mRNA_H-elongata_contig53788.12737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig53788.12737.1
Unique Name	mRNA_H-elongata_contig53788.12737.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: D8LRB2_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRB2_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 6.750e-69
Identity = 124/162 (76.54%), Postives = 144/162 (88.89%), Query Frame = 2

Query:  821 TTAVTEPHLKTAGQPLKHADTAKSPKGVSTDLQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGL-EQEGEDSDIDF 1303
            TTAVTEPHLKTAGQPL HA+ A+SP G+STDLQ KL+ALKLRRKHRF+ MRIEGTEVVAETV AP+ GP EL+AALP+SDCRYAVYDQ I+T DGRK +KLFFF+W+PHNATP NKM Y +GKVTV+QRLEG+YDVAA+ F D+EVALGL +++ EDSDIDF
Sbjct:  406 TTAVTEPHLKTAGQPLTHANRAESPTGMSTDLQDKLKALKLRRKHRFVTMRIEGTEVVAETVAAPAEGPAELKAALPYSDCRYAVYDQAIVTADGRKANKLFFFTWVPHNATPHNKMAYSHGKVTVRQRLEGLYDVAASSFGDVEVALGLVDEDEEDSDIDF 567

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A835ZF29_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF29_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.240e-41
Identity = 77/128 (60.16%), Postives = 97/128 (75.78%), Query Frame = 2

Query:  926 LRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQEGEDSDIDFEN 1309
            L+ LKLRRK+RFLV+RIEG EVV +    P+ G  +L AALPFSDCRY VYDQ+  T DGRKTS+L F SWLPHNATP  KM Y +GK  V++R+EG++DVAA+ F D+  ALG+E + EDSD D ++
Sbjct:    4 LKDLKLRRKYRFLVLRIEGGEVVPDATAPPAAGAPQLEAALPFSDCRYCVYDQDYTTDDGRKTSRLLFISWLPHNATPYAKMAYAHGKTAVRRRMEGLFDVAASAFADVAAALGIEDD-EDSDSDLDS 130

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: K3WUI7_GLOUD (ADF-H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI7_GLOUD)

HSP 1 Score: 140 bits (352), Expect = 1.130e-34
Identity = 74/164 (45.12%), Postives = 107/164 (65.24%), Query Frame = 2

Query:  836 EPHLKTAGQP--LKHADTAKSPKGVST---DLQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQ-EGEDSDIDFEN 1309
            EPH+KTAG P  ++H D    P    T   ++ ++ + LK+RRKHRF++ +I+G ++V +  G P+ G  +   ALP SDCRYAVYD E LT DGRK+SKLFF +W+PHN+ PQ KM Y + K T++   +G  DV AN  ++IE ++G+   +  DS  DFE+
Sbjct:    3 EPHMKTAGVPKYIRHQDDV--PTNAITPAANVAAEFKQLKMRRKHRFVLFKIDGAQMVVDATGPPNAGFADFLRALPDSDCRYAVYDHEFLTSDGRKSSKLFFVTWIPHNSNPQFKMAYTHAKSTIRAVCDGALDVNANTKKEIEQSMGVTSGDASDSGSDFED 164

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A8K1CHH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHH4_PYTOL)

HSP 1 Score: 135 bits (341), Expect = 3.340e-33
Identity = 74/165 (44.85%), Postives = 111/165 (67.27%), Query Frame = 2

Query:  836 EPHLKTAG--QPLKHAD----TAKSPKGVSTDLQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQ-EGEDSDIDFEN 1309
            EPHLKTAG  Q ++H D     A +P   S ++ ++ + LK+RRKHRF++ RIEG +VV + VGAP++   +   ALP S+CRYAVYD E +T DGRK+SKLFF +W+P N+ P  KM Y + K T++   +G +DV A + +++E  +G+   +G DSD +F++
Sbjct:    3 EPHLKTAGVAQYIRHQDDVPVNAITP---SEEVTAEFKQLKMRRKHRFVLFRIEGAQVVVDGVGAPTSSFNDFLNALPDSECRYAVYDHEFITGDGRKSSKLFFVTWIPQNSHPGFKMAYTHAKSTIRAVCDGCFDVNAVIKKEVEQGMGITNADGSDSDSEFDD 164

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A2D4BDZ2_PYTIN (ADF-H domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDZ2_PYTIN)

HSP 1 Score: 128 bits (321), Expect = 1.640e-30
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 2

Query:  836 EPHLKTAGQPLKHA----DTAKSPKGVSTDLQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQ-EGEDSDIDFEN 1309
            EPHLKTAG P K+A    D + S    + D+ ++ + LK+RRK RF++ RIEG E+V ++ G P+    +  +ALP  +CRYAVYD E +T DGRK+SKLFF +W+P ++ P  KM Y + K T++   EG  D+ A M  +IE  +G+    G DSD +F++
Sbjct:    3 EPHLKTAGVP-KYARHQEDVSVSAITPTADVTTEFKQLKMRRKSRFVLFRIEGAEIVVDSTGPPNATFRDFLSALPDLECRYAVYDHEYVTPDGRKSSKLFFVTWIPQSSNPNFKMAYTHAKPTIRAVCEGCIDLNAVMKTEIEEGMGVNDGAGSDSDSEFDD 164

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A3R7G6H8_9STRA (ADF-H domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G6H8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.240e-30
Identity = 75/170 (44.12%), Postives = 108/170 (63.53%), Query Frame = 2

Query:  818 KTTAVTEPHLKTAG--QPLKHADTAKSPKGVSTD-LQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLE---QEGEDSDIDFEN 1309
            K   + EPH+KTAG  Q ++H D   +     TD + ++ + LK+RRK+R++++RIE   VV ++   PS   ++  AALP SDCRYAVYD E LT DGRK+SK+FF SW+P N+ P  KM Y + K  V+   EG +DV+A + +  EVA G+E    +  DSD +FE+
Sbjct:   28 KNINMAEPHMKTAGVAQYIRHQDDVPANAITPTDEVIAEFKQLKMRRKYRYVLLRIEAAHVVVDSTAPPSATFKDFEAALPDSDCRYAVYDHEFLTSDGRKSSKIFFVSWIPQNSHPGFKMAYTHAKSAVRAVCEGCFDVSAVIKK--EVAQGMEITSGDASDSDSEFED 195

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A024UN70_9STRA (ADF-H domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UN70_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.310e-29
Identity = 63/155 (40.65%), Postives = 95/155 (61.29%), Query Frame = 2

Query:  836 EPHLKTAGQPLKHADTAKS--PKGVSTDLQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQEGEDSD 1294
            EPH KTAG PL++A+   S  P   + +  +  + +K++RK RF+  RI+G ++V +  G P+    +L AALP SDCRY +YD +IL  DGR++SKL+F  W P  A P +KM Y +GK   +   +G  D+ A+   D++ ALGL  + +D D
Sbjct:    3 EPHTKTAGVPLQYANAGASTGPIHPTEEAVAAFKDIKMKRKFRFVFYRIDGAQIVVDKAGPPTGTHVDLMAALPHSDCRYVIYDHDILLPDGRRSSKLYFLFWAPPAAPPNSKMAYSHGKTAFRAHCDGCLDINASEIVDVQSALGLATDDDDDD 157

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: W2GSY4_PHYPR (ADF-H domain-containing protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=W2GSY4_PHYPR)

HSP 1 Score: 124 bits (312), Expect = 2.750e-29
Identity = 68/162 (41.98%), Postives = 104/162 (64.20%), Query Frame = 2

Query:  836 EPHLKTAG--QPLKHADTAKSPKGVSTD-LQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGL-EQEGEDSDIDFEN 1309
            EPH+KTAG  Q ++H D   +     TD + ++ + LK+RRK+R++++RIE  +VV +    PS    +  AALP SDCRYAVYD E LT DGRK+SKLFF +W+P N+ P  KM Y + K  ++   EG ++V+A + ++I + + + +    DSD +FE+
Sbjct:    3 EPHMKTAGVAQFIRHQDDVPANAIAPTDAVVAEFKQLKMRRKYRYILLRIEADKVVVDATAPPSETFADFSAALPESDCRYAVYDHEFLTADGRKSSKLFFVTWIPQNSHPGFKMAYTHAKSAIQSVCEGCFEVSAVIKKEIALGMNITDGNASDSDSEFED 164

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A7S2C4C5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4C5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.180e-29
Identity = 70/158 (44.30%), Postives = 97/158 (61.39%), Query Frame = 2

Query:  836 EPHLKTAGQPLKHADTAKSPKGVSTDLQSKLRALKLRRKHRFLVMRIE-GTE-VVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGL-EQEGEDSDID 1300
            E HLKT G+  +     K+   VS +       +K+RRKH++++ +I+  TE +V E  GA     EE +A+LPFS+CRY VY+ E  T DGR T K+FF SW+P+NATP  KM Y   K  ++  L+GV+D +    E IEVA G+ E EGE+SD D
Sbjct:   10 ENHLKTGGEQKECQGKGKAGT-VSDECYPAFEQMKIRRKHKYIIFKIDTDTEAIVIEKTGAKKATLEEFKASLPFSECRYCVYEHEYTTHDGRPTDKIFFMSWMPNNATPYGKMAYAEAKGVIRGLLDGVFDSSVTALEQIEVAFGITEDEGEESDGD 166

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BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Match: A0A484DX78_BRELC (ADF-H domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DX78_BRELC)

HSP 1 Score: 124 bits (311), Expect = 3.750e-29
Identity = 68/164 (41.46%), Postives = 101/164 (61.59%), Query Frame = 2

Query:  830 VTEPHLKTAG--QPLKHADTAKSPKGVSTD-LQSKLRALKLRRKHRFLVMRIEGTEVVAETVGAPSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATPQNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQ-EGEDSDIDFEN 1309
            +TEPH+KTAG  Q ++H D   +     TD + ++ + LK+RRK+R+ + RIE  ++V +    PS    +  AALP SDCRYAVYD +    DGRKTSKLFF +W+PHN+ P  KM Y + K   +   EG Y+V+A   +D+ + + +   +  DSD +FE+
Sbjct:    1 MTEPHMKTAGVAQYIRHQDDVPANAIAPTDAVVAEFKQLKMRRKYRYALFRIEADKIVVDITAPPSASFADFCAALPDSDCRYAVYDHDYQVSDGRKTSKLFFVTWIPHNSHPGFKMAYTHAKSAFQGVCEGCYEVSAVTKKDVAIGMNISAGDASDSDSEFED 164

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot

BLAST of mRNA_H-elongata_contig53788.12737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRB2_ECTSI	6.750e-69	76.54	ADF-H domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A835ZF29_9STRA	2.240e-41	60.16	ADF-H domain-containing protein n=1 Tax=Tribonema ...	[more]
K3WUI7_GLOUD	1.130e-34	45.12	ADF-H domain-containing protein n=1 Tax=Globispora...	[more]
A0A8K1CHH4_PYTOL	3.340e-33	44.85	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A2D4BDZ2_PYTIN	1.640e-30	43.56	ADF-H domain-containing protein n=1 Tax=Pythium in...	[more]
A0A3R7G6H8_9STRA	2.240e-30	44.12	ADF-H domain-containing protein n=3 Tax=Phytophtho...	[more]
A0A024UN70_9STRA	2.310e-29	40.65	ADF-H domain-containing protein n=1 Tax=Aphanomyce...	[more]
W2GSY4_PHYPR	2.750e-29	41.98	ADF-H domain-containing protein n=17 Tax=Peronospo...	[more]
A0A7S2C4C5_9STRA	3.180e-29	44.30	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A484DX78_BRELC	3.750e-29	41.46	ADF-H domain-containing protein n=1 Tax=Bremia lac...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig53788	contig	H-elongata_contig53788:71..3308 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	250.8
Seed ortholog evalue	8.3e-64
Seed eggNOG ortholog	2880.D8LRB2
Preferred name	CFL2
KEGG ko	ko:K05765,ko:K10363
KEGG Pathway	ko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
GOs	GO:0000003,GO:0000278,GO:0000281,GO:0000302,GO:0000902,GO:0000904,GO:0000910,GO:0001101,GO:0001558,GO:0001667,GO:0001755,GO:0001838,GO:0001841,GO:0001842,GO:0001952,GO:0001954,GO:0002009,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0003779,GO:0005102,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005829,GO:0005856,GO:0005865,GO:0005884,GO:0005886,GO:0005911,GO:0005938,GO:0006464,GO:0006468,GO:0006606,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007154,GO:0007162,GO:0007163,GO:0007165,GO:0007166,GO:0007264,GO:0007265,GO:0007266,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007517,GO:0007519,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008289,GO:0008360,GO:0008361,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009826,GO:0009856,GO:0009860,GO:0009870,GO:0009888,GO:0009893,GO:0009932,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010469,GO:0010591,GO:0010592,GO:0010593,GO:0010604,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010720,GO:0010769,GO:0010810,GO:0010811,GO:0010927,GO:0010941,GO:0010975,GO:0010976,GO:0014020,GO:0014031,GO:0014032,GO:0014033,GO:0014070,GO:0014706,GO:0014823,GO:0014866,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016049,GO:0016310,GO:0016331,GO:0016363,GO:0016477,GO:0017038,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021915,GO:0022008,GO:0022402,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022898,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030016,GO:0030017,GO:0030018,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030041,GO:0030042,GO:0030043,GO:0030054,GO:0030154,GO:0030155,GO:0030162,GO:0030175,GO:0030239,GO:0030240,GO:0030307,GO:0030308,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030496,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030838,GO:0030863,GO:0030864,GO:0030900,GO:0031002,GO:0031032,GO:0031090,GO:0031252,GO:0031323,GO:0031325,GO:0031334,GO:0031344,GO:0031345,GO:0031346,GO:0031347,GO:0031349,GO:0031674,GO:0031915,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032231,GO:0032232,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032432,GO:0032501,GO:0032502,GO:0032535,GO:0032870,GO:0032878,GO:0032879,GO:0032880,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0033036,GO:0033043,GO:0033267,GO:0033365,GO:0033554,GO:0034097,GO:0034399,GO:0034504,GO:0034599,GO:0034612,GO:0034613,GO:0034614,GO:0034622,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035091,GO:0035148,GO:0035239,GO:0035295,GO:0035556,GO:0035690,GO:0035722,GO:0035821,GO:0036211,GO:0036379,GO:0036477,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042692,GO:0042742,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043197,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043269,GO:0043270,GO:0043292,GO:0043412,GO:0043434,GO:0043624,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044309,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044706,GO:0044788,GO:0044794,GO:0044877,GO:0045088,GO:0045089,GO:0045184,GO:0045202,GO:0045214,GO:0045472,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0045792,GO:0045862,GO:0045926,GO:0045927,GO:0046677,GO:0046686,GO:0046716,GO:0046907,GO:0048046,GO:0048167,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048584,GO:0048588,GO:0048589,GO:0048598,GO:0048638,GO:0048640,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048762,GO:0048814,GO:0048856,GO:0048863,GO:0048864,GO:0048868,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050773,GO:0050776,GO:0050778,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0050896,GO:0051014,GO:0051015,GO:0051017,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051258,GO:0051261,GO:0051270,GO:0051271,GO:0051272,GO:0051301,GO:0051493,GO:0051494,GO:0051495,GO:0051510,GO:0051511,GO:0051641,GO:0051649,GO:0051674,GO:0051702,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0051851,GO:0051893,GO:0051894,GO:0051960,GO:0051962,GO:0055001,GO:0055002,GO:0055044,GO:0060249,GO:0060255,GO:0060284,GO:0060322,GO:0060341,GO:0060429,GO:0060485,GO:0060491,GO:0060537,GO:0060538,GO:0060548,GO:0060560,GO:0060562,GO:0060571,GO:0060998,GO:0060999,GO:0061001,GO:0061061,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070301,GO:0070555,GO:0070671,GO:0070727,GO:0070741,GO:0070848,GO:0070849,GO:0070887,GO:0070925,GO:0071236,GO:0071310,GO:0071345,GO:0071347,GO:0071349,GO:0071354,GO:0071356,GO:0071362,GO:0071363,GO:0071364,GO:0071375,GO:0071417,GO:0071495,GO:0071689,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072175,GO:0072594,GO:0080090,GO:0080134,GO:0090066,GO:0090109,GO:0090732,GO:0097060,GO:0097237,GO:0097435,GO:0097447,GO:0097458,GO:0098542,GO:0098590,GO:0098794,GO:0098858,GO:0099080,GO:0099081,GO:0099175,GO:0099177,GO:0099512,GO:0099513,GO:0099568,GO:0099601,GO:0110053,GO:0120025,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1900006,GO:1900449,GO:1900451,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1901881,GO:1901888,GO:1901890,GO:1901981,GO:1902743,GO:1902744,GO:1902745,GO:1902903,GO:1902904,GO:1902905,GO:1902936,GO:1902950,GO:1902951,GO:1903047,GO:1903391,GO:1903393,GO:1903827,GO:1903829,GO:1904062,GO:1904064,GO:1904783,GO:1905809,GO:1905871,GO:1905873,GO:1905874,GO:1905875,GO:1990314,GO:2000026,GO:2000114,GO:2000145,GO:2000146,GO:2000147,GO:2000273,GO:2000310,GO:2000769,GO:2000771,GO:2000782,GO:2000784,GO:2000812,GO:2000814,GO:2001257,GO:2001259
EggNOG free text desc.	actin filament depolymerization
EggNOG OGs	KOG1735@1,KOG1735@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04131,ko04147,ko04812
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Actin-depolymerising factor homology domain
Ec32 ortholog	Ec-06_003170.1
Exons	2
Model size	2596
Cds size	903
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig53788.12737.1	prot_H-elongata_contig53788.12737.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig53788 1355..2899 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930876.7163374-UTR-H-elongata_contig53788:70..1354	1622930876.7163374-UTR-H-elongata_contig53788:70..1354	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53788 71..1354 -
1691679607.7794554-UTR-H-elongata_contig53788:70..1354	1691679607.7794554-UTR-H-elongata_contig53788:70..1354	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53788 71..1354 -
1622930876.760204-UTR-H-elongata_contig53788:2899..3308	1622930876.760204-UTR-H-elongata_contig53788:2899..3308	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53788 2900..3308 -
1691679607.8210819-UTR-H-elongata_contig53788:2899..3308	1691679607.8210819-UTR-H-elongata_contig53788:2899..3308	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig53788 2900..3308 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930876.7300417-CDS-H-elongata_contig53788:1354..1498	1622930876.7300417-CDS-H-elongata_contig53788:1354..1498	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53788 1355..1498 -
1691679607.803182-CDS-H-elongata_contig53788:1354..1498	1691679607.803182-CDS-H-elongata_contig53788:1354..1498	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53788 1355..1498 -
1622930876.746602-CDS-H-elongata_contig53788:2140..2899	1622930876.746602-CDS-H-elongata_contig53788:2140..2899	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53788 2141..2899 -
1691679607.8132854-CDS-H-elongata_contig53788:2140..2899	1691679607.8132854-CDS-H-elongata_contig53788:2140..2899	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig53788 2141..2899 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig53788:71..3308-
coding sequence from alignment at H-elongata_contig53788:71..3308-

protein sequence of mRNA_H-elongata_contig53788.12737.1

>prot_H-elongata_contig53788.12737.1 ID=prot_H-elongata_contig53788.12737.1|Name=mRNA_H-elongata_contig53788.12737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
MEVKGNMGDGGRKVNNAGAGRCAVNGNAVLGSSEMSFHHGRDTMNAHSDP
ESTRQNQEEPEGRHRSPSQNGHMLSQANGGISGIENQSTNHQSAASGSAP
VVASSPAEGTIMGGYNSAMLAGSVAAAGAAGAVAAPKTTAVTEPHLKTAG
QPLKHADTAKSPKGVSTDLQSKLRALKLRRKHRFLVMRIEGTEVVAETVG
APSTGPEELRAALPFSDCRYAVYDQEILTRDGRKTSKLFFFSWLPHNATP
QNKMVYLYGKVTVKQRLEGVYDVAANMFEDIEVALGLEQEGEDSDIDFEN
*

mRNA from alignment at H-elongata_contig53788:71..3308-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig53788.12737.1 ID=mRNA_H-elongata_contig53788.12737.1|Name=mRNA_H-elongata_contig53788.12737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3238bp|location=Sequence derived from alignment at H-elongata_contig53788:71..3308- (Himanthalia elongata Himel1 dioecious)
GCCGGAAGCCCTTCTCCCGCTCAACCCGGGGGAGCCTCAGGAAGAGGACA
GAACTTCGGCGGCGAGACCCGAAGTAGGTCATCAGAGAGCAGCTTCTGCG
GAACTTGCCCCGGTAACAGCAACGCCAGCGATAGAAGAGGAAGAAGGGGA
CCCTTCCCAGGAGAACGCGGCGGCCCCCGAGGGTCTCTCTGCCGGTGGAA
TCGACTCTCGTATCGGTGGCGGTGCTTCTGCTGCAACAACAGTAAGTGTG
GCAGCGGGAGCTGAAAGCTTACGGCCGGGGTGCGAGGGCCTTGAGGAGAC
CAAGGGGGACGGGGCGTGGAATGAATCGGGTGTGCTGTCAGGGGACGGCT
TTGTAGGGCCAGTTGGGCTTGGGGTTTCGACGGAAGCGGATCAATATGCT
ATAAGGGGTATGGAAGTTAAGGGGAACATGGGTGATGGAGGGAGGAAGGT
AAACAATGCAGGGGCAGGGCGGTGTGCGGTCAACGGGAACGCGGTGCTCG
GGAGCAGCGAAATGTCCTTCCACCACGGGAGAGACACAATGAATGCCCAC
AGCGACCCGGAAAGCACCCGGCAGAATCAAGAGGAGCCTGAGGGGCGACA
TCGATCGCCGTCGCAAAACGGACACATGTTAAGTCAGGCCAACGGAGGAA
TATCAGGAATAGAAAACCAAAGCACCAATCATCAGTCTGCTGCTAGTGGT
TCCGCGCCTGTCGTCGCCTCTTCCCCTGCCGAAGGCACCATAATGGGAGG
GTACAACAGCGCGATGTTGGCGGGATCGGTTGCTGCGGCAGGCGCTGCTG
GAGCTGTCGCAGCGCCGAAGACGACGGCGGTGACCGAGCCGCACCTCAAG
ACCGCGGGTCAGCCTCTGAAACATGCAGACACCGCGAAGTCGCCAAAAGG
GGTGTCGACCGATCTTCAGAGTAAGCTGAGGGCGCTGAAGCTTCGCCGCA
AGCACCGCTTCCTCGTGATGCGCATCGAGGGGACGGAGGTGGTGGCGGAG
ACCGTGGGTGCGCCGTCGACAGGGCCAGAGGAGCTGAGGGCGGCGTTGCC
CTTCAGCGACTGTCGATACGCGGTGTACGACCAGGAGATTCTGACTCGTG
ATGGCCGCAAGACGAGCAAGCTCTTCTTTTTCTCGTGGCTGCCCCACAAC
GCTACGCCACAAAATAAGGTGTGCCGAGAGTATTTTCTTGGGCGGCGGGA
GGAAGAGGAGGTTTCGTCGTTCGGTGGTTGTTATGTTTTGTTGGCTCCAC
CTAAGGAAAAATATGCCATTAGTTATACTAGAATATTGAACCTAAGCGGC
AGATGGACGGGTCGCATCATTGGAAACATGGCCTTTACGAGCGGAGGAAG
CTGTAGCGGTATTACCCACCCTGTTTTTTGGCAGCTTTGTCGTTGCCGCC
GTCCTCTTGTTACATGTGCTATACAAGAAAAATGCTGAAATAATTGCACT
GCTACCGTCTATGAGCCTGTGTATCGAATGTCGCTTCGAGAGCCTCCAGG
AGTTCTACTCTCCCTCACACAAACACACCCACATTCATCCCTCACCCGCC
CGCCGCCACTACCTGTGATCTTTGGGTGTGTCGGTGAAGAAACCCGAGGT
TGATAGGACACGCGCGGCACCATGGCTACCAGCCTGTTTCCTTCGAATCG
GTCGCGGCGGATCAGTTCTCTCGATGTTTTTGTGATGTCTCTCTGTTTAA
CCCCCCCCCCCCGTCTCAAAGAAAGCTAAACAGAAAACACACACAAACAC
AAATACTTCAATTGTACTCGCGAATATACTCGAGATTTTTTTTTATTGCA
CGATAAACAGATGGTGTACCTCTATGGAAAGGTCACAGTAAAGCAGCGGC
TGGAGGGAGTATACGACGTGGCGGCCAACATGTTCGAGGACATCGAGGTC
GCGCTGGGATTGGAACAAGAAGGAGAAGACTCGGACATCGACTTTGAAAA
TTAATTTACCGACCTTCACCTCCATTCCCCATCGCTCCCCTTCTCCCTAT
CCGTATTGCCCTCCTTTTATTCTCTTTTTCTCCCTGCTAGTGTGTCGTTC
TTTTTCGACTCTTGGTTTCCGTTAGCTGTTTGTCCGTTTTGGATGGTGAG
CCATTTTTTCACGTGCGAGCAAGTCGGGGTGGAGAAGCGTGCAGCCCCCC
CTTAACAAGTTTGCGAAATAATGAACCTTCGGCCTTCCTTCGAGACGAAG
GTTGAAACGACACAGCGTCACGAAATCCGTCTGATACGTTATTCGTAACG
TTATACGTTCTGATTCTCTTTTATACTCTTTTTAGACACGGATTGACCAC
CAGTAGGGTTTTGGTTGTGACTATCATTTGGCGATGTAACGGAGGGGGGC
GGGGGGCGACTAGGGAACGTTAAAGGTGGTGGCCCTCGTTGTGCGTACAT
GTGTTAAGCGGTCGATCGCTTGATTGTTTGCTGTGTTATCTTTAGACACG
GGTTGGCCATCAATAGGGTTTTGGTAGTTATCATGGTATTGCAAGGTATA
TGAGCGGGGTGTAGGGGGTGGTAAAGGTGATCCTCGTTATGCTACACATT
ATTCATGGGGTACGGAGAGTTTTGCACGACCGACCTAAGTCGTCCCTCGT
CTACCCCTGTAGCATTAAGGACTCGGGCGATTTTCGCCCACAAGGTTCAA
AAACGAGTCAGACTTCTTCATGTGCTCCTCAGTTTTGAGAGGCGTTAAGC
GTGAAAGGTCGGGGTTGGGATGTCGGGGCTTGCAGTCCACTCGAGTCTCG
GGCAAGCTGCTGGAGGCGATTGGTTTCACGTCTTCGCGCAGCCGTGTCAT
TAGTGAAAGGAACGCGCTAACCTCAGCTGTACTGGATCGTACTGTAGATT
GGCCATCCGACGACGAGGGCGCCGGGAAGAGCCCTTTGAGCTACAATGCA
GAACCATCAATTATTTTATCTGTACGTATATATACACAAGACTGTCCCTT
GATTTTTATTTTCTCTTTTTCCTTTCGTCGTGTGTATTTTTTTTTGTCTT
CTGGCTGTCTCCTCTTTTGTAATCGTTATTCGTGGGCACCCCCGCTAGTT
GTGTTTAGGACAGGACTTAAGGTTGCACGCCCCCGGCGGCGCATTATAAT
CTTAAGGGCAAGGAAATAATGTATGCATGAGTGTGTGTAGATTCGCGTGA
TGATAAAAACGGACTGCACTGCAAAAATCTTGGCCTGGGTGTTCGATTTT
TGTCGAGAGACTGGGTACACAGCAAAATTTTGCATGCC

Coding sequence (CDS) from alignment at H-elongata_contig53788:71..3308-

>mRNA_H-elongata_contig53788.12737.1 ID=mRNA_H-elongata_contig53788.12737.1|Name=mRNA_H-elongata_contig53788.12737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig53788:71..3308- (Himanthalia elongata Himel1 dioecious)
ATGGAAGTTAAGGGGAACATGGGTGATGGAGGGAGGAAGGTAAACAATGC
AGGGGCAGGGCGGTGTGCGGTCAACGGGAACGCGGTGCTCGGGAGCAGCG
AAATGTCCTTCCACCACGGGAGAGACACAATGAATGCCCACAGCGACCCG
GAAAGCACCCGGCAGAATCAAGAGGAGCCTGAGGGGCGACATCGATCGCC
GTCGCAAAACGGACACATGTTAAGTCAGGCCAACGGAGGAATATCAGGAA
TAGAAAACCAAAGCACCAATCATCAGTCTGCTGCTAGTGGTTCCGCGCCT
GTCGTCGCCTCTTCCCCTGCCGAAGGCACCATAATGGGAGGGTACAACAG
CGCGATGTTGGCGGGATCGGTTGCTGCGGCAGGCGCTGCTGGAGCTGTCG
CAGCGCCGAAGACGACGGCGGTGACCGAGCCGCACCTCAAGACCGCGGGT
CAGCCTCTGAAACATGCAGACACCGCGAAGTCGCCAAAAGGGGTGTCGAC
CGATCTTCAGAGTAAGCTGAGGGCGCTGAAGCTTCGCCGCAAGCACCGCT
TCCTCGTGATGCGCATCGAGGGGACGGAGGTGGTGGCGGAGACCGTGGGT
GCGCCGTCGACAGGGCCAGAGGAGCTGAGGGCGGCGTTGCCCTTCAGCGA
CTGTCGATACGCGGTGTACGACCAGGAGATTCTGACTCGTGATGGCCGCA
AGACGAGCAAGCTCTTCTTTTTCTCGTGGCTGCCCCACAACGCTACGCCA
CAAAATAAGATGGAAGTTAAGGGGAACATGGGTGATGGAGGGAGGAAGGT
AAACAATGCAGGGGCAGGGCGGTGTGCGGTCAACGGGAACGCGGTGCTCG
GGAGCAGCGAAATGTCCTTCCACCACGGGAGAGACACAATGAATGCCCAC
AGCGACCCGGAAAGCACCCGGCAGAATCAAGAGGAGCCTGAGGGGCGACA
TCGATCGCCGTCGCAAAACGGACACATGTTAAGTCAGGCCAACGGAGGAA
TATCAGGAATAGAAAACCAAAGCACCAATCATCAGTCTGCTGCTAGTGGT
TCCGCGCCTGTCGTCGCCTCTTCCCCTGCCGAAGGCACCATAATGGGAGG
GTACAACAGCGCGATGTTGGCGGGATCGGTTGCTGCGGCAGGCGCTGCTG
GAGCTGTCGCAGCGCCGAAGACGACGGCGGTGACCGAGCCGCACCTCAAG
ACCGCGGGTCAGCCTCTGAAACATGCAGACACCGCGAAGTCGCCAAAAGG
GGTGTCGACCGATCTTCAGAGTAAGCTGAGGGCGCTGAAGCTTCGCCGCA
AGCACCGCTTCCTCGTGATGCGCATCGAGGGGACGGAGGTGGTGGCGGAG
ACCGTGGGTGCGCCGTCGACAGGGCCAGAGGAGCTGAGGGCGGCGTTGCC
CTTCAGCGACTGTCGATACGCGGTGTACGACCAGGAGATTCTGACTCGTG
ATGGCCGCAAGACGAGCAAGCTCTTCTTTTTCTCGTGGCTGCCCCACAAC
GCTACGCCACAAAATAAGATGGTGTACCTCTATGGAAAGGTCACAGTAAA
GCAGCGGCTGGAGGGAGTATACGACGTGGCGGCCAACATGTTCGAGGACA
TCGAGGTCGCGCTGGGATTGGAACAAGAAGGAGAAGACTCGGACATCGAC
TTTGAAAATTAAATGGTGTACCTCTATGGAAAGGTCACAGTAAAGCAGCG
GCTGGAGGGAGTATACGACGTGGCGGCCAACATGTTCGAGGACATCGAGG
TCGCGCTGGGATTGGAACAAGAAGGAGAAGACTCGGACATCGACTTTGAA
AATTAA