mRNA_H-elongata_contig53844.12743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53844.12743.1
Unique NamemRNA_H-elongata_contig53844.12743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53844.12743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53844contigH-elongata_contig53844:1361..3925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2223
Cds size1809
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53844.12743.1prot_H-elongata_contig53844.12743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53844 1659..3809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.2172165-UTR-H-elongata_contig53844:1360..16581622930877.2172165-UTR-H-elongata_contig53844:1360..1658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53844 1361..1658 -
1691679608.0080254-UTR-H-elongata_contig53844:1360..16581691679608.0080254-UTR-H-elongata_contig53844:1360..1658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53844 1361..1658 -
1622930877.2648036-UTR-H-elongata_contig53844:3809..39251622930877.2648036-UTR-H-elongata_contig53844:3809..3925Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53844 3810..3925 -
1691679608.0379431-UTR-H-elongata_contig53844:3809..39251691679608.0379431-UTR-H-elongata_contig53844:3809..3925Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53844 3810..3925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.2341955-CDS-H-elongata_contig53844:1658..21751622930877.2341955-CDS-H-elongata_contig53844:1658..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53844 1659..2175 -
1691679608.0186741-CDS-H-elongata_contig53844:1658..21751691679608.0186741-CDS-H-elongata_contig53844:1658..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53844 1659..2175 -
1622930877.2478104-CDS-H-elongata_contig53844:2517..38091622930877.2478104-CDS-H-elongata_contig53844:2517..3809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53844 2518..3809 -
1691679608.028581-CDS-H-elongata_contig53844:2517..38091691679608.028581-CDS-H-elongata_contig53844:2517..3809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53844 2518..3809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53844.12743.1

>prot_H-elongata_contig53844.12743.1 ID=prot_H-elongata_contig53844.12743.1|Name=mRNA_H-elongata_contig53844.12743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=603bp
MVLLNMTRPKDGCSEQPTSGVTGRTNRDHCAMHTLEGMANVKMQMYTSDS
CSKVPIEVKAGSPKREYCAEDALEGMVNATKEICLSDGCYKLAGCYKLAS
YGTIGSKKWEYCAEHSLEEMDNVSKKMCLSDGCYKLASYGKAGSKKREYC
IEHALEGMVTLSNKRYADDGCSKLESYGKAGSKKREYCTEHLLEGMVNLS
KERCAGDGCSNLANYGNAGSTKREFCSMHALEGMVNVKNKRCACDGCSKQ
PNYGKAGSKKREYCSEHALEGMVNLSNTRCADDGCSKLANYGKGGNTKRV
YCAKNVLEGMVNVKNKRCAGDGCCKIASYGNTGSTKREFCAKHALEGMVN
VKKKTCAGDGCFKTSSYGKAGSTNREYCAEHALEGMVNVSRKRCVGDGCN
KLASYGTAGSKKLEYCAEHSLKGMVNILKKNCAGDGCNKTSCYGNARTMK
REYCAEHALEGMTNLSKKRRCAGVGCSKLASYGKTGSKKREYCTEHSLEE
MCIGYSAEHIFEEAVNVSKKMGSGDRCSNISPCEGPGSVKRDYCAKHALE
GMVCIVPHIIPSSRKRVSKICITDSKVRVPFSEAASSVAVLMKSEISVTK
SK*
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mRNA from alignment at H-elongata_contig53844:1361..3925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53844.12743.1 ID=mRNA_H-elongata_contig53844.12743.1|Name=mRNA_H-elongata_contig53844.12743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2565bp|location=Sequence derived from alignment at H-elongata_contig53844:1361..3925- (Himanthalia elongata Himel1 dioecious)
TAGGTCCGTCGACTTTTATCAGAAGATGCACGGGCGGTGATGCTATAAGG
TATCCAATTGCTCAATAGCTAGCTGCGGAAAGTGCAAGTGCCGCGCCGAG
TATTTCGTGGAGGGAAATGGTGTTGTTAAATATGACGCGTCCGAAAGATG
GATGCTCTGAGCAACCGACGTCCGGGGTGACCGGCCGCACGAACCGGGAT
CACTGCGCCATGCATACGCTAGAGGGCATGGCGAATGTTAAGATGCAAAT
GTATACCAGCGATAGCTGCTCTAAGGTACCAATCGAGGTTAAGGCTGGCA
GCCCAAAACGGGAGTACTGCGCTGAGGATGCCTTGGAGGGAATGGTCAAT
GCTACGAAGGAAATTTGTCTCAGCGATGGATGTTATAAGCTTGCTGGATG
TTATAAGCTAGCAAGCTACGGAACAATTGGAAGCAAAAAATGGGAGTACT
GCGCCGAGCACTCATTGGAGGAGATGGACAATGTTTCAAAGAAAATGTGT
CTCAGCGATGGATGTTATAAGCTTGCGAGCTACGGGAAAGCTGGAAGCAA
GAAACGAGAGTACTGCATTGAGCATGCCTTGGAGGGGATGGTCACTCTTT
CGAACAAAAGATATGCTGATGACGGATGTTCTAAGCTAGAGAGCTACGGT
AAGGCTGGAAGCAAGAAACGAGAGTACTGCACTGAGCACTTACTGGAGGG
GATGGTCAATCTTTCGAAGGAAAGGTGTGCTGGTGATGGATGTTCTAATC
TAGCGAACTACGGGAATGCCGGAAGCACCAAGCGAGAGTTCTGCTCTATG
CATGCTTTGGAGGGAATGGTCAATGTTAAGAACAAAAGGTGTGCCTGTGA
TGGGTGTTCTAAGCAACCAAACTACGGGAAGGCTGGAAGCAAGAAACGGG
AGTACTGCTCTGAGCACGCCTTGGAGGGAATGGTCAATCTTTCGAACACA
AGGTGTGCTGATGATGGATGTTCTAAGCTAGCGAACTACGGAAAGGGCGG
AAACACGAAGCGAGTGTACTGCGCTAAGAATGTCTTGGAAGGAATGGTCA
ATGTTAAGAACAAAAGGTGTGCTGGGGATGGATGTTGTAAGATAGCGAGC
TACGGGAATACCGGAAGCACCAAGCGAGAGTTCTGCGCTAAGCATGCTTT
GGAGGGAATGGTCAATGTTAAGAAGAAAACGTGTGCCGGTGATGGGTGTT
TTAAGACTTCAAGCTACGGAAAGGCCGGAAGCACGAATCGAGAGTACTGC
GCTGAGCATGCCTTAGAGGGGATGGTCAATGTTTCGAGGAAAAGGTGTGT
CGGTGATGGATGTAATAAGCTAGCGAGCTACGGAACAGCTGGAAGCAAGA
AATTGGAGTACTGCGCCGAGCACTCATTGAAGGGGATGGTCAATATTTTG
AAAAAAAAGTGTGTCAGTGATGGGTGTAATAAGACTTCCTACTACGGAAA
GACCGGAAGCATGAAGAGAGAGTACTGCGCTGAGCATGCCTTGGAGGGAA
TGGTCAATGTTTCGAGAAGAAGGTGTGCCGGTGATGGGTGTTTTAAGACT
TCGAGCTACGGAAAGGCCGGAACCGTGAAGAGAGAGTACTGCGCTGAGCA
TGCCTTGGAGGGGATGGTCAATGTTTCGAAGAAAGGGTGTGCCGGTGATG
GATGTAATAAGCTAGCGTGCTACGGAACAGCTGGAAGCAAGAAATTGGAG
TACTGCGCCGAGCACTCATTGAAGGGGATGGTCAATATTTTGAAAAAAAG
TTGTGCCGGTGATGGGTGTAATAAGACTTCGTGCTACGGAAATGCCAGAA
CCATGAAGAGAGAGTACTGCGCTGAGCATGCCTTGGAGGGAATGACCAAT
CTTTCGAAGAAAAGGAGGTGTGCTGGTGTTGGATGTTCTAAGCTAGCGAG
CTACGGGAAGACTGGAAGCAAGAAACGAGAGTACTGCACCGAGCATTCCT
TAGAGGAAATGTGTATCGGGTATTCCGCCGAGCATATATTCGAGGAGGCG
GTTAATGTTTCGAAGAAAATGGGTTCAGGGGATAGATGCTCTAACATATC
TCCATGCGAAGGGCCCGGCAGCGTGAAGCGGGATTACTGTGCAAAACATG
CTTTGGAGGGCATGGTGTGTATCGTCCCACACATCATTCCAAGTTCCAGG
AAGCGGGTGTCGAAGATATGTATAACCGATAGTAAGGTTAGAGTCCCCTT
TTCCGAGGCTGCATCATCAGTTGCTGTTTTGATGAAGTCAGAGATATCAG
TAACTAAATCCAAGTAGTTGTTTTTTTTTGCAAAGGATTTTAGAGATTAT
CTTGGCGAACGGGAGCGATAACATTGCGCTCCATGGATTATGTGTCTAAA
ATATTATTTCTTGAGCATGTTCAGTTGACCACAAGCAGGAGGCAACCAAA
TCCGGTTGATTCCTACTCTGCTTTGATTTAAATGTCAGATCATTTCAGCA
AGCAGCGTACGTAAAAATAACTTGGCTAATTCAAAGAGAGATGATATGAC
CCAACAACATTGAGGGGCCGGACACGTTCGATATAATTCACGATCCACGT
GGCCCGCTTGACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig53844:1361..3925-

>mRNA_H-elongata_contig53844.12743.1 ID=mRNA_H-elongata_contig53844.12743.1|Name=mRNA_H-elongata_contig53844.12743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3618bp|location=Sequence derived from alignment at H-elongata_contig53844:1361..3925- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTGTTAAATATGACGCGTCCGAAAGATGGATGCTCTGAGCAACC
GACGTCCGGGGTGACCGGCCGCACGAACCGGGATCACTGCGCCATGCATA
CGCTAGAGGGCATGGCGAATGTTAAGATGCAAATGTATACCAGCGATAGC
TGCTCTAAGGTACCAATCGAGGTTAAGGCTGGCAGCCCAAAACGGGAGTA
CTGCGCTGAGGATGCCTTGGAGGGAATGGTCAATGCTACGAAGGAAATTT
GTCTCAGCGATGGATGTTATAAGCTTGCTGGATGTTATAAGCTAGCAAGC
TACGGAACAATTGGAAGCAAAAAATGGGAGTACTGCGCCGAGCACTCATT
GGAGGAGATGGACAATGTTTCAAAGAAAATGTGTCTCAGCGATGGATGTT
ATAAGCTTGCGAGCTACGGGAAAGCTGGAAGCAAGAAACGAGAGTACTGC
ATTGAGCATGCCTTGGAGGGGATGGTCACTCTTTCGAACAAAAGATATGC
TGATGACGGATGTTCTAAGCTAGAGAGCTACGGTAAGGCTGGAAGCAAGA
AACGAGAGTACTGCACTGAGCACTTACTGGAGGGGATGGTCAATCTTTCG
AAGGAAAGGTGTGCTGGTGATGGATGTTCTAATCTAGCGAACTACGGGAA
TGCCGGAAGCACCAAGCGAGAGTTCTGCTCTATGCATGCTTTGGAGGGAA
TGGTCAATGTTAAGAACAAAAGGTGTGCCTGTGATGGGTGTTCTAAGCAA
CCAAACTACGGGAAGGCTGGAAGCAAGAAACGGGAGTACTGCTCTGAGCA
CGCCTTGGAGGGAATGGTCAATCTTTCGAACACAAGGTGTGCTGATGATG
GATGTTCTAAGCTAGCGAACTACGGAAAGGGCGGAAACACGAAGCGAGTG
TACTGCGCTAAGAATGTCTTGGAAGGAATGGTCAATGTTAAGAACAAAAG
GTGTGCTGGGGATGGATGTTGTAAGATAGCGAGCTACGGGAATACCGGAA
GCACCAAGCGAGAGTTCTGCGCTAAGCATGCTTTGGAGGGAATGGTCAAT
GTTAAGAAGAAAACGTGTGCCGGTGATGGGTGTTTTAAGACTTCAAGCTA
CGGAAAGGCCGGAAGCACGAATCGAGAGTACTGCGCTGAGCATGCCTTAG
AGGGGATGGTCAATGTTTCGAGGAAAAGGTGTGTCGGTGATGGATGTAAT
