mRNA_H-elongata_contig53709.12728.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53709.12728.1
Unique NamemRNA_H-elongata_contig53709.12728.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53709.12728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53709contigH-elongata_contig53709:1739..3892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size339
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53709.12728.1prot_H-elongata_contig53709.12728.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53709 1769..3892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.6381686-UTR-H-elongata_contig53709:1738..17681622930875.6381686-UTR-H-elongata_contig53709:1738..1768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53709 1739..1768 +
1691679607.3496027-UTR-H-elongata_contig53709:1738..17681691679607.3496027-UTR-H-elongata_contig53709:1738..1768Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53709 1739..1768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.6541789-CDS-H-elongata_contig53709:1768..17991622930875.6541789-CDS-H-elongata_contig53709:1768..1799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 1769..1799 +
1691679607.3588421-CDS-H-elongata_contig53709:1768..17991691679607.3588421-CDS-H-elongata_contig53709:1768..1799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 1769..1799 +
1622930875.67419-CDS-H-elongata_contig53709:3164..33671622930875.67419-CDS-H-elongata_contig53709:3164..3367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 3165..3367 +
1691679607.3772984-CDS-H-elongata_contig53709:3164..33671691679607.3772984-CDS-H-elongata_contig53709:3164..3367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 3165..3367 +
1622930875.6911545-CDS-H-elongata_contig53709:3817..38921622930875.6911545-CDS-H-elongata_contig53709:3817..3892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 3818..3892 +
1691679607.391605-CDS-H-elongata_contig53709:3817..38921691679607.391605-CDS-H-elongata_contig53709:3817..3892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53709 3818..3892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53709.12728.1

>prot_H-elongata_contig53709.12728.1 ID=prot_H-elongata_contig53709.12728.1|Name=mRNA_H-elongata_contig53709.12728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MKARCAHLSRVIEQARVALPLRSPPLPDHTALTGWVWEEMSAMEESLAVV
GTASAAADIVATAAAAAAVIATAWERDQPAQDRVEGDEGEEQSFPSDAAP
EEV
back to top

mRNA from alignment at H-elongata_contig53709:1739..3892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53709.12728.1 ID=mRNA_H-elongata_contig53709.12728.1|Name=mRNA_H-elongata_contig53709.12728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2154bp|location=Sequence derived from alignment at H-elongata_contig53709:1739..3892+ (Himanthalia elongata Himel1 dioecious)
CTAAACAAGTTCAAAAACACGACTCTTCTGATGAAGGCGCGGTGCGCTCA
CCTGTCTAGAGGTAAGACCATGGGTTTTAAATCGTCGGTATATCAAATAT
ACCAATACAATTCAATCGACAAAAAACGTGTTCGCTCGAATTCTTTTATT
GTAGGTTCGACATTGAAAGTCTAATTAAATCGATATCCTACCCCCCGGAT
ATGTCGTGATCGGAATGCTTGCTATTATAGTGCTCGATGAAGATTCCTAG
GTATCGTCAAATTATGATAGGGTTTCCAGTGCAGGCATATTCATCAAGGT
ACAATGGTCGGCTACGCCTGAACCTCAAGAGCGCCTATCTTTGTCTGAAA
TATTTCATGGGGTGGGGTGGGGTAGAAACCGGGGTAGGTATCTTGGAATC
AAATGTGGAGTCTACTGTAAGCCCTTAAGGCTTTTGGACAAACGAACAAT
CTGAGGTAATTTTAAGTGCCCATCCATTTTCTACTGGAGTTTCTTCACCG
TGTCAAATTAGTATTTCATTCCGTCCAGTGGGAAAATAGAGGCGTACAAT
AATTGGTCCATGGGGTTGGGAAAAAAATCATTAATAGATTTAAGAAGACA
AAAAAGATCTTCGTCGAACCTTCTGCGAATACTTATGTACAAATTTTTCA
ATATCTTTACTTGAACGACCGTACACAAGAAAAAAGTTATCTTGAAAAAA
CACAAAAAAATGAACATCAACATGATTTTACCGGGATTTGGTATTGTTAC
TTGTAGTCACATTTTAGCAACTTTTTCACGTAAGCCTGTTTTTGGCTATT
TAGGTATGGTTTATGCTATTCTTTCTATTGGTGTTCTTGGATTTCTTGTT
TGGGCTCACCATATGTTTACAGTAGGTTTGGACGACCTGAAAAAGCTTCA
CCCGTTACCCGAGCGACCTTGAGGACTGCTGGCTCAGTGCCGATGGACTC
TCGGTGGTAAACGCCATCGGTACGCAAATGCGTGGCCTAATGAAATCGGG
ATTGGCCCGATTGCGGTTGTCGGTAGAGATCGATGCCGTCGCTGAAAACG
GATTGCGTGGCCTAATGAAATCGGGATTGGCCCGATGGCGGTTGACGGTA
GAGATGGATGCCGTCGCGGAAAACGGGAGGATCGAGATGATCCCGGGAGT
AAGCACCAGATTCAGCCTTGGTTGGGAGAATGAGCAGGCTGATACGGGAG
GGGACAGCTGAACCCGTCTCGCGAGACTAAATTCACAGGCGCGAACGGGG
ACAAGGGGGAATTATTTTCCCTGTTCAGCTGACCCCGAGCTGAAGGCAAT
CAAATCCGGCTGATCTTCTGCTAAATGTGTGACCAACAACAACAACATAC
TCCGTAATTACTCTAAAAATATCTTTGTGAGAATAATCCCTAAACACCCC
TCTCTGTGGTGACGTCTTGTTTGCAGTGATCGAACAAGCAAGGGTGGCGT
TGCCTCTACGTTCGCCTCCGCTGCCTGACCACACGGCCCTGACTGGCTGG
GTGTGGGAAGAGATGAGTGCCATGGAGGAAAGCTTGGCGGTTGTTGGCAC
CGCTTCTGCTGCTGCTGATATCGTGGCAACTGCTGCTGCCGCCGCTGCTG
TCATTGCGACCGCGTGGGAGCGCGACCAGGTTAGAAGAAACGTCTCCGTA
TGTTTTTTTCTATCGAATGCGAACGTGTAGCTTGTGCCAAGAGCAAGATA
ATCCAGCGCGCTCCATGACCAAAAGTCCCTCCAGCAGTCGGGGAGACTTT
GCCTTATCTCCCTCCATCGCATTTGTTGCGGAGAGTGGAAAGACCCACCG
CGTGTCTGTTCCCTGTCTAATTACCATCGGATCTGTAGCCTATTTTGTTA
TATTATCGATCCTTTTGGGGGGGTGGGTGAAGAATAAACATGTAAATGAC
ACGTGTAGTTTGTCAGTCCGATACCTTGCCTGTGACAATTGCTCGCTGCC
TCAGCATCGCTCGCGGTTTATTTCCACCCAAGCCAGCCGAAGAAGTATCA
TATTTCCCTCAGCCAAAACATGCCCACGATCTACCACCCGCACACCTCTT
CATGTCCGTTTTCCAACCGCCTTAATTAGCCCGCTCAAGACCGCGTTGAG
GGTGACGAGGGCGAAGAACAATCCTTTCCATCAGACGCCGCACCGGAAGA
GGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53709:1739..3892+

>mRNA_H-elongata_contig53709.12728.1 ID=mRNA_H-elongata_contig53709.12728.1|Name=mRNA_H-elongata_contig53709.12728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig53709:1739..3892+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGCGGTGCGCTCACCTGTCTAGAGATGAAGGCGCGGTGCGCTC
ACCTGTCTAGAGTGATCGAACAAGCAAGGGTGGCGTTGCCTCTACGTTCG
CCTCCGCTGCCTGACCACACGGCCCTGACTGGCTGGGTGTGGGAAGAGAT
GAGTGCCATGGAGGAAAGCTTGGCGGTTGTTGGCACCGCTTCTGCTGCTG
CTGATATCGTGGCAACTGCTGCTGCCGCCGCTGCTGTCATTGCGACCGCG
TGGGAGCGCGACCAGTGATCGAACAAGCAAGGGTGGCGTTGCCTCTACGT
TCGCCTCCGCTGCCTGACCACACGGCCCTGACTGGCTGGGTGTGGGAAGA
GATGAGTGCCATGGAGGAAAGCTTGGCGGTTGTTGGCACCGCTTCTGCTG
CTGCTGATATCGTGGCAACTGCTGCTGCCGCCGCTGCTGTCATTGCGACC
GCGTGGGAGCGCGACCAGCCCGCTCAAGACCGCGTTGAGGGTGACGAGGG
CGAAGAACAATCCTTTCCATCAGACGCCGCACCGGAAGAGGTGCCCGCTC
AAGACCGCGTTGAGGGTGACGAGGGCGAAGAACAATCCTTTCCATCAGAC
GCCGCACCGGAAGAGGTG
back to top