mRNA_H-elongata_contig53669.12723.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: D7FGZ5_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGZ5_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.290e-82 Identity = 135/171 (78.95%), Postives = 141/171 (82.46%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK--------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSLEL+ANKDIKQ+IECTEDFNKYRSL KHLQ+H + GK DGYQARCIHGDKTQEERDYVLKDFK GNF VLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKG AVSFFGSKNSRN REL+KIL ES N VPP+L
Sbjct: 331 QVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHLQQHGHNGKVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGRELIKILTESENHVPPEL 501
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: D8LL45_ECTSI (Ethylene-responsive DEAD box RNA helicase, putative (RH30) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL45_ECTSI) HSP 1 Score: 236 bits (603), Expect = 9.820e-78 Identity = 123/159 (77.36%), Postives = 135/159 (84.91%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAG------KDGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRN--CRELMKILHESGNMVPPDL 453
QV VGSLEL+ANKDIKQ+IECTE+FNKYRSL KHLQ+H G +D YQARCI GDKT+E RDYVLKDFK GNF VLVATDVAARGLD+K+IQMVINFDFPNNMED++HRI RCGRAGAKG AV+FFGSKNSRN C EL+KIL ESGN VPP L
Sbjct: 6 QVKVGSLELAANKDIKQIIECTEEFNKYRSLCKHLQQHGRNGNLLVFVEDSYQARCIQGDKTREGRDYVLKDFKSGNFQVLVATDVAARGLDMKEIQMVINFDFPNNMEDFMHRIKRCGRAGAKGVAVNFFGSKNSRNNGC-ELIKILTESGNNVPPVL 163
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A6H5KBB2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBB2_9PHAE) HSP 1 Score: 205 bits (522), Expect = 3.590e-62 Identity = 106/171 (61.99%), Postives = 124/171 (72.51%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK--------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSLELSANKDI+QVIE EDF KYR L+KHLQEH+NAG+ +G+ A IHGDK Q ERD VL DFK G ++LVATDVAARGLDVKDI+MVINFDFP ME Y+HRIGRCGRAG KG A+SFF +KNS+ REL++IL ++ VP +L
Sbjct: 228 QVTVGSLELSANKDIQQVIEIVEDFGKYRVLVKHLQEHNNAGRVLIFVETKKGCDALTRSLRHEGWPALSIHGDKNQSERDRVLHDFKEGRSLILVATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAAKNSKCARELIRILKQANQKVPSEL 398
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A7S2XX29_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX29_9STRA) HSP 1 Score: 202 bits (513), Expect = 6.160e-60 Identity = 102/171 (59.65%), Postives = 125/171 (73.10%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK--------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSLELSANKD+ Q+IEC EDF KYR L +HL+E K DGY ARCIHGDK Q+ERD+VL++F+ +LVATDVAARGLDVK+I V+NFDFP NMEDY+HRIGRCGRAGAKG A+SFF SKN++ REL++IL+++G+ VP +L
Sbjct: 315 QVTVGSLELSANKDVTQIIECLEDFGKYRKLQEHLREGGGHLKTLIFVETKKGCDALTRSLRMDGYHARCIHGDKNQDERDWVLREFREDKIELLVATDVAARGLDVKNIVRVVNFDFPGNMEDYVHRIGRCGRAGAKGTAISFFASKNAKMARELIEILNKNGSHVPQEL 485
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A835ZEN1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN1_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.590e-59 Identity = 102/171 (59.65%), Postives = 127/171 (74.27%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK--------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSL+LSANKDI+Q +E ED++KY L+++L+EH++ G+ DG+ A IHGDKTQ+ERDY LK+F+ G +LVATDVA+RG+DVKDI+MVINFDFPNN+EDYIHRIGR RAGAKG +V+FF SKN+R R+L KIL ESGN VPP L
Sbjct: 266 QVTVGSLDLSANKDIRQYVEVLEDWDKYSKLLQYLREHNDGGRVLIFVETKKGADQLVRSLRADGWPANAIHGDKTQDERDYALKEFREGRKNMLVATDVASRGIDVKDIRMVINFDFPNNLEDYIHRIGRTARAGAKGTSVAFFTSKNARCARDLAKILSESGNDVPPAL 436
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A6S9KNI1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KNI1_HETAK) HSP 1 Score: 194 bits (494), Expect = 3.920e-57 Identity = 98/170 (57.65%), Postives = 122/170 (71.76%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK-------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSLEL AN DI+QVIE ED+ KY L + + DG+ ARCIHGDKTQ+ERD+VLK+F+ + +LVATDVAARGLD++DI+MV+NFDFP+NMEDY+HRIGRCGRAGAKG AVSFFGSKN++ REL++I+ E+G+ VP L
Sbjct: 310 QVTVGSLELQANADIEQVIEICEDYGKYAKLQETFRSRGGPKALVFVETKRGCDALTRSLRLDGFHARCIHGDKTQQERDWVLKEFRENHCKILVATDVAARGLDIRDIEMVVNFDFPSNMEDYVHRIGRCGRAGAKGTAVSFFGSKNAKLTRELVRIMREAGSAVPSSL 479
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A4D9CVW6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVW6_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.490e-54 Identity = 99/171 (57.89%), Postives = 118/171 (69.01%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK--------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSL+L+ANKDIKQ + ED +KY L++ L+E++ GK DG+ A IHGDK+Q++RD+ L+ FK G +LVATDVAARGLDVKDIQMV NFDFPNNMEDYIHR+GR GRAGAKG A+SF K+ R REL KIL ESGN VP L
Sbjct: 175 QVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHGRISRELSKILEESGNQVPAAL 345
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: W7U315_9STRA (Dead-box atp-dependent rna helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U315_9STRA) HSP 1 Score: 184 bits (468), Expect = 2.020e-53 Identity = 99/171 (57.89%), Postives = 119/171 (69.59%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGK--------------------DGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSL+L+ANKDIKQ + ED +KY L++ L+E++ GK DG+ A IHGDK+Q++RD+ L+ FK G +LVATDVAARGLDVKDIQMV NFDFPNNMEDYIHR+GR GRAGAKG A+SF K++R REL KIL ESGN VP L
Sbjct: 305 QVTVGSLDLAANKDIKQEVMVCEDRDKYGLLLRALKENNTGGKVLVFVETKRGCDQLQRSLQMDGFSAVAIHGDKSQQDRDWTLRQFKEGRSNILVATDVAARGLDVKDIQMVANFDFPNNMEDYIHRVGRTGRAGAKGYALSFVTQKHARISRELAKILEESGNQVPAAL 475
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A7S3NF06_9STRA (Hypothetical protein n=3 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NF06_9STRA) HSP 1 Score: 182 bits (462), Expect = 3.590e-52 Identity = 91/171 (53.22%), Postives = 118/171 (69.01%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHS--------------------NAGKDGYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSL+L+AN DI+Q+I ED KY+ ++ L + + KD + ARCIHGDK+Q ERD+VL DF+ G M+L+ATDVAARGLD+KDIQ V+NFDFP+N+EDY+HRIGRCGRAG KG A+SFF +K+ + R L+KIL ++ VPPDL
Sbjct: 339 QVTVGSLDLAANTDIEQIIHVVEDATKYKRMVDFLHDRPANDKMLVFVETKRGADQLTRSLQKDRFSARCIHGDKSQAERDWVLNDFRSGKCMLLIATDVAARGLDIKDIQTVVNFDFPSNLEDYVHRIGRCGRAGQKGTALSFFTAKSIKWSRRLIKILQDAKQQVPPDL 509
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Match: A0A7S2BHU1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHU1_9STRA) HSP 1 Score: 181 bits (459), Expect = 4.380e-52 Identity = 93/171 (54.39%), Postives = 119/171 (69.59%), Query Frame = 1
Query: 1 QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEH-----------SNAGKD---------GYQARCIHGDKTQEERDYVLKDFKMGNFMVLVATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGRAVSFFGSKNSRNCRELMKILHESGNMVPPDL 453
QVTVGSLEL+ANK I Q++E +D +KYR I ++EH + G D GY A IHGDKTQ+ERD L+DF+ G M+L+ATDVAARGLDVK++QMV+NFD PNN EDY+HRIGRCGRAGA G ++S+F KN+R R+L+K+L ++G VP DL
Sbjct: 296 QVTVGSLELAANKSITQMVEVVDDNDKYRRCIGFMREHFKGERVIVFVETKRGADQLTRSIRQEGYPANAIHGDKTQDERDRTLQDFRDGRIMILIATDVAARGLDVKNVQMVVNFDMPNNAEDYVHRIGRCGRAGATGTSMSYFTRKNARMGRDLVKLLRDAGQEVPRDL 466 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53669.12723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53669.12723.1 >prot_H-elongata_contig53669.12723.1 ID=prot_H-elongata_contig53669.12723.1|Name=mRNA_H-elongata_contig53669.12723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp QVTVGSLELSANKDIKQVIECTEDFNKYRSLIKHLQEHSNAGKDGYQARCback to top mRNA from alignment at H-elongata_contig53669:1400..1896+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53669.12723.1 ID=mRNA_H-elongata_contig53669.12723.1|Name=mRNA_H-elongata_contig53669.12723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig53669:1400..1896+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53669:1400..1896+ >mRNA_H-elongata_contig53669.12723.1 ID=mRNA_H-elongata_contig53669.12723.1|Name=mRNA_H-elongata_contig53669.12723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig53669:1400..1896+ (Himanthalia elongata Himel1 dioecious)back to top |