AAGCTAGCGAGCTACGGAACAGCTGGAAGCAAGAAATTGGAGTACTGCGC
CGAGCACTCATTGAAGGGGATGGTCAATATTTTGAAAAAAAAATGGTGTT
GTTAAATATGACGCGTCCGAAAGATGGATGCTCTGAGCAACCGACGTCCG
GGGTGACCGGCCGCACGAACCGGGATCACTGCGCCATGCATACGCTAGAG
GGCATGGCGAATGTTAAGATGCAAATGTATACCAGCGATAGCTGCTCTAA
GGTACCAATCGAGGTTAAGGCTGGCAGCCCAAAACGGGAGTACTGCGCTG
AGGATGCCTTGGAGGGAATGGTCAATGCTACGAAGGAAATTTGTCTCAGC
GATGGATGTTATAAGCTTGCTGGATGTTATAAGCTAGCAAGCTACGGAAC
AATTGGAAGCAAAAAATGGGAGTACTGCGCCGAGCACTCATTGGAGGAGA
TGGACAATGTTTCAAAGAAAATGTGTCTCAGCGATGGATGTTATAAGCTT
GCGAGCTACGGGAAAGCTGGAAGCAAGAAACGAGAGTACTGCATTGAGCA
TGCCTTGGAGGGGATGGTCACTCTTTCGAACAAAAGATATGCTGATGACG
GATGTTCTAAGCTAGAGAGCTACGGTAAGGCTGGAAGCAAGAAACGAGAG
TACTGCACTGAGCACTTACTGGAGGGGATGGTCAATCTTTCGAAGGAAAG
GTGTGCTGGTGATGGATGTTCTAATCTAGCGAACTACGGGAATGCCGGAA
GCACCAAGCGAGAGTTCTGCTCTATGCATGCTTTGGAGGGAATGGTCAAT
GTTAAGAACAAAAGGTGTGCCTGTGATGGGTGTTCTAAGCAACCAAACTA
CGGGAAGGCTGGAAGCAAGAAACGGGAGTACTGCTCTGAGCACGCCTTGG
AGGGAATGGTCAATCTTTCGAACACAAGGTGTGCTGATGATGGATGTTCT
AAGCTAGCGAACTACGGAAAGGGCGGAAACACGAAGCGAGTGTACTGCGC
TAAGAATGTCTTGGAAGGAATGGTCAATGTTAAGAACAAAAGGTGTGCTG
GGGATGGATGTTGTAAGATAGCGAGCTACGGGAATACCGGAAGCACCAAG
CGAGAGTTCTGCGCTAAGCATGCTTTGGAGGGAATGGTCAATGTTAAGAA
GAAAACGTGTGCCGGTGATGGGTGTTTTAAGACTTCAAGCTACGGAAAGG
CCGGAAGCACGAATCGAGAGTACTGCGCTGAGCATGCCTTAGAGGGGATG
GTCAATGTTTCGAGGAAAAGGTGTGTCGGTGATGGATGTAATAAGCTAGC
GAGCTACGGAACAGCTGGAAGCAAGAAATTGGAGTACTGCGCCGAGCACT
CATTGAAGGGGATGGTCAATATTTTGAAAAAAAATTGTGCCGGTGATGGG
TGTAATAAGACTTCGTGCTACGGAAATGCCAGAACCATGAAGAGAGAGTA
CTGCGCTGAGCATGCCTTGGAGGGAATGACCAATCTTTCGAAGAAAAGGA
GGTGTGCTGGTGTTGGATGTTCTAAGCTAGCGAGCTACGGGAAGACTGGA
AGCAAGAAACGAGAGTACTGCACCGAGCATTCCTTAGAGGAAATGTGTAT
CGGGTATTCCGCCGAGCATATATTCGAGGAGGCGGTTAATGTTTCGAAGA
AAATGGGTTCAGGGGATAGATGCTCTAACATATCTCCATGCGAAGGGCCC
GGCAGCGTGAAGCGGGATTACTGTGCAAAACATGCTTTGGAGGGCATGGT
GTGTATCGTCCCACACATCATTCCAAGTTCCAGGAAGCGGGTGTCGAAGA
TATGTATAACCGATAGTAAGGTTAGAGTCCCCTTTTCCGAGGCTGCATCA
TCAGTTGCTGTTTTGATGAAGTCAGAGATATCAGTAACTAAATCCAAGTA
GTTGTGCCGGTGATGGGTGTAATAAGACTTCGTGCTACGGAAATGCCAGA
ACCATGAAGAGAGAGTACTGCGCTGAGCATGCCTTGGAGGGAATGACCAA
TCTTTCGAAGAAAAGGAGGTGTGCTGGTGTTGGATGTTCTAAGCTAGCGA
GCTACGGGAAGACTGGAAGCAAGAAACGAGAGTACTGCACCGAGCATTCC
TTAGAGGAAATGTGTATCGGGTATTCCGCCGAGCATATATTCGAGGAGGC
GGTTAATGTTTCGAAGAAAATGGGTTCAGGGGATAGATGCTCTAACATAT
CTCCATGCGAAGGGCCCGGCAGCGTGAAGCGGGATTACTGTGCAAAACAT
GCTTTGGAGGGCATGGTGTGTATCGTCCCACACATCATTCCAAGTTCCAG
GAAGCGGGTGTCGAAGATATGTATAACCGATAGTAAGGTTAGAGTCCCCT
TTTCCGAGGCTGCATCATCAGTTGCTGTTTTGATGAAGTCAGAGATATCA
GTAACTAAATCCAAGTAG
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