mRNA_H-elongata_contig5365.12721.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: D8LS71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS71_ECTSI) HSP 1 Score: 481 bits (1239), Expect = 7.190e-166 Identity = 238/312 (76.28%), Postives = 263/312 (84.29%), Query Frame = 2
Query: 104 IRRLTGPWGSIAIAGVVAYLAAICIFWETFRSYFAWSEAWAITVVDGLPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGV-VLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSPEAAFPLSWLGSWSVAHGGGPSTEAAAMVAVYVTANHLLDYFIPDY-EDPLCVAFKWCLKLLGVTSMVNPA 1033
+ + G + +AGV Y+A FW FR YF W+E+ AI+ DGLPRLSVLDLFGS+LTCQ+YR +A+FPKHAVETLVACSLMQFGGTFLVGV VLGQTPSW+ SFTAWPALA+ WWLTFFSPWD WHGRA +KA +F+AAFGRAVSASHAITSWGADKALTAHFEKA+MSA CTILCG LAGCGGGILADLLNL+GDSW LQRTP ALASPSFSVQRCFGASCLYY+LADPHGYLS EA FPLS LG SV HG GPSTEAAAMVAVYVTANHL+DYFIP Y +DPLC F L LLGV +MV+P+
Sbjct: 29 VSTMMGSLDPLVVAGVAVYVATAYAFWGIFREYFDWTESLAISFKDGLPRLSVLDLFGSILTCQAYRGMAKFPKHAVETLVACSLMQFGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDLWHGRAMSNKACMFLAAFGRAVSASHAITSWGADKALTAHFEKAKMSAICTILCGTLAGCGGGILADLLNLDGDSWNLQRTPQALASPSFSVQRCFGASCLYYLLADPHGYLSEEAPFPLSLLGRLSVDHGNGPSTEAAAMVAVYVTANHLMDYFIPRYNQDPLCKLFSVILGLLGVRAMVDPS 340
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A482SCI6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCI6_9ARCH) HSP 1 Score: 141 bits (355), Expect = 3.020e-34 Identity = 95/244 (38.93%), Postives = 131/244 (53.69%), Query Frame = 2
Query: 140 IAGVVAYLAAICIFWETFRSYFA-------WSEAWAITV--VDGLPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKAL--TAHFEKARMSAG---CTILCGILAGCGGGILADLLNL--EGDSWKLQRTPGALA----SPSFSVQRCFGASCLYYVLADPH 811
+ G V AA+ F+ F + A + E+ + V V LP +S+LD FGS C++YRR K E LVAC+LMQFGGT + G +LGQTPSWI S +A+PA+AL WWLTF+ P D + + ++FV AVS++HA++SWG DKAL H K +S CT L G + GGGIL D+L S+ RTP S ++ + + +YY L +PH
Sbjct: 24 VLGYVLLGAALLSFYFQFDDFRANVDYLNEYLESATVVVPFVPYLPPISILDFFGSACVCRTYRRNVEGRKSWFEVLVACTLMQFGGTTITGFLLGQTPSWIMSKSAFPAMALAWWLTFYCPGDVFWKAIKNNSILLFVLGMFGAVSSAHAVSSWGVDKALFNAFHVNKEGISKAYMVCT-LSGAFSASGGGILTDVLGFFRPNKSFVPFRTPSLFMIDFYEASATINKALLLAVVYYSLVNPH 266
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S0E304_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E304_9CRYP) HSP 1 Score: 130 bits (328), Expect = 1.930e-30 Identity = 84/216 (38.89%), Postives = 122/216 (56.48%), Query Frame = 2
Query: 185 ETFRSYFAWSEAWAITVVDGLPRLSVLDLFGSVLTCQSYRRVARFPKHA-VETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKAL-TAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDS--WKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYL 820
+ + F SE+WAI ++ S LDL ++ TC SYRR KH ++ ++C++ FGGT + + LGQ P W+ S ++ A L +WL F P + + +RH++V V + + S HA +SWGAD AL +AH S I CG++AGCGGGILA+ L + G S W TP L PS +V+ F ASC+YY+L +PH +L
Sbjct: 26 DGLQEIFLESESWAIPLLPF--HSSFLDLILALDTCASYRRHMGKNKHPWLQVFISCAVGTFGGTTVAALFLGQPPGWMGSLSSPFAFLLAFWLIFCCPGNVPYKIISRHRSVELVFGYINSFSCGHATSSWGADGALNSAHMVVG--SGPMAIFCGMIAGCGGGILANWLGMIGKSSDWMFG-TPPVLKGPSITVRTAFFASCIYYLLRNPHEFL 236
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: F0Y383_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y383_AURAN) HSP 1 Score: 125 bits (314), Expect = 9.230e-27 Identity = 112/289 (38.75%), Postives = 144/289 (49.83%), Query Frame = 2
Query: 20 ARVDGGAQQKDGAGENNDD-ERDETLSKGIR-RLTGPWGSIAIAGVVAYLAAI-CIFWETFRSYFAW-----SEAWAIT--VVDGLP---RLSVLDLFGSVLTCQSYRR--VARFPKHA-VETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSPEAAF 838
A++ GA Q G G DD E +S+ IR R T + A VVA AA+ C T R+ AW S ++ + V LP R S LD FGSV+ C YRR A H L +LMQFGGT LVG++LGQ PSW S A +L L +WLT+ P D W + A G A+S+ HAITSWG DKAL A +A+ + ++ G L GGG+LA LL+ G+ QR+ GA R S YY+L DPHG L+ E +
Sbjct: 786 AKLAAGATQT-GRGMRADDLEMRAAISETIRERFTSRDVVASPAAVVALGAALFCCAQRTARAA-AWYGALESHSFLLPPIVAKALPAWVRFSTLDFFGSVVCCADYRRRLEAAGQSHPWFAALATSTLMQFGGTTLVGLLLGQPPSWTLSHNAPRSLLLAFWLTWSCPGDLWTTAYRNSFVLRLFFATGAALSSGHAITSWGQDKALNAFHVQAQGAVFSALIAGALGASGGGLLAALLDPFGERPVGQRSYGAFL-------RAAVGSVAYYLLRDPHGVLADEYGY 1065
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A8J2SHU2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHU2_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.900e-26 Identity = 90/253 (35.57%), Postives = 127/253 (50.20%), Query Frame = 2
Query: 137 AIAGVVAYLAAICIFWETFRSYFAWSEAWAITVVDGLP-----------RLSVLDLFGSVLTCQSYRRVARFPKHAVET-----LVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGA--SCLYYVLADPHGYLSPEAAFP 841
A A ++A L A + + Y A + +A P R S +D FGS + C ++R AR ++ +T L C LMQFGGT LVG++LGQ SW TS TA +L L +WL+ P D ++ R +HK + + A G A+S HA+TSWGADKA++A K R S T++ G GGG+ L+L G+ R G S + + FGA S YY++ +PHG E P
Sbjct: 28 ASAIIIALLVATALMEDAPPGYDAMVDFYAACESHAFPIIGITDTITWLRFSTMDFFGSTVCCCAFR--ARLEQNKQKTPWFLALACCCLMQFGGTTLVGLLLGQPASWTTSPTACRSLLLAFWLSVSCPLDLFY-RMYQHKIIKSMIAIGAALSTGHAVTSWGADKAISAIHPKPRSSVFSTLMAGAFGASGGGLSVHALDLWGE-----RRRGKERSYAAFL---FGAVASVSYYLMRNPHGVFEYEPLAP 269
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S0W3X9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3X9_9CRYP) HSP 1 Score: 112 bits (279), Expect = 2.200e-23 Identity = 78/206 (37.86%), Postives = 100/206 (48.54%), Query Frame = 2
Query: 257 SVLDLFGSVLTCQSYRRV----------ARFPKHAVETLV------ACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSP 826
S+LD GS + C SYR A K++ V C QFGGT V+LGQ PSW A L WWLTF SP D W A + +AV +SA+HA+TSWG +KAL+A + R SA + CG L+GC G L G+ +L R PS+++QR F A YY L +PHG L+P
Sbjct: 120 SLLDFAGSAMVCFSYRTATERSIAEGDAAACRKNSSPLAVYAYGIFICLFSQFGGTTSTAVLLGQNPSWAