prot_H-elongata_contig53875.12748.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53875.12748.1
Unique Nameprot_H-elongata_contig53875.12748.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: D8LE03_ECTSI (PUA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE03_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.350e-43
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            RFSKDDVSSSSQVKSSVQRG RAKL+EQFPN E YLE ILPKK N+T+AKCKDRVSLICCDGVPLFFQQRDG I+PTLR LH+
Sbjct:    4 RFSKDDVSSSSQVKSSVQRGFRAKLLEQFPNSEPYLEDILPKKGNVTIAKCKDRVSLICCDGVPLFFQQRDGHIFPTLRILHK 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A835Z9W5_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.790e-28
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 0
Query:    1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            RF++D+ VSS+SQ+KSSVQR +RAKLIEQFP  E  L+ ILPKK NIT+AKC ++VSLIC D   +FFQ+RDG I+PTLR +HQ
Sbjct:    4 RFTQDENVSSNSQIKSSVQRSMRAKLIEQFPLIEEVLDDILPKKGNITIAKCSNKVSLICRDNKIMFFQERDGPIFPTLRLVHQ 87          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7S2Y120_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y120_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.870e-25
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            RF+  ++SS+SQVKSSVQRGIRAK++EQ+P  E  ++ ILPKK++  VA+C + V LIC  G PLFFQ RDG  +P LR +HQ
Sbjct:    4 RFTNSEISSASQVKSSVQRGIRAKIVEQYPALEEEIDEILPKKSDFVVARCPNHVQLICHGGKPLFFQCRDGPFFPCLRLVHQ 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: B3RWP3_TRIAD (PUA domain-containing protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3RWP3_TRIAD)

HSP 1 Score: 98.2 bits (243), Expect = 7.980e-24
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 0
Query:    3 SKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWV 87
            SK D+ SSSQVKSSVQRGIRAK+++QFP+ + Y++ ILPKKA + + KC D + ++  +   LFF+QRDG  +PTLR LHQ  ++
Sbjct:    7 SKQDIVSSSQVKSSVQRGIRAKVLQQFPDLQDYIDDILPKKAALILVKCHDHIEIVSINTKLLFFRQRDGPFFPTLRLLHQYPFI 91          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7S1DFR4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DFR4_HEMAN)

HSP 1 Score: 94.4 bits (233), Expect = 4.080e-23
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            +F  D+V   S++KSS QRGIR+ ++EQFP  E Y+E I+PKKA + VAKC+ ++S++  D  PLF+  RDG  YPTLR +H+
Sbjct:    4 KFGGDEVRDKSKIKSSQQRGIRSSILEQFPKLEPYMEQIMPKKAEVQVAKCEGKISVVMVDDEPLFYNVRDGPYYPTLRLVHK 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: W7TYT1_9STRA (Pseudouridine synthase and archaeosine transglycosylase domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYT1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.540e-23
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            RF++DD SS+ QVKSSVQRGIR  ++EQ+P  ES +E I PKKAN+ V KC   V ++  +  PLFF  RDG  +PTLR LHQ
Sbjct:   55 RFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQ 137          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A024GCP6_9STRA (PUA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCP6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.850e-22
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 0
Query:    1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQC----EWVR 88
            RFS D+ ++S SQVKSS QR IR+ ++ Q+P  E YLE +LPKKA + VAKC + + L+  DG+PLFF  RDG   PTL+ LHQ     +WVR
Sbjct:    4 RFSVDENIASHSQVKSSQQRAIRSSILTQYPEVEPYLEQLLPKKAPMIVAKCHNHLQLVLHDGIPLFFNYRDGPFMPTLKVLHQIPKAMQWVR 96          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A6T8L136_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6T8L136_HEMAN)

HSP 1 Score: 94.4 bits (233), Expect = 2.740e-22
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            +F  D+V   S++KSS QRGIR+ ++EQFP  E Y+E I+PKKA + VAKC+ ++S++  D  PLF+  RDG  YPTLR +H+
Sbjct:    4 KFGGDEVRDKSKIKSSQQRGIRSSILEQFPKLEPYMEQIMPKKAEVQVAKCEGKISVVMVDDEPLFYNVRDGPYYPTLRLVHK 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7R9XUX2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XUX2_9VIRI)

HSP 1 Score: 93.6 bits (231), Expect = 7.930e-22
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 0
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKAN--ITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 83
            RF+ DDVSS SQVKSSV RGIRAK+  QFPN E  L+ +LPK  +  + + KC DR+SL+     PLFFQ RDG  YPTLR LH+
Sbjct:   23 RFTYDDVSSVSQVKSSVARGIRAKIAAQFPNLEPALDDVLPKGKDTPMMIGKCTDRISLVVVRDEPLFFQFRDGPYYPTLRLLHR 107          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: W2RFJ5_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RFJ5_PHYPN)

HSP 1 Score: 91.3 bits (225), Expect = 1.540e-21
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 0
Query:    1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWV 87
            RFS D+ +S+SS+VKSS QR IRAK++EQ+P+ E Y E  +PKKA + VAKC + + ++  +G PLFF QRDG   PTL+ LH+   V
Sbjct:    4 RFSVDEHMSTSSKVKSSQQRSIRAKVLEQYPDLEPYAEMFMPKKAPMVVAKCHNHIQIVLHEGEPLFFNQRDGPFMPTLKLLHKVPHV 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE03_ECTSI2.350e-4385.54PUA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z9W5_9STRA6.790e-2865.48PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2Y120_9STRA6.870e-2557.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B3RWP3_TRIAD7.980e-2454.12PUA domain-containing protein (Fragment) n=2 Tax=T... [more]
A0A7S1DFR4_HEMAN4.080e-2350.60Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
W7TYT1_9STRA4.540e-2356.63Pseudouridine synthase and archaeosine transglycos... [more]
A0A024GCP6_9STRA1.850e-2252.69PUA domain-containing protein n=1 Tax=Albugo candi... [more]
A0A6T8L136_HEMAN2.740e-2250.60Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
A0A7R9XUX2_9VIRI7.930e-2258.82Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
W2RFJ5_PHYPN1.540e-2152.27Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041366Pre-PUA domainPFAMPF17832Pre-PUAcoord: 4..84
e-value: 4.2E-28
score: 97.9
IPR016437MCT-1/Tma20PANTHERPTHR22798MCT-1 PROTEINcoord: 1..85
NoneNo IPR availableSUPERFAMILY88802Pre-PUA domaincoord: 38..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53875contigH-elongata_contig53875:194..1061 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53875.12748.1mRNA_H-elongata_contig53875.12748.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53875 194..1061 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53875.12748.1 ID=prot_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAK
CKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWVRWVSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041366Pre-PUA
IPR016437MCT-1/Tma20