mRNA_H-elongata_contig53743.12733.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: D7FMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMZ5_ECTSI) HSP 1 Score: 427 bits (1098), Expect = 8.660e-145 Identity = 218/262 (83.21%), Postives = 244/262 (93.13%), Query Frame = 1
Query: 1 QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
+CKKA+ VGR NRAGFADIGKAYARMAK+ +MGDK QAIAYLEDAQMEM+TKENER+I+TLQLE RKEAAA Y+DP+KALEAKERGNE FRAGQWA AI+EYEEAVKRDPTNAAYRNNLAAAL+KIGDFNAAKAACEKAL LD KYVKAWAKKGDIEFFMKEYHKALDSYKMGL VE NNSLCV+GV+KTT+KI++ +G+ADSERAAHAMADPEIQ ILTDP+VRQVL DFK+NP+ A+KAL N+DMRAKI+KL+AAGV+Q
Sbjct: 332 ECKKAVGVGRVNRAGFADIGKAYARMAKASSRMGDKSQAIAYLEDAQMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEARKALGNADMRAKIDKLVAAGVVQ 593
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A835ZGH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH8_9STRA) HSP 1 Score: 314 bits (804), Expect = 1.670e-100 Identity = 167/263 (63.50%), Postives = 200/263 (76.05%), Query Frame = 1
Query: 4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQADSERA--AHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
C+KAI+VGR NRA + D+ KAY R K+ K GD +AI + AQ+E + KE ER+++ +LE RK AA Y+DP+KAL AKERGNE+FRAG W AI EYEEAVKRDP+NA YRNNLA+AL KI DFN AKAA EKAL LDPKYVKAWAKKGDIEF MKEYHKAL+S++ GL +E +NSLC G++KT KI + D ER AHAMADPEIQ IL+DP+V+QVL D +++P QKAL N MRAKIEKLIAAG+LQ
Sbjct: 331 CQKAIDVGRANRASYEDLAKAYVRRGKAAAKAGDLGRAIEHYRSAQVEHYVKETERLLKNTELEWRKAQAAAYVDPEKALAAKERGNEHFRAGNWVDAIKEYEEAVKRDPSNAVYRNNLASALVKIMDFNGAKAAVEKALELDPKYVKAWAKKGDIEFVMKEYHKALESFQKGLDLENDNSLCKAGLQKTVAKIQSTGATPDEERERRAHAMADPEIQRILSDPVVQQVLQDAQQSPHELQKALANPGMRAKIEKLIAAGILQ 593
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: W7TJK4_9STRA (Stress-induced protein sti1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJK4_9STRA) HSP 1 Score: 310 bits (794), Expect = 2.850e-99 Identity = 160/264 (60.61%), Postives = 206/264 (78.03%), Query Frame = 1
Query: 1 QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQ-ADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
QC +AI+VGR NRA + D+ KA R K+ K GD AI DAQME K ER+I++ ++E +K+ Y+DP KA+EAK+RGNE FRAG+W A+ EY EA++RDP+NAAY NNLAAALSK+ DF+AAK ACEKA++LDPKYVKAWAKKGDIEFFMKEYH+AL+SYK GL++E NNSLCV+G++KT+ +I ++ Q AD ERAAH MADPE+QAIL DP+++QVL D +ENP+ ++AL + + AKIEKLI AGVL+T
Sbjct: 308 QCDEAIQVGRANRAPYPDVAKALVRKGKALAKQGDLANAIEAYRDAQMEHFDKTVERLIKSTEVERKKQEELAYVDPAKAVEAKDRGNEAFRAGKWPDAVKEYNEAIRRDPSNAAYHNNLAAALSKLMDFSAAKTACEKAIALDPKYVKAWAKKGDIEFFMKEYHRALESYKHGLEIEPNNSLCVQGLQKTSARIRDASSQEADMERAAHGMADPEVQAILGDPVIQQVLRDLQENPREGRQALSDPGVAAKIEKLINAGVLRT 571
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7R9U847_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U847_9STRA) HSP 1 Score: 271 bits (693), Expect = 1.810e-86 Identity = 147/260 (56.54%), Postives = 189/260 (72.69%), Query Frame = 1
Query: 4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVL 783
C +A+EVGR NRA F + K + R A+ D ++A+ AQ E K+ ER ++ L+LE R+ Y++P+ A EAK RGNE FRAG + AIAEYEEAVKRDP++A RNNLAAAL K+GDFN A + +KAL LD KYVKAWAKKGDIEF+MKEYHKA++SY+ GL V+++N LC +G++K I+ S+G D ER AHAMADPEIQ++L DP+V QV+ DFKENP AQ+A+QN M+AKI KL+AAGVL
Sbjct: 120 CDQAVEVGRANRAPFQSLAKPFVRKARIAKARNDYEEAMKQYHLAQREHRDKKIEREMKMLELEKRERERKAYVNPELAQEAKSRGNEKFRAGDFGGAIAEYEEAVKRDPSDAPIRNNLAAALQKVGDFNGALNSVKKALELDEKYVKAWAKKGDIEFYMKEYHKAMESYQKGLAVDDSNQLCRDGLQKVVAAINTSSGP-DEERLAHAMADPEIQSLLRDPVVVQVIRDFKENPSAAQQAMQNPGMQAKINKLMAAGVL 378
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7S4RC86_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC86_9STRA) HSP 1 Score: 277 bits (708), Expect = 2.780e-86 Identity = 152/266 (57.14%), Postives = 189/266 (71.05%), Query Frame = 1
Query: 4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG----QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
C KA+EVG+ N A + D KAY R AK+ K D +AI +AQ+E + K ERM++T++LE RK A Y D +KA EAK+RGN++FRA +WAKA+ YEEAVKR P NA RNNLAAAL KI DFN AK E+A+ +DPKY KAWA+KGDIE MKE HKALDSYK GL ++ +N+ C EG++K T +I+ A + ERA H +ADPEIQAI+ DP+V+QVL DF ENP A +A+ N MRAKIEKLIAAGVLQT
Sbjct: 317 CLKAVEVGKANMAPYEDRAKAYTRCAKAYQKKKDLDKAIEMCNEAQLECYDKATERMMKTMELERRKAAVLAYQDDEKAEEAKQRGNDHFRAKEWAKAVEAYEEAVKRAPKNAPIRNNLAAALCKIMDFNGAKMHIEEAVHIDPKYTKAWARKGDIEMVMKENHKALDSYKAGLAIDPDNAACKEGLRKCTAQINYGAATMTEEEKQERAQHGLADPEIQAIIQDPVVQQVLRDFNENPNAANQAMNNPSMRAKIEKLIAAGVLQT 582
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A6U3AUD0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3AUD0_9STRA) HSP 1 Score: 268 bits (686), Expect = 7.990e-86 Identity = 144/266 (54.14%), Postives = 194/266 (72.93%), Query Frame = 1
Query: 4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKI----SQSAGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
C KA+EVG+ +RA F D GKAY R AK+ K D + AI ++AQ+E + K+ +R+++T++LE +K A Y +KA EAK+RGNE+FR +W A+ YEEAVKR P NA RNNLAAAL KI DF+ A+ + E AL LDPKYVKAWA+KGDIE +MKEYHKA++SYK GL+++ +N C EG++K M+I S E+AAHAMADPEIQ+IL DP+++Q+L DF ENP AQ+A+Q+ +RAKIEKLIA+G+++T
Sbjct: 82 CLKAVEVGKEHRAPFEDRGKAYTRAAKAYQKKKDLENAIKMCQEAQLENYDKDTQRLLKTMELEKKKADALAYQSDEKAEEAKQRGNEHFRNKEWGPAVEAYEEAVKRAPKNAPIRNNLAAALCKIMDFSGAQRSIEVALELDPKYVKAWARKGDIEMYMKEYHKAMESYKKGLELDPDNKSCKEGLQKVQMQINYGRSNMTEAEKKEQAAHAMADPEIQSILQDPVMQQILKDFGENPNAAQQAMQDPTIRAKIEKLIASGIIET 347
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A812U018_SYMMI (HOP3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U018_SYMMI) HSP 1 Score: 272 bits (695), Expect = 2.950e-85 Identity = 150/263 (57.03%), Postives = 188/263 (71.48%), Query Frame = 1
Query: 1 QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQ-ADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
QC++AI+ GR+ RA + DI K Y RMA + +K D A AQ E K ER ++ L+LE +++A YI+P +EAKERGN FR + AI EYE+A+ RD TNAAYRNNLAAAL K+GDFN AK EK+L LD +YVKAWAKKGDIEFFMKEYH+ALDSYK GL++E +N+LC G+ KT I+ + + + ERAAHAMADPEIQ IL DPMVRQ L D +ENPQ AQ+AL + +RAKI+KLIA+G+LQ
Sbjct: 237 QCQEAIDFGRSKRAPYEDIAKLYHRMAAAYLKRDDFDTAKECYTKAQTEHFDKAIERKVKNLELEYKQKAVKAYINPALGVEAKERGNTAFRENDFPTAIREYEDAIMRDSTNAAYRNNLAAALLKMGDFNGAKREVEKSLELDNRYVKAWAKKGDIEFFMKEYHRALDSYKAGLQIEPDNALCTRGLSKTMAHINTTQSEEVNKERAAHAMADPEIQFILQDPMVRQTLQDLQENPQSAQRALNDPVIRAKIDKLIASGILQ 499
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7R9ZH81_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH81_9STRA) HSP 1 Score: 265 bits (678), Expect = 3.930e-85 Identity = 145/261 (55.56%), Postives = 190/261 (72.80%), Query Frame = 1
Query: 19 EVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG----QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
EVG+ NRA F + +A R A++ K GD +AI ++AQ+E + K +R+++TL+LE +K+ A +Y D +KA EAK+RGN +FR +WA A+ EYEEAVKR P NA RNNL+AAL KI DFN AK E+AL LDP+YVKAWA+KGDIE MKEYHKA+DSYK GL++E++N C G++K I+QSA + ERA HAMADPEIQAIL DP+V+QVL DF ENP A +A+++ MR KIEKLIA+G++QT
Sbjct: 49 EVGKENRAPFEERARALTRAARAAQKKGDMAKAIEMCKEAQLENYDKATDRLLKTLELEKKKKDALDYQDDEKAEEAKQRGNAHFRNKEWADAVKEYEEAVKRAPKNAPIRNNLSAALCKIMDFNGAKRQIEEALELDPRYVKAWARKGDIEVVMKEYHKAMDSYKAGLEIEKDNPTCKAGLQKVMGLINQSASTMTEEERKERAEHAMADPEIQAILADPVVQQVLRDFNENPNAANQAMRDPFMRGKIEKLIASGIVQT 309
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7S2V2W3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W3_9STRA) HSP 1 Score: 260 bits (664), Expect = 9.970e-85 Identity = 133/188 (70.74%), Postives = 159/188 (84.57%), Query Frame = 1
Query: 229 PDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQS--AGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
P+K +EAKE+GNE FRAG++A+AI EY EA KRDPTNAAY NNLAAALSK+GDFN AK ACEKAL LDP YVKAWAKKGDIEFFMKEYHKAL+SYK GL+VE NN LC +G+++T KI+++ +G+ D ERA H MADPE+QAIL+DP++R VL DF+ENP AQKAL + +RAKIEKL+AAGVLQ
Sbjct: 1 PEKGVEAKEKGNEFFRAGKFAEAINEYREATKRDPTNAAYHNNLAAALSKLGDFNTAKEACEKALQLDPTYVKAWAKKGDIEFFMKEYHKALESYKKGLEVESNNPLCQQGLQRTAQKINEANMSGEVDMERAQHGMADPEVQAILSDPVIRNVLRDFQENPMEAQKALADPTVRAKIEKLMAAGVLQ 188
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7S2I8L0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8L0_9STRA) HSP 1 Score: 262 bits (669), Expect = 4.770e-84 Identity = 148/267 (55.43%), Postives = 182/267 (68.16%), Query Frame = 1
Query: 4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG----QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQTG 792
C+KA+EVG+ N A F D KA R AK+ K D AI + AQ+E + K ERM++TL+LE RK + Y D +KA EAK+RGNE FRA WA+A+ VKR P NA RNNLAAAL KI DFN AK + A+ LDPKYVKAWA+KGDIE MKE HKA+DSYK GL ++ NN+ C EG++K + I+ A + ERA H +ADPEIQAI+ DPMV+QVL DF ENP A +A+++ MR KIEKLIAAGVLQTG
Sbjct: 24 CQKAVEVGKANMAPFEDRAKALTRCAKAYQKKKDLDNAIEMCKAAQLESYDKATERMLKTLELERRKASVLAYQDDEKAEEAKQRGNEAFRAKNWAEAVXXXXXXVKRAPKNAPIRNNLAAALCKIMDFNGAKNHIQVAIELDPKYVKAWARKGDIEMVMKENHKAMDSYKAGLAIDPNNAACKEGLRKCSAAINYGAANMTEEEKRERAEHGLADPEIQAIIQDPMVQQVLKDFNENPNAANQAMRDPHMRGKIEKLIAAGVLQTG 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53743.12733.1 >prot_H-elongata_contig53743.12733.1 ID=prot_H-elongata_contig53743.12733.1|Name=mRNA_H-elongata_contig53743.12733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMback to top mRNA from alignment at H-elongata_contig53743:164..2588+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53743.12733.1 ID=mRNA_H-elongata_contig53743.12733.1|Name=mRNA_H-elongata_contig53743.12733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2425bp|location=Sequence derived from alignment at H-elongata_contig53743:164..2588+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53743:164..2588+ >mRNA_H-elongata_contig53743.12733.1 ID=mRNA_H-elongata_contig53743.12733.1|Name=mRNA_H-elongata_contig53743.12733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig53743:164..2588+ (Himanthalia elongata Himel1 dioecious)back to top |