mRNA_H-elongata_contig53881.12751.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53881.12751.1
Unique NamemRNA_H-elongata_contig53881.12751.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: D7FTT4_ECTSI (Aldo/keto reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT4_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.310e-43
Identity = 76/101 (75.25%), Postives = 81/101 (80.20%), Query Frame = 1
Query:    1 TPNRHPWAT-SIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEEDRKRCVCV 300
            TP R  + T S  +YYNMIRQWGGWPLFQELLS  K VADKHGVSIPN+GVRWVLDR    PAV GAIVG RLGLTDHSDDNRRVFGL+LD+EDR R   V
Sbjct:  224 TPTRSDFTTVSEMKYYNMIRQWGGWPLFQELLSVTKSVADKHGVSIPNVGVRWVLDR----PAVAGAIVGTRLGLTDHSDDNRRVFGLKLDDEDRSRIAAV 320          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: A0A836CKF2_9STRA (Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.310e-29
Identity = 57/86 (66.28%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEED 279
              S  +YYNMIR WGGW LFQ+LLS  K VADKHGVS+ N+GVRWVL +    PAVGGAIVGARLGLTDH  D+ RVF  +LD +D
Sbjct:  289 TVSQQKYYNMIRAWGGWDLFQQLLSTCKKVADKHGVSVANVGVRWVLQQ----PAVGGAIVGARLGLTDHIADSARVFSFKLDADD 370          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: L1IRU4_GUITC (Aldo_ket_red domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRU4_GUITC)

HSP 1 Score: 117 bits (292), Expect = 1.470e-29
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEED 279
              S  +YYNMIR WGGW LFQELL+ +K VADKHGVS+ N+  RWV+D+    P+ GGAIVGARLGL +H DDN RVFG +LD+ED
Sbjct:  232 TVSKQKYYNMIRAWGGWDLFQELLAKMKIVADKHGVSVANVAQRWVIDQ----PSTGGAIVGARLGLQEHIDDNLRVFGFKLDKED 313          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: A0A7S2V4G1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4G1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.590e-28
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEED 279
             +S+ +YY MI QWGGW LFQ+LL+A+K VADKH VSI N+ VRWVLD+    PAVGGAIVG RLG  DH +DN++VF   LDEED
Sbjct:  361 TSSLRKYYYMIAQWGGWSLFQQLLTAMKQVADKHDVSIANVAVRWVLDQ----PAVGGAIVGVRLGYRDHIEDNKKVFSFSLDEED 442          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: UPI001880C35D (aldo/keto reductase n=1 Tax=Nostoc edaphicum TaxID=264686 RepID=UPI001880C35D)

HSP 1 Score: 108 bits (270), Expect = 6.160e-28
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEEDRKRCVCV 300
              S+ +Y NMI  WGGW LFQELL+ +K +A+KHGVSI N+ VR++LD+    P VGG IVGARLG+++H +DN +VF   LDE+DR R   V
Sbjct:   60 TASLKKYKNMIDAWGGWQLFQELLAILKEIANKHGVSISNVAVRYILDQ----PTVGGVIVGARLGVSEHLEDNAKVFSFSLDEDDRDRISAV 148          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: A0A7S1HNK4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HNK4_HEMAN)

HSP 1 Score: 114 bits (284), Expect = 8.810e-28
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEEDRKRCVCV 300
              S  +YYNMI  WGGWPLFQ+LL+ +K + DKHGVS+ N+  RW +++    PAV GAIVGARLGLTDH+D N +VF  +LD++D+ +   V
Sbjct:  334 TASKGKYYNMIEMWGGWPLFQDLLATLKQIGDKHGVSVTNVATRWAIEQ----PAVAGAIVGARLGLTDHTDSNLKVFTFQLDDDDKAKIAAV 422          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: A0A537S9S6_9PROT (Aldo/keto reductase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S9S6_9PROT)

HSP 1 Score: 106 bits (264), Expect = 7.560e-27
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEED 279
              S+ +Y NMI  WGGW LFQ+LL+A+K +AD+HG SI NIG R++LDR    PAV G IVGARLGL +H  DN RVF + LD ED
Sbjct:   76 TASLQKYKNMIDAWGGWALFQDLLAALKPIADEHGASIANIGTRYILDR----PAVAGTIVGARLGLAEHIADNARVFDIALDSED 157          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: UPI001798826B (Aldo/keto reductase n=1 Tax=Anabaena sp. TaxID=1167 RepID=UPI001798826B)

HSP 1 Score: 109 bits (272), Expect = 1.240e-26
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEEDRKR 288
              S+ +Y NMI  WGGW LFQELLS +K +ADKHGVSI N+ VR++LD+    P VGG IVGARLG+ +H +DN +VF L LD ED  R
Sbjct:  231 TVSLRKYKNMIDAWGGWQLFQELLSTLKAIADKHGVSIANVAVRYILDQ----PTVGGVIVGARLGIAEHIEDNAKVFSLILDAEDSDR 315          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: A0A4D9CZK6_9STRA (Aldo_ket_red domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.360e-26
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTD--HSDDNRRVFGLRLDEEDRKRCVCV 300
              S  +YYNMIR WG W LFQELL A+ GVA+KH VSIPN+ VRWVL++    PAVGGAIVG R GL    H++DNR VF   LD+EDR+    V
Sbjct:  311 TVSQQKYYNMIRTWGDWALFQELLQAMDGVAEKHQVSIPNVAVRWVLEQ----PAVGGAIVGCRFGLKGKAHTEDNRAVFAFALDKEDREALQAV 401          
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Match: A0A8J6XL27_9CYAN (Aldo/keto reductase n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XL27_9CYAN)

HSP 1 Score: 108 bits (271), Expect = 1.630e-26
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   22 ATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGVRWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEEDRKRCVCV 300
              S+ +Y NMI  WGGW LFQELLS +K +ADKH VSIPN+ VR++LD+    P+VGG IVGARLG+ +H +DN +VFG  L++ D  +   V
Sbjct:  227 TVSLRKYKNMIDSWGGWSLFQELLSTLKEIADKHSVSIPNVAVRYILDK----PSVGGVIVGARLGIAEHIEDNAKVFGFTLNDSDMNQVDAV 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53881.12751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTT4_ECTSI3.310e-4375.25Aldo/keto reductase n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CKF2_9STRA1.310e-2966.28Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=... [more]
L1IRU4_GUITC1.470e-2963.95Aldo_ket_red domain-containing protein n=1 Tax=Gui... [more]
A0A7S2V4G1_9STRA1.590e-2863.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001880C35D6.160e-2854.84aldo/keto reductase n=1 Tax=Nostoc edaphicum TaxID... [more]
A0A7S1HNK4_HEMAN8.810e-2853.76Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A537S9S6_9PROT7.560e-2759.30Aldo/keto reductase (Fragment) n=2 Tax=Alphaproteo... [more]
UPI001798826B1.240e-2658.43Aldo/keto reductase n=1 Tax=Anabaena sp. TaxID=116... [more]
A0A4D9CZK6_9STRA1.360e-2658.95Aldo_ket_red domain-containing protein n=2 Tax=Mon... [more]
A0A8J6XL27_9CYAN1.630e-2653.76Aldo/keto reductase n=1 Tax=Iningainema tapete BLC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53881contigH-elongata_contig53881:202..858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue6e-35
Seed eggNOG ortholog2880.D7FTT4
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.123044-CDS-H-elongata_contig53881:201..3801622930878.123044-CDS-H-elongata_contig53881:201..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53881 202..380 +
1691679608.4113357-CDS-H-elongata_contig53881:201..3801691679608.4113357-CDS-H-elongata_contig53881:201..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53881 202..380 +
1622930878.1377535-CDS-H-elongata_contig53881:737..8581622930878.1377535-CDS-H-elongata_contig53881:737..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53881 738..858 +
1691679608.4223485-CDS-H-elongata_contig53881:737..8581691679608.4223485-CDS-H-elongata_contig53881:737..858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53881 738..858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53881.12751.1prot_H-elongata_contig53881.12751.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53881 202..858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53881.12751.1

>prot_H-elongata_contig53881.12751.1 ID=prot_H-elongata_contig53881.12751.1|Name=mRNA_H-elongata_contig53881.12751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
TPNRHPWATSIHQYYNMIRQWGGWPLFQELLSAVKGVADKHGVSIPNIGV
RWVLDRRGSGPAVGGAIVGARLGLTDHSDDNRRVFGLRLDEEDRKRCVCV
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mRNA from alignment at H-elongata_contig53881:202..858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53881.12751.1 ID=mRNA_H-elongata_contig53881.12751.1|Name=mRNA_H-elongata_contig53881.12751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=657bp|location=Sequence derived from alignment at H-elongata_contig53881:202..858+ (Himanthalia elongata Himel1 dioecious)
ACCCCAAACCGCCATCCGTGGGCTACTAGTATTCACCAGTACTATAACAT GATTCGCCAGTGGGGAGGGTGGCCGCTCTTCCAGGAGTTGCTTTCTGCGG TGAAAGGGGTAGCCGACAAGCACGGGGTCAGCATCCCCAACATCGGCGTC CGTTGGGTTTTAGACAGGCGAGGGAGTGGGTAGAAAGGGGACGGGAGAAG AGAGGACGTTCCCGCCCCGGAGAGGAGGAAGCATTTATCATCTGTCCTCT TTCCCGCATACGTATGCCTGTCTAGCAACAGTAGCTGCTGCAAGAGGATA TATCTTTTGAGCCATCGGCGCTGCCCTGTCGCCGTGAAGTATACAGAGGT GAACTGACAGGTGCCCCCCCCCCCTAATTGTGTCGTTGTTTTACCGGTTA TTTGACTCTAAACGGTATGTATACATCAATATCTACATACCTGTACATAC AAAATGTACCGGTATGTCCTATCTCTCTCTTTATTTATAGAAAAACAACA AGGGATGACACTCCATATGTTGACGGTTGTTGACAGGCCGGCGGTTGGCG GGGCGATCGTCGGCGCCAGGCTGGGGTTGACGGACCACTCCGATGACAAC CGACGGGTGTTTGGGCTGCGGCTCGACGAGGAGGACCGTAAGAGGTGTGT GTGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig53881:202..858+

>mRNA_H-elongata_contig53881.12751.1 ID=mRNA_H-elongata_contig53881.12751.1|Name=mRNA_H-elongata_contig53881.12751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig53881:202..858+ (Himanthalia elongata Himel1 dioecious)
ACCCCAAACCGCCATCCGTGGGCTACTAGTATTCACCAGTACTATAACAT
GATTCGCCAGTGGGGAGGGTGGCCGCTCTTCCAGGAGTTGCTTTCTGCGG
TGAAAGGGGTAGCCGACAAGCACGGGGTCAGCATCCCCAACATCGGCGTC
CGTTGGGTTTTAGACAGGCGAGGGAGTGGACCCCAAACCGCCATCCGTGG
GCTACTAGTATTCACCAGTACTATAACATGATTCGCCAGTGGGGAGGGTG
GCCGCTCTTCCAGGAGTTGCTTTCTGCGGTGAAAGGGGTAGCCGACAAGC
ACGGGGTCAGCATCCCCAACATCGGCGTCCGTTGGGTTTTAGACAGGCGA
GGGAGTGGGCCGGCGGTTGGCGGGGCGATCGTCGGCGCCAGGCTGGGGTT
GACGGACCACTCCGATGACAACCGACGGGTGTTTGGGCTGCGGCTCGACG
AGGAGGACCGTAAGAGGTGTGTGTGTGTGGCCGGCGGTTGGCGGGGCGAT
CGTCGGCGCCAGGCTGGGGTTGACGGACCACTCCGATGACAACCGACGGG
TGTTTGGGCTGCGGCTCGACGAGGAGGACCGTAAGAGGTGTGTGTGTGTG
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