mRNA_H-elongata_contig539.12756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig539.12756.1
Unique NamemRNA_H-elongata_contig539.12756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig539.12756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig539contigH-elongata_contig539:5752..5997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.53683-CDS-H-elongata_contig539:5751..59761622930878.53683-CDS-H-elongata_contig539:5751..5976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig539 5752..5976 -
1691679608.537337-CDS-H-elongata_contig539:5751..59761691679608.537337-CDS-H-elongata_contig539:5751..5976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig539 5752..5976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.6649473-UTR-H-elongata_contig539:5976..59971622930878.6649473-UTR-H-elongata_contig539:5976..5997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig539 5977..5997 -
1691679608.5480444-UTR-H-elongata_contig539:5976..59971691679608.5480444-UTR-H-elongata_contig539:5976..5997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig539 5977..5997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig539.12756.1prot_H-elongata_contig539.12756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig539 5752..5976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig539.12756.1

>prot_H-elongata_contig539.12756.1 ID=prot_H-elongata_contig539.12756.1|Name=mRNA_H-elongata_contig539.12756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
METTLHARRLLWAGTLSRMSGGQLLKRIVAGNLEGAVRRGRGEKEKEWTD
CVQSDIWAFGITGDWKATALKAEVW
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mRNA from alignment at H-elongata_contig539:5752..5997-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig539.12756.1 ID=mRNA_H-elongata_contig539.12756.1|Name=mRNA_H-elongata_contig539.12756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig539:5752..5997- (Himanthalia elongata Himel1 dioecious)
GAGATACCCCGGCGCAAGAGCATGGAGACAACTTTGCACGCAAGAAGACT
TTTGTGGGCGGGAACGCTCAGCCGAATGAGCGGCGGGCAGCTGCTAAAGC
GAATCGTCGCCGGAAATCTTGAGGGTGCAGTACGGAGAGGACGGGGTGAG
AAGGAGAAAGAGTGGACCGATTGCGTACAGAGCGACATTTGGGCATTTGG
CATAACCGGGGATTGGAAAGCAACTGCGTTGAAGGCTGAGGTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig539:5752..5997-

>mRNA_H-elongata_contig539.12756.1 ID=mRNA_H-elongata_contig539.12756.1|Name=mRNA_H-elongata_contig539.12756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig539:5752..5997- (Himanthalia elongata Himel1 dioecious)
ATGGAGACAACTTTGCACGCAAGAAGACTTTTGTGGGCGGGAACGCTCAG
CCGAATGAGCGGCGGGCAGCTGCTAAAGCGAATCGTCGCCGGAAATCTTG
AGGGTGCAGTACGGAGAGGACGGGGTGAGAAGGAGAAAGAGTGGACCGAT
TGCGTACAGAGCGACATTTGGGCATTTGGCATAACCGGGGATTGGAAAGC
AACTGCGTTGAAGGCTGAGGTGTGGATGGAGACAACTTTGCACGCAAGAA
GACTTTTGTGGGCGGGAACGCTCAGCCGAATGAGCGGCGGGCAGCTGCTA
AAGCGAATCGTCGCCGGAAATCTTGAGGGTGCAGTACGGAGAGGACGGGG
TGAGAAGGAGAAAGAGTGGACCGATTGCGTACAGAGCGACATTTGGGCAT
TTGGCATAACCGGGGATTGGAAAGCAACTGCGTTGAAGGCTGAGGTGTGG
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