prot_H-elongata_contig53693.12724.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig53693.12724.1
Unique Nameprot_H-elongata_contig53693.12724.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.120e-24
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSI+LRELIR+VRACKTAAEER VVAQECA IRTAFKEEDTEFRNRNVAKLLFIHMLG
Sbjct:    1 MSIRLRELIRAVRACKTAAEERGVVAQECARIRTAFKEEDTEFRNRNVAKLLFIHMLG 58          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A812MR36_SYMPI (Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MR36_SYMPI)

HSP 1 Score: 101 bits (251), Expect = 1.130e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLRELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A813L6Y0_POLGL (AP-1 complex subunit gamma n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L6Y0_POLGL)

HSP 1 Score: 101 bits (251), Expect = 1.360e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLRELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 58          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A1Q9EJ89_SYMMI (AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EJ89_SYMMI)

HSP 1 Score: 101 bits (251), Expect = 1.360e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLRELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct: 2401 MSIKLRELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 2458          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A482RW17_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW17_9ARCH)

HSP 1 Score: 97.1 bits (240), Expect = 2.000e-23
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLR+LIR+VRACKTAAEERAV+++ECALIRTA KEED +FR RNVAKLLFIHMLG
Sbjct:    1 MSIKLRDLIRAVRACKTAAEERAVISKECALIRTAIKEEDEQFRQRNVAKLLFIHMLG 58          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A662XRJ5_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRJ5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.780e-23
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MS KLR+LIRSVRACKTAAEERAV+A+E ALIRTAFK++D ++R+RNVAKLLFIHMLG
Sbjct:    1 MSQKLRDLIRSVRACKTAAEERAVIAKESALIRTAFKDQDKQYRHRNVAKLLFIHMLG 58          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A7S1F0P5_NOCSC (AP-1 complex subunit gamma n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F0P5_NOCSC)

HSP 1 Score: 99.0 bits (245), Expect = 8.780e-23
Identity = 48/58 (82.76%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLRELIRS+R+CKTAAEER+V+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:   20 MSIKLRELIRSIRSCKTAAEERSVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 77          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A2R5G3X0_9STRA (AP-1 complex subunit gamma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3X0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLR+LIR+VRACKTAAEERAV+A+ECALIRT+FK+ED  FR+RNVAKLLFIHMLG
Sbjct:    1 MSIKLRDLIRNVRACKTAAEERAVIAKECALIRTSFKDEDATFRHRNVAKLLFIHMLG 58          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A7S2LMT4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LMT4_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 2.650e-22
Identity = 44/52 (84.62%), Postives = 51/52 (98.08%), Query Frame = 0
Query:    7 ELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            ELIRS+RACKTAAEERAV+A+ECALIRTAFKE+D +FR+RNVAKLLFIHM+G
Sbjct:    1 ELIRSIRACKTAAEERAVIARECALIRTAFKEDDNQFRHRNVAKLLFIHMMG 52          
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Match: A0A0G4ELK5_VITBC (AP-1 complex subunit gamma n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELK5_VITBC)

HSP 1 Score: 97.4 bits (241), Expect = 3.050e-22
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAKLLFIHMLG 58
            MSIKLRELIR++RACKTAAEERAV+A+ECA IRTAFKEED  +R+RNVAKLLFIHMLG
Sbjct:    1 MSIKLRELIRNIRACKTAAEERAVIAKECAEIRTAFKEEDNHYRHRNVAKLLFIHMLG 58          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53693.12724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI1.120e-2493.10AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A812MR36_SYMPI1.130e-2386.21Ap1g1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813L6Y0_POLGL1.360e-2386.21AP-1 complex subunit gamma n=2 Tax=Polarella glaci... [more]
A0A1Q9EJ89_SYMMI1.360e-2386.21AP-1 complex subunit gamma-1 n=2 Tax=Symbiodinium ... [more]
A0A482RW17_9ARCH2.000e-2384.48Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A662XRJ5_9STRA8.780e-2381.03Adaptin_N domain-containing protein n=1 Tax=Nothop... [more]
A0A7S1F0P5_NOCSC8.780e-2382.76AP-1 complex subunit gamma n=1 Tax=Noctiluca scint... [more]
A0A2R5G3X0_9STRA2.240e-2284.48AP-1 complex subunit gamma n=1 Tax=Hondaea ferment... [more]
A0A7S2LMT4_9DINO2.650e-2284.62Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A0G4ELK5_VITBC3.050e-2284.48AP-1 complex subunit gamma n=2 Tax=Vitrella brassi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..58
e-value: 7.4E-20
score: 72.8
NoneNo IPR availablePANTHERPTHR22780ADAPTIN, ALPHA/GAMMA/EPSILONcoord: 2..58
NoneNo IPR availablePANTHERPTHR22780:SF5ADAPTOR PROTEIN COMPLEX 1, GAMMA SUBUNIT, ISOFORM Dcoord: 2..58
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53693contigH-elongata_contig53693:917..1090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53693.12724.1mRNA_H-elongata_contig53693.12724.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig53693 917..1093 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig53693.12724.1 ID=prot_H-elongata_contig53693.12724.1|Name=mRNA_H-elongata_contig53693.12724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MSIKLRELIRSVRACKTAAEERAVVAQECALIRTAFKEEDTEFRNRNVAK
LLFIHMLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold