mRNA_H-elongata_contig53896.12755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53896.12755.1
Unique NamemRNA_H-elongata_contig53896.12755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.080e-26
Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   10 FVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRA-APDYYMLSYL--------EVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKR 438
            FVYLG  I   G +  EI  R   A  CF + S+A+YD    P+  KVR L+AEV+E +LYGCVTW L P ++ KLR +H   LLRCI      R   P  Y  + +        E  V +R L +AG V RM D+RLP I + GE+  G R
Sbjct:  128 FVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGAR 279          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.950e-22
Identity = 56/152 (36.84%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   10 FVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----------LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRG 432
            F YLG  ++  GD+  EI  R+  AW C  +Y R ++D    P   K+R L+AE +E +LYGC+TW    G +  LR  H R+LLR I      R    Y  LSY           +E  + Q+ L +AG + R  D RLP  +M GE+  G
Sbjct:  357 FRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGY---KRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRLPKRLMFGELAGG 505          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5L0G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.390e-19
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    4 DTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCIN----AYTSTRAAP 303
            D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+RFL+AEV+E +LYGC +W L+   + KL  +HR+ L RCI+    A T  + AP
Sbjct:   96 DRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRFLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIDRLEQAETIAQTAP 199          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.000e-18
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    4 DTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY------------LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG 447
            D FVYLG TIS+      EI  R+  AW C+ + S ++YD        K+R L+AEV+E +L GC +W L+   + KL  ++R+ L R I    S R   D   LSY            +E  V +R L +AG V+RM D+RLPN ++   M  G   RG
Sbjct:   24 DRFVYLGRTISADRKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLCGCASWSLTAEHYTKLNGTYRQFLTRRIG--WSKRKRSD-RPLSYAQALIQAGCEEIIEATVHKRRLCFAGFVMRMEDNRLPNRMLLEAMAGGVGYRG 180          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF)

HSP 1 Score: 85.5 bits (210), Expect = 1.540e-16
Identity = 50/151 (33.11%), Postives = 75/151 (49.67%), Query Frame = 1
Query:    1 VDTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCIN----AYTSTRAAPDYYMLSYLEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRK 441
            VDTFVYLG+TIS  G +  EI  RT  +   F K  + V+    I +  K+      +L  +LY    W        +L+  H++ L R +N    + TS  A         +E  +M+  L +AG VVRM D+R+P  +  GE++ GKR+
Sbjct:  333 VDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNIKWRSLTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQ 483          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58)

HSP 1 Score: 82.8 bits (203), Expect = 1.230e-15
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 1
Query:    1 VDTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKR 438
            VDTFVYLG+TIS  G +  EI  RT      F K  + V+    I +  K+      +L  +LY    W        +L   H++ L R +N    +   PD  +L       +E  +M+  L +AG VVRM D+R+P  +  GE++ GKR
Sbjct:  155 VDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQIAECPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKR 304          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395)

HSP 1 Score: 82.8 bits (203), Expect = 1.290e-15
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1
Query:    1 VDTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKR 438
            VDTFVYLG+TIS  G +  EI  RT  A   F K  + V+    I +  K+      +L  +LY    W        +L   H++ L R +N    +   PD  +L       +E  +M+  L +AG VVRM D+R+P  +  GE++ GKR
Sbjct:  208 VDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDTGVLQIAECPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKR 357          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5L1F1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.680e-15
Identity = 52/156 (33.33%), Postives = 71/156 (45.51%), Query Frame = 1
Query:   10 FVYLGNTISSVGDV------GPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCIN--------AYTSTRAAPDYYMLSYLEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGK 435
            F YLG+ +    ++      G E +      W C  KY+R  +D        K+R LKAE +E +L GC+TW      +D L  +  R+LLR I            S   A  Y     +E  V QR L +AG V R  D RLP  +M G++V GK
Sbjct:  385 FRYLGSRVREDVELTKEINHGAEQRGLVSGTWACLRKYARECFDRPTALWGLKIRLLKAEAMEALLIGCMTWAPRRKHYDLLTTTRHRLLLRVIGYRRARGQYRQLSNAQALKYVECQSVEATVRQRRLLFAGAVARQSDGRLPKRLMLGDIVGGK 540          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-14
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 1
Query:    7 TFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG 447
            TF YLG+TIS    +  EI+RR   A + F +    V+    I +  K+   KA V+  +LYG  TW L      KL E+ ++  LR I         P   +L       +E  + +R L +AG +VRM D+RLP I++ GE+ +G R  G
Sbjct:  111 TFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTPHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVG 261          
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 75.5 bits (184), Expect = 4.180e-14
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  160 LKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----------LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRG 432
            LKAEV+E +LYGCVTW L+   F KLR +H  +LLR I      R   D+  LSY           +E  + +R L +AG VVR H+ RLP+ +M G +  G
Sbjct:    2 LKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRT--DHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGG 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE1.080e-2642.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBT2_9PHAE4.950e-2236.84Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L0G6_9PHAE3.390e-1943.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGW6_9PHAE3.000e-1837.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00077B22FF1.540e-1633.11uncharacterized protein LOC107355912 n=1 Tax=Acrop... [more]
UPI001CF59A581.230e-1533.11uncharacterized protein LOC122965242 n=1 Tax=Acrop... [more]
UPI001CF213951.290e-1533.77uncharacterized protein LOC122952729 n=1 Tax=Acrop... [more]
A0A6H5L1F1_9PHAE4.680e-1533.33Reverse transcriptase domain-containing protein n=... [more]
A0A6S7JKI9_PARCT2.300e-1434.21Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI001AA1A1FE4.180e-1442.16hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53896contigH-elongata_contig53896:2065..2547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53896.12755.1prot_H-elongata_contig53896.12755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53896 2248..2547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.4701295-UTR-H-elongata_contig53896:2064..22471622930878.4701295-UTR-H-elongata_contig53896:2064..2247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53896 2065..2247 +
1691679608.5087242-UTR-H-elongata_contig53896:2064..22471691679608.5087242-UTR-H-elongata_contig53896:2064..2247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53896 2065..2247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.4816651-CDS-H-elongata_contig53896:2247..23941622930878.4816651-CDS-H-elongata_contig53896:2247..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53896 2248..2394 +
1691679608.5179248-CDS-H-elongata_contig53896:2247..23941691679608.5179248-CDS-H-elongata_contig53896:2247..2394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53896 2248..2394 +
1622930878.492512-CDS-H-elongata_contig53896:2427..25471622930878.492512-CDS-H-elongata_contig53896:2427..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53896 2428..2547 +
1691679608.5272756-CDS-H-elongata_contig53896:2427..25471691679608.5272756-CDS-H-elongata_contig53896:2427..2547Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53896 2428..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53896.12755.1

>prot_H-elongata_contig53896.12755.1 ID=prot_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSYLEV
AVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG*
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mRNA from alignment at H-elongata_contig53896:2065..2547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53896.12755.1 ID=mRNA_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig53896:2065..2547+ (Himanthalia elongata Himel1 dioecious)
GTCGACACCTTCGTGTATCTTGGCAACACCATCAGCAGCGTTGGGGACGT CGGTCCTGAGATCAAACGCCGTACTGGCTAGGCCTGGAACTGCTTCCTCA AGTACAGCAGGGCGGTGTATGACCACTCATATATCCCAGTGGCAGACAAG GTCCGTTTCCTGAAGGCGGAAGTACTCGAGGTCATGCTCTACGGCTGTGT GACCTGGATTCTTTCACCCGGCGACTTCGACAAGCTGCGGGAATCCCACC GCAGAATGCTGCTGAGGTGCATCAATGCCTACACCTCGACGCGGGCCGCC CCCGACTACTACATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTG TGAGTGAATTGAGGTTGCTGTGATGCAGCGCATCCTCCATTACGCCGGCC GCGTCGTGCGCATGCATGACGATCGTCTCCCCAACATCGTCATGCGTGGC GAAATGGTCAGAGGGAAGAGAAAACGGGGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53896:2065..2547+

>mRNA_H-elongata_contig53896.12755.1 ID=mRNA_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig53896:2065..2547+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTACGGCTGTGTGACCTGGATTCTTTCACCCGGCGACTTCGACAA
GCTGCGGGAATCCCACCGCAGAATGCTGCTGAGGTGCATCAATGCCTACA
CCTCGACGCGGGCCGCCCCCGACTACTACATGCTCTCATACCTCGAGATG
CTCTACGGCTGTGTGACCTGGATTCTTTCACCCGGCGACTTCGACAAGCT
GCGGGAATCCCACCGCAGAATGCTGCTGAGGTGCATCAATGCCTACACCT
CGACGCGGGCCGCCCCCGACTACTACATGCTCTCATACCTCGAGGTTGCT
GTGATGCAGCGCATCCTCCATTACGCCGGCCGCGTCGTGCGCATGCATGA
CGATCGTCTCCCCAACATCGTCATGCGTGGCGAAATGGTCAGAGGGAAGA
GAAAACGGGGCTAGGTTGCTGTGATGCAGCGCATCCTCCATTACGCCGGC
CGCGTCGTGCGCATGCATGACGATCGTCTCCCCAACATCGTCATGCGTGG
CGAAATGGTCAGAGGGAAGAGAAAACGGGGCTAG
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