mRNA_H-elongata_contig53696.12725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53696.12725.1
Unique NamemRNA_H-elongata_contig53696.12725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53696.12725.1 vs. uniprot
Match: A0A6H5JVW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW6_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 6.120e-48
Identity = 135/341 (39.59%), Postives = 179/341 (52.49%), Query Frame = 3 
Query:   30 PWVELSVGNKLHSASLPIESGKGKCHTPE----LTKKGSMTFRKVTERDVLTVTVLDRAT---SASKDGRDG--YITEVEPLRCTHWGVGVRPMHRTCAVAAPEAAMGFAAG------------------------------ISTVQLSVSWAPEMRLRKPLSLVAVAGGYTRALLSSKLDRSLATTADLTLDLMAHIS--VVLESPRKKRWARAAIVASVAGLSLGLPLGLTWLLAVSLFLVPLMMVL----AVTAFLLTPVVLTVVWLLACTTPACERLWRPLIVWAGTRSSLVRKLFLLPV-------GNAVFDREETMLKRGVENEA--DDAGQGWV 890
            P VELSVGNKLHS  LP+ES  G     E      +  ++ F  VTERDVL VTVLDR++   SA+ DGR    Y+ E +PLRCTHWG G RP  RTC VA PE A   A+G                               STVQL++ W+P +RL++PLSLVA AG  T  ++S K+DR  A   +L L      S   +   PR K    AA+VA    +SLG  +    ++A +   +P+M+ L    A T   L P  L + W+ ACT PACE+LWRPL+VW GTR  L R+L LLP+       G      +  +L +G+E  A  ++  + W+
Sbjct:   27 PCVELSVGNKLHSTRLPVESRGGTVGEGEGASRKRRSSAVAFHGVTERDVLMVTVLDRSSPPSSAAPDGRTRPLYVAEAKPLRCTHWGSGGRPTRRTCVVAPPEEAQELASGGSAVDRDGGDPRGRGGATSGVGSEVLRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTARVVSRKIDRPAAAVLNLGLGGAEKASDFFLFGDPRLKA---AALVAFAVSMSLGSAV----VVAAAACFLPVMLALSAAAAATFATLGPPALALTWVFACTGPACEQLWRPLLVWTGTRWGLFRRLLLLPLEIEAESLGEGGDGGDRGVLLKGLETSAMGEETARRWL 360
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BLAST of mRNA_H-elongata_contig53696.12725.1 vs. uniprot
Match: D7FN99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN99_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.060e-29
Identity = 105/282 (37.23%), Postives = 138/282 (48.94%), Query Frame = 3 
Query:   30 PWVELSVGNKLHSASLPIES-----GKGKCHTPELTKKGSMTFRKVTERDVLTVTVLDRATSASKDGRDGYITEVEPLRCTHWGVGVRPMHRTCAVAAPEAAMGFAAGIS------------------------------TVQLSVSWAPEMRLRKPLSLVAVAGGYTRALLSSKLDRSLATTADLTLDLMAHISVVL--ESPRKKRWARAAIVASVAGLSLGLPLGLTWLLAVSLFLVPLMMVL----AVTAFLLTPVVLTVVWLLACTTPACERLWRPLI 752
            P VELSVGNKLHS  LP+ES     G+G+  + +  +  ++ F  VTER                     Y+ E +PLRCTHWG G RP  RTC VA  E     A+G S                              TVQL++ W+P +RL++PLSLVA AG  T  ++S K+DR  A   +L L      S  L    PR K    AA+VAS   LSLG  +    ++A +   +P+M+ L    A T   L P  L + W+ ACT PACE+LWRPL+
Sbjct:   24 PCVELSVGNKLHSTRLPVESRGVTVGEGEGASRKR-RSSAVAFHGVTERPP-------------------YVAEAKPLRCTHWGSGGRPTRRTCVVAPLEEVQELASGASAVGRNGVDPRGRGGANSGGWSEVVRRGGESTVQLAICWSPAIRLKRPLSLVARAGRLTAHVVSRKIDRPAAAVLNLGLGGAEKASDFLFFGDPRLKA---AALVASAVSLSLGSAV----VVAAAACFLPVMLALSAAAAATFATLAPPALALTWVFACTGPACEQLWRPLL 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53696.12725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVW6_9PHAE6.120e-4839.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN99_ECTSI1.060e-2937.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53696contigH-elongata_contig53696:842..3305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1459
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53696.12725.1prot_H-elongata_contig53696.12725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53696 1402..2784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.3960903-UTR-H-elongata_contig53696:841..9211622930875.3960903-UTR-H-elongata_contig53696:841..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53696 842..921 +
1691679607.2226212-UTR-H-elongata_contig53696:841..9211691679607.2226212-UTR-H-elongata_contig53696:841..921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53696 842..921 +
1622930875.413554-UTR-H-elongata_contig53696:1347..14011622930875.413554-UTR-H-elongata_contig53696:1347..1401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53696 1348..1401 +
1691679607.230406-UTR-H-elongata_contig53696:1347..14011691679607.230406-UTR-H-elongata_contig53696:1347..1401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53696 1348..1401 +
1622930875.4721081-UTR-H-elongata_contig53696:2784..33051622930875.4721081-UTR-H-elongata_contig53696:2784..3305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53696 2785..3305 +
1691679607.2743387-UTR-H-elongata_contig53696:2784..33051691679607.2743387-UTR-H-elongata_contig53696:2784..3305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53696 2785..3305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930875.4296234-CDS-H-elongata_contig53696:1401..14271622930875.4296234-CDS-H-elongata_contig53696:1401..1427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53696 1402..1427 +
1691679607.2384162-CDS-H-elongata_contig53696:1401..14271691679607.2384162-CDS-H-elongata_contig53696:1401..1427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53696 1402..1427 +
1622930875.445415-CDS-H-elongata_contig53696:1741..20301622930875.445415-CDS-H-elongata_contig53696:1741..2030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53696 1742..2030 +
1691679607.2483735-CDS-H-elongata_contig53696:1741..20301691679607.2483735-CDS-H-elongata_contig53696:1741..2030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53696 1742..2030 +
1622930875.4602594-CDS-H-elongata_contig53696:2295..27841622930875.4602594-CDS-H-elongata_contig53696:2295..2784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53696 2296..2784 +
1691679607.2664192-CDS-H-elongata_contig53696:2295..27841691679607.2664192-CDS-H-elongata_contig53696:2295..2784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53696 2296..2784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53696.12725.1

>prot_H-elongata_contig53696.12725.1 ID=prot_H-elongata_contig53696.12725.1|Name=mRNA_H-elongata_contig53696.12725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MTFRKVTERDVLTVTVLDRATSASKDGRDGYITEVEPLRCTHWGVGVRPM
HRTCAVAAPEAAMGFAAGISTVQLSVSWAPEMRLRKPLSLVAVAGGYTRA
LLSSKLDRSLATTADLTLDLMAHISVVLESPRKKRWARAAIVASVAGLSL
GLPLGLTWLLAVSLFLVPLMMVLAVTAFLLTPVVLTVVWLLACTTPACER
LWRPLIVWAGTRSSLVRKLFLLPVGNAVFDREETMLKRGVENEADDAGQG
WVREILRHTCVWVYCIF*
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mRNA from alignment at H-elongata_contig53696:842..3305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53696.12725.1 ID=mRNA_H-elongata_contig53696.12725.1|Name=mRNA_H-elongata_contig53696.12725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2464bp|location=Sequence derived from alignment at H-elongata_contig53696:842..3305+ (Himanthalia elongata Himel1 dioecious)
AGAGGGCAGGCTCCTTGTCCTTGGCGGTCCCATGGGTGGAGCTCTCCGTG
GGCAACAAGCTACACAGCGCTAGCCTCCCGGTGAGCCCTTAGATGGATGG
ATGGATCGATGGATGGATAAACCTGCGGCCTCATGATGGGTGTGCCATGG
ATGAGACCTAGTTGTATTTCATGATATTATAATACTGCTGCCCTGGGCCA
TTATGCGGAAATCTCTGTGCCGCTTCCGCCTTGCGTGCCATTCACTCTTT
CACTATCGTGCCGGACTTGCTTGGACACTGCGATATAAGGCGATATAAGT
GTATATTTTGCTCTTACGCGTTGTTGTTGCTGGTCGCACATTTAGCAGAA
GATCAACGGAATTTGGTTGCCTTCTGTTCGTGGTCAGCTGAACAGGGAAA
ATAATTTTCCCCTGTCCCCGTTATGTGTATGTGTGTTTACATAAAACTGT
GCTGTGCATTCATTGGGTATCTTTGATACCCGTGCCTCGTGCGTGTGCTG
TGGTAGATTGAGTCAGGCAAGGGGAAATGCCATACCCCAGAGCTGACAAA
AAAAGGGTCCATGACGTTCCGCAAAGTTACCGAAAGGTGAGCGTTGTGCA
GTTCTAGTATTAGTATTAGTATCAGTATTGTCATAACTATTCCTATCATG
GTAATACTATTGCTATTACTATTACTATTACCATTACAAACTTTAATGCG
CTGTTCGGGTGACACAATGGTGGTCGGTTCGACGACGCTCTCTTTGAGGA
GGAACCTGTGGCCTTCCTAACTCTAACCCTAACCCTAACGCTTAACGAAA
CAATCGATTTTCGCACACGATTCATGCTTTCATGCTTTGTAAGATAATAC
CGGTACACTTTGACATGCGCTAAGGCAACTTTTGATTCAAATGCTCCCAG
GGATGTGCTGACGGTGACAGTGCTGGACCGAGCAACTTCGGCATCCAAAG
ATGGTCGAGATGGATACATCACCGAGGTTGAGCCGCTCCGGTGCACACAC
TGGGGAGTCGGGGTTCGACCCATGCACAGAACCTGTGCTGTCGCTGCACC
CGAAGCGGCCATGGGGTTTGCAGCAGGAATTTCCACCGTTCAGCTCTCCG
TCTCGTGGGCTCCTGAGATGAGGTTAAGAAAGCCTTTATCGTTGGTGGCT
GTCGCAGGAGGGTATACCAGGGCACTGCTTTCGAGCAAGGTGATAGTCTA
GCCACCCCGCCCCACAGGGCGTGGATTCCTTTGCTTTGGCGCTGAGCCCG
GTGGGACCCAGCAGGGTTAAGGTTAGGGTTTTGCTTGGTATGCACTCAAA
ATGCTCCACGTAGATGTGCAACACTCGCGTCGCCTCTCGCTCCGTACGCG
TCCACGTCAGTCAGTACTAAAGAGTACCATACAAGAAATCTCCGATCTCA
TGCATCTCTTGCGAACTTGGTGATCCCTCCCCCACTCATGTAACCCCTCC
GTAGCTGGACAGATCACTGGCGACGACAGCAGACCTCACCCTAGATCTGA
TGGCGCATATCAGTGTCGTTCTCGAGAGCCCGCGAAAGAAGCGGTGGGCG
AGAGCAGCTATTGTGGCCTCCGTGGCTGGACTGTCCCTAGGACTGCCGTT
AGGCTTGACCTGGCTGCTAGCCGTATCCTTGTTTTTGGTGCCTTTGATGA
TGGTCTTGGCGGTGACAGCCTTCCTTTTGACGCCAGTGGTGTTGACCGTC
GTCTGGCTGCTCGCTTGCACCACGCCAGCGTGCGAGCGACTGTGGAGGCC
GCTGATTGTCTGGGCGGGCACTCGGTCGAGTCTGGTCCGGAAGTTGTTTC
TCTTGCCCGTTGGTAACGCGGTTTTTGATAGAGAGGAGACGATGCTGAAG
CGGGGTGTTGAGAATGAGGCTGATGATGCAGGACAAGGTTGGGTGAGAGA
AATCTTGCGTCACACATGCGTATGGGTATATTGTATATTCTGATGTTAGC
CACTAAAGGAAAGACAGAGAAACAACGAGGTACCTCTACTGCATATTATA
TGAAGTACTATTGTAGTCTAGACGGACGTGTTATACAGTACTATCATGTA
GAGCTTGTACAGAAGTGTATTAATATTAATAGTAGTGGACGGTACCCCAA
CTATTAACGTGTTAGTGTATTAAATTATTAATATATTATTAATTAACGTA
TTATTAACATATTATTAACATATTTTGCTTATTGATTACCGATTCGTCGT
CCGGGCGTGTGGTCTTCTATTGCCTTTGTACAATAATTTAGTATTAATAA
TTTACTTATTTCGATTAATAAAATATAAAATTGAAGGTCCTCTTAGGGTT
AGGGTTAGGGTAGCCACCAGTGCACGAACCTGGCCGCACATCCTATGCAT
CGCGTGGTGCGCGCGTGTTCCCACTTGCTGATATGGCGGACTCTTGTCGG
CAGAGAACTGCAGCAAGATGGCCATAAAATGGCCGCAAGATGACCATAAG
ATGACCGTTTCCGA
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Coding sequence (CDS) from alignment at H-elongata_contig53696:842..3305+

>mRNA_H-elongata_contig53696.12725.1 ID=mRNA_H-elongata_contig53696.12725.1|Name=mRNA_H-elongata_contig53696.12725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig53696:842..3305+ (Himanthalia elongata Himel1 dioecious)
ATGACGTTCCGCAAAGTTACCGAAAGATGACGTTCCGCAAAGTTACCGAA
AGGGATGTGCTGACGGTGACAGTGCTGGACCGAGCAACTTCGGCATCCAA
AGATGGTCGAGATGGATACATCACCGAGGTTGAGCCGCTCCGGTGCACAC
ACTGGGGAGTCGGGGTTCGACCCATGCACAGAACCTGTGCTGTCGCTGCA
CCCGAAGCGGCCATGGGGTTTGCAGCAGGAATTTCCACCGTTCAGCTCTC
CGTCTCGTGGGCTCCTGAGATGAGGTTAAGAAAGCCTTTATCGTTGGTGG
CTGTCGCAGGAGGGTATACCAGGGCACTGCTTTCGAGCAAGGGATGTGCT
GACGGTGACAGTGCTGGACCGAGCAACTTCGGCATCCAAAGATGGTCGAG
ATGGATACATCACCGAGGTTGAGCCGCTCCGGTGCACACACTGGGGAGTC
GGGGTTCGACCCATGCACAGAACCTGTGCTGTCGCTGCACCCGAAGCGGC
CATGGGGTTTGCAGCAGGAATTTCCACCGTTCAGCTCTCCGTCTCGTGGG
CTCCTGAGATGAGGTTAAGAAAGCCTTTATCGTTGGTGGCTGTCGCAGGA
GGGTATACCAGGGCACTGCTTTCGAGCAAGCTGGACAGATCACTGGCGAC
GACAGCAGACCTCACCCTAGATCTGATGGCGCATATCAGTGTCGTTCTCG
AGAGCCCGCGAAAGAAGCGGTGGGCGAGAGCAGCTATTGTGGCCTCCGTG
GCTGGACTGTCCCTAGGACTGCCGTTAGGCTTGACCTGGCTGCTAGCCGT
ATCCTTGTTTTTGGTGCCTTTGATGATGGTCTTGGCGGTGACAGCCTTCC
TTTTGACGCCAGTGGTGTTGACCGTCGTCTGGCTGCTCGCTTGCACCACG
CCAGCGTGCGAGCGACTGTGGAGGCCGCTGATTGTCTGGGCGGGCACTCG
GTCGAGTCTGGTCCGGAAGTTGTTTCTCTTGCCCGTTGGTAACGCGGTTT
TTGATAGAGAGGAGACGATGCTGAAGCGGGGTGTTGAGAATGAGGCTGAT
GATGCAGGACAAGGTTGGGTGAGAGAAATCTTGCGTCACACATGCGTATG
GGTATATTGTATATTCTGACTGGACAGATCACTGGCGACGACAGCAGACC
TCACCCTAGATCTGATGGCGCATATCAGTGTCGTTCTCGAGAGCCCGCGA
AAGAAGCGGTGGGCGAGAGCAGCTATTGTGGCCTCCGTGGCTGGACTGTC
CCTAGGACTGCCGTTAGGCTTGACCTGGCTGCTAGCCGTATCCTTGTTTT
TGGTGCCTTTGATGATGGTCTTGGCGGTGACAGCCTTCCTTTTGACGCCA
GTGGTGTTGACCGTCGTCTGGCTGCTCGCTTGCACCACGCCAGCGTGCGA
GCGACTGTGGAGGCCGCTGATTGTCTGGGCGGGCACTCGGTCGAGTCTGG
TCCGGAAGTTGTTTCTCTTGCCCGTTGGTAACGCGGTTTTTGATAGAGAG
GAGACGATGCTGAAGCGGGGTGTTGAGAATGAGGCTGATGATGCAGGACA
AGGTTGGGTGAGAGAAATCTTGCGTCACACATGCGTATGGGTATATTGTA
TATTCTGA
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