mRNA_H-elongata_contig53709.12727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53709.12727.1
Unique NamemRNA_H-elongata_contig53709.12727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53709.12727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53709contigH-elongata_contig53709:1358..2193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size836
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53709.12727.1prot_H-elongata_contig53709.12727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53709 1427..1912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.7425566-UTR-H-elongata_contig53709:1357..14261622930875.7425566-UTR-H-elongata_contig53709:1357..1426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53709 1358..1426 +
1691679607.4055052-UTR-H-elongata_contig53709:1357..14261691679607.4055052-UTR-H-elongata_contig53709:1357..1426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53709 1358..1426 +
1622930875.7787845-UTR-H-elongata_contig53709:1912..21931622930875.7787845-UTR-H-elongata_contig53709:1912..2193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53709 1913..2193 +
1691679607.4399478-UTR-H-elongata_contig53709:1912..21931691679607.4399478-UTR-H-elongata_contig53709:1912..2193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53709 1913..2193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.7625663-CDS-H-elongata_contig53709:1426..19121622930875.7625663-CDS-H-elongata_contig53709:1426..1912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 1427..1912 +
1691679607.4226108-CDS-H-elongata_contig53709:1426..19121691679607.4226108-CDS-H-elongata_contig53709:1426..1912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 1427..1912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53709.12727.1

>prot_H-elongata_contig53709.12727.1 ID=prot_H-elongata_contig53709.12727.1|Name=mRNA_H-elongata_contig53709.12727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MEEEKSQKETTSGSTRGEATAQKIMSLEGKLRPVRKNRHGGGVKKSLAAS
NAPESSARPNVGAPPEPMEEEKIQEETTGRSTLGEPTAQRIVALEEKLRP
LTASLNKFKNTTLLMKARCAHLSRGKTMGFKSSVYQIYQYNSIDKKRVRS
NSFIVGSTLKV*
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mRNA from alignment at H-elongata_contig53709:1358..2193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53709.12727.1 ID=mRNA_H-elongata_contig53709.12727.1|Name=mRNA_H-elongata_contig53709.12727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=836bp|location=Sequence derived from alignment at H-elongata_contig53709:1358..2193+ (Himanthalia elongata Himel1 dioecious)
AAGACCCTTGCTGCCAAAAATGCGCCGGAAAGCAGCACTCGGCCCAACTT
TGGTGCGCCCCCTCAGCCGATGGAGGAAGAAAAAAGCCAGAAAGAGACAA
CCAGTGGCAGCACTCGCGGAGAAGCCACCGCTCAGAAGATAATGTCTCTA
GAGGGAAAGCTGCGCCCTGTAAGGAAAAACCGGCATGGTGGTGGTGTTAA
GAAGTCTCTTGCTGCCAGCAATGCGCCTGAAAGCAGCGCTCGGCCCAACG
TTGGTGCGCCCCCTGAGCCGATGGAGGAAGAAAAAATCCAGGAAGAGACA
ACCGGTCGCAGCACTCTCGGAGAACCCACCGCTCAGAGGATAGTAGCTTT
AGAAGAAAAGCTGCGCCCTCTTACGGCGTCTCTAAACAAGTTCAAAAACA
CGACTCTTCTGATGAAGGCGCGGTGCGCTCACCTGTCTAGAGGTAAGACC
ATGGGTTTTAAATCGTCGGTATATCAAATATACCAATACAATTCAATCGA
CAAAAAACGTGTTCGCTCGAATTCTTTTATTGTAGGTTCGACATTGAAAG
TCTAATTAAATCGATATCCTACCCCCCGGATATGTCGTGATCGGAATGCT
TGCTATTATAGTGCTCGATGAAGATTCCTAGGTATCGTCAAATTATGATA
GGGTTTCCAGTGCAGGCATATTCATCAAGGTACAATGGTCGGCTACGCCT
GAACCTCAAGAGCGCCTATCTTTGTCTGAAATATTTCATGGGGTGGGGTG
GGGTAGAAACCGGGGTAGGTATCTTGGAATCAAATGTGGAGTCTACTGTA
AGCCCTTAAGGCTTTTGGACAAACGAACAATCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig53709:1358..2193+

>mRNA_H-elongata_contig53709.12727.1 ID=mRNA_H-elongata_contig53709.12727.1|Name=mRNA_H-elongata_contig53709.12727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig53709:1358..2193+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGAAGAAAAAAGCCAGAAAGAGACAACCAGTGGCAGCACTCGCGG
AGAAGCCACCGCTCAGAAGATAATGTCTCTAGAGGGAAAGCTGCGCCCTG
TAAGGAAAAACCGGCATGGTGGTGGTGTTAAGAAGTCTCTTGCTGCCAGC
AATGCGCCTGAAAGCAGCGCTCGGCCCAACGTTGGTGCGCCCCCTGAGCC
GATGGAGGAAGAAAAAATCCAGGAAGAGACAACCGGTCGCAGCACTCTCG
GAGAACCCACCGCTCAGAGGATAGTAGCTTTAGAAGAAAAGCTGCGCCCT
CTTACGGCGTCTCTAAACAAGTTCAAAAACACGACTCTTCTGATGAAGGC
GCGGTGCGCTCACCTGTCTAGAGGTAAGACCATGGGTTTTAAATCGTCGG
TATATCAAATATACCAATACAATTCAATCGACAAAAAACGTGTTCGCTCG
AATTCTTTTATTGTAGGTTCGACATTGAAAGTCTAAATGGAGGAAGAAAA
AAGCCAGAAAGAGACAACCAGTGGCAGCACTCGCGGAGAAGCCACCGCTC
AGAAGATAATGTCTCTAGAGGGAAAGCTGCGCCCTGTAAGGAAAAACCGG
CATGGTGGTGGTGTTAAGAAGTCTCTTGCTGCCAGCAATGCGCCTGAAAG
CAGCGCTCGGCCCAACGTTGGTGCGCCCCCTGAGCCGATGGAGGAAGAAA
AAATCCAGGAAGAGACAACCGGTCGCAGCACTCTCGGAGAACCCACCGCT
CAGAGGATAGTAGCTTTAGAAGAAAAGCTGCGCCCTCTTACGGCGTCTCT
AAACAAGTTCAAAAACACGACTCTTCTGATGAAGGCGCGGTGCGCTCACC
TGTCTAGAGGTAAGACCATGGGTTTTAAATCGTCGGTATATCAAATATAC
CAATACAATTCAATCGACAAAAAACGTGTTCGCTCGAATTCTTTTATTGT
AGGTTCGACATTGAAAGTCTAA
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