mRNA_H-elongata_contig53805.12740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53805.12740.1
Unique NamemRNA_H-elongata_contig53805.12740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53805.12740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53805contigH-elongata_contig53805:2409..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.924786-CDS-H-elongata_contig53805:2410..24831622930876.924786-CDS-H-elongata_contig53805:2410..2483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53805 2411..2483 -
1691679607.8838-CDS-H-elongata_contig53805:2410..24831691679607.8838-CDS-H-elongata_contig53805:2410..2483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53805 2411..2483 -
1622930876.9447842-CDS-H-elongata_contig53805:3129..32451622930876.9447842-CDS-H-elongata_contig53805:3129..3245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53805 3130..3245 -
1691679607.8939435-CDS-H-elongata_contig53805:3129..32451691679607.8939435-CDS-H-elongata_contig53805:3129..3245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53805 3130..3245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53805.12740.1prot_H-elongata_contig53805.12740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53805 2411..3245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53805.12740.1

>prot_H-elongata_contig53805.12740.1 ID=prot_H-elongata_contig53805.12740.1|Name=mRNA_H-elongata_contig53805.12740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
STKAGATRARTSTPRKRPTRTLIFLCSSAILLRPLLTGTRRRLAGDDVDC
LNAREVDDGDEWA
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mRNA from alignment at H-elongata_contig53805:2409..3245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53805.12740.1 ID=mRNA_H-elongata_contig53805.12740.1|Name=mRNA_H-elongata_contig53805.12740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig53805:2409..3245- (Himanthalia elongata Himel1 dioecious)
AGCACAAAGGCAGGCGCAACAAGGGCAAGGACAAGCACGCCACGAAAAAG
GCCAACTCGAACGCTCATCTTTCTCTGTTCTTCAGCGATACTGCTTCGAC
CACTCTTGACAGGCACGCAGCACCACCGCGACCATGCCATACTATGTTTG
ACGACACATTGCCGAGCTTGGTGATAGCTCGTTTGTCGTCTCGTTAGAGC
CATGATTAGAGCCATAGTTCGCTTGTTGTGTTCTCAATAGTACGGTAGCA
AGATATCGTTGTAGTGTAGTATAGTATAATTAATATAATTTGCATTATCC
GCGTTATAGTAGCCGGTTTGGTATTTTAAGGAGGCTTCTGTGAGTCCCGT
AGCCCCCTCCCCCGTTAACGTATTTCAATACTTTTACCCAACTCGCCATT
TTGCACTTTATTCTATATAGAGTTACGAATTCAGTCAGGGTGATCGCGAA
TATGTCTACGGTATTCTTAGAATACTGATACGCTGACCACGGGCCGGCCT
GATTTCTTGCTAGAGCTACGGTACATAATTTAGATCATATACAGTACCTC
ACTTTCACTCTACCTTGTTCATATTAATAGTACCGGTAGTTATTTATGTT
AGGTGCATCATATTCACCAGCGCTGTTGTTTCTTCAGCTCTCTATTATAA
TACTATATTGTACTGCCAAGCTCTAATCGCTTTCGTAGTGGAACCGGCGG
CTCCCCTTCCACTTTTGACCATGCATCCTTCATCCATATGGAACTCCTCA
ATGTTGCTGCAGCCGCAGACGGCTTGCTGGGGACGATGTGGATTGCCTGA
ATGCTCGCGAAGTTGATGATGGTGATGAATGGGCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig53805:2409..3245-

>mRNA_H-elongata_contig53805.12740.1 ID=mRNA_H-elongata_contig53805.12740.1|Name=mRNA_H-elongata_contig53805.12740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig53805:2409..3245- (Himanthalia elongata Himel1 dioecious)
AGCACAAAGGCAGGCGCAACAAGGGCAAGGACAAGCACGCCACGAAAAAG
GCCAACTCGAACGCTCATCTTTCTCTGTTCTTCAGCGATACTGCTTCGAC
CACTCTTGACAGGCACAGCACAAAGGCAGGCGCAACAAGGGCAAGGACAA
GCACGCCACGAAAAAGGCCAACTCGAACGCTCATCTTTCTCTGTTCTTCA
GCGATACTGCTTCGACCACTCTTGACAGGCACCCGCAGACGGCTTGCTGG
GGACGATGTGGATTGCCTGAATGCTCGCGAAGTTGATGATGGTGATGAAT
GGGCCCCGCAGACGGCTTGCTGGGGACGATGTGGATTGCCTGAATGCTCG
CGAAGTTGATGATGGTGATGAATGGGCC
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