prot_H-elongata_contig116110.1272.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116110.1272.1
Unique Nameprot_H-elongata_contig116110.1272.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.610e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0
Query:    5 TSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 52
            TSLLQVMVCDPYANYVVQKIIDVADQ+QRQTIIMEI+ HAAQLKR  F
Sbjct:  480 TSLLQVMVCDPYANYVVQKIIDVADQEQRQTIIMEIKAHAAQLKRYTF 527          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.670e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0
Query:    5 TSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 52
            TSLLQVMVCDPYANYVVQKIIDVADQ+QRQTIIMEI+ HAAQLKR  F
Sbjct:  775 TSLLQVMVCDPYANYVVQKIIDVADQEQRQTIIMEIKAHAAQLKRYTF 822          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A835YYE4_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.960e-15
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 0
Query:    4 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 52
            + SLLQVMVCDPYANYVVQKIIDVAD +QR+ II EIR HAAQLKR  F
Sbjct:  269 QASLLQVMVCDPYANYVVQKIIDVADAEQREGIITEIRAHAAQLKRYTF 317          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A7S3YJ16_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ16_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 1.360e-9
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0
Query:    4 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 52
            R   L  +VCDPYANYVVQK +DVAD DQR+ I  E++ HA  LK   F
Sbjct:   59 RHPALPTLVCDPYANYVVQKALDVADDDQRRAIAHELKAHAGSLKNYTF 107          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: W7T8B7_9STRA (Pumilio RNA-binding repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8B7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.880e-7
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    4 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 49
            ++SLLQVMV DPY NYVVQKI+D+AD  Q++ +   +R+ A QL+R
Sbjct:  147 KSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCTYLRSCAPQLRR 192          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A4D9CQB4_9STRA (PUM-HD domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQB4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.880e-7
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    4 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 49
            ++SLLQVMV DPY NYVVQKI+D+AD  Q++ +   +R+ A QL+R
Sbjct:  769 KSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCTYLRSCAPQLRR 814          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: W4G882_9STRA (PUM-HD domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G882_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.120e-7
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    8 LQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 49
            LQVM+ D YANYVVQK+IDVAD ++R  +   I+THAA LKR
Sbjct:  753 LQVMMKDQYANYVVQKLIDVADANERDKMAAIIKTHAAHLKR 794          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A067D2Q5_SAPPC (PUM-HD domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2Q5_SAPPC)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    8 LQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 52
            LQVM+ D YANYVVQK+IDVAD ++R+ +++ I+T A+ LKR  F
Sbjct:  711 LQVMMKDQYANYVVQKLIDVADAEERERMVVIIKTQASHLKRFNF 755          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A1V9YTD6_9STRA (PUM-HD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTD6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    8 LQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 52
            LQVM+ D YANYVVQK+IDVAD ++R+ +++ I+T A+ LKR  F
Sbjct:  735 LQVMMKDQYANYVVQKLIDVADAEEREQMVVIIKTQASHLKRFNF 779          
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A834NHL6_VESVU (PUM-HD domain-containing protein n=1 Tax=Vespula vulgaris TaxID=7454 RepID=A0A834NHL6_VESVU)

HSP 1 Score: 50.4 bits (119), Expect = 1.520e-6
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    3 LRTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 49
            L+TS L VM+ D YANYVVQK+IDVA+  QR+ ++ +IR H   L++
Sbjct:    8 LQTSALNVMMKDQYANYVVQKMIDVAEPAQRKVLMHKIRPHLGSLRK 54          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI3.610e-1889.58PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KS31_9PHAE3.670e-1889.58PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YYE4_9STRA2.960e-1579.59Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A7S3YJ16_HETAK1.360e-957.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T8B7_9STRA2.880e-756.52Pumilio RNA-binding repeat containing protein n=1 ... [more]
A0A4D9CQB4_9STRA4.880e-756.52PUM-HD domain-containing protein n=1 Tax=Nannochlo... [more]
W4G882_9STRA9.120e-764.29PUM-HD domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A067D2Q5_SAPPC1.250e-657.78PUM-HD domain-containing protein n=3 Tax=Saprolegn... [more]
A0A1V9YTD6_9STRA1.250e-657.78PUM-HD domain-containing protein n=1 Tax=Thraustot... [more]
A0A834NHL6_VESVU1.520e-653.19PUM-HD domain-containing protein n=1 Tax=Vespula v... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 3..38
e-value: 3.3E-6
score: 36.6
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 8..37
e-value: 3.3E-9
score: 35.9
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 2..38
score: 9.924
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..51
e-value: 1.4E-11
score: 45.9
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 7..49
NoneNo IPR availablePANTHERPTHR12537:SF12MATERNAL PROTEIN PUMILIOcoord: 7..49
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..52
score: 9.081
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 6..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116110contigH-elongata_contig116110:107..262 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116110.1272.1mRNA_H-elongata_contig116110.1272.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116110 107..262 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116110.1272.1 ID=prot_H-elongata_contig116110.1272.1|Name=mRNA_H-elongata_contig116110.1272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MHLRTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRC
CF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold