTGACGACGTCAT
CGCGGCAGCAGCTTTCCTATACTTCGGTGTCATTACACTGAAAGATGCAT
ACAAACTACCGGGAGACTCGAACGAGGGTATCAACGAGGAGAAAGCGGAA
GCTGAGGAGAGCATCAAGGAGATCGAGGGCAAGAAAACAACTTGGTGAGC
AGCGCTGCTTGCGGCAGCAGCAGCTACGACAAGCCAGATCCTTCCTCATG
CAGCTGTGGCGGCTGAGAATACCCTCCCACTCGTGTCTGCGGCCGTGGGT
AGTCCTTTAGTGGAAAAATTAACCAGCTCCGGGTTCTTCCAAGCCTTCTC
CCTCGTGTTCGTGTCCGAAATCGGCGATAAGACGTTCTTTATTGCTGCCC
TCTTGGCGGCGAAGACGTCACGCCTTATCTCGTTCGCGGGATCTGTGGGG
GCTCTCGCTGTGATGACGGTTCTTGCTGTCCTCGTAGGTCTAGCGTTTCA
CTCCGTGCCATCGGTCTTTACTTCGGGCTTACCTCTTGACGACGTCATCG
CGGCAGCAGCTTTCCTATACTTCGGTGTCATTACACTGAAAGATGCATAC
AAACTACCGGGAGACTCGAACGAGGGTATCAACGAGGAGAAAGCGGAAGC
TGAGGAGAGCATCAAGGAGATCGAGGGCAAGAAAACAACTTGGTGA
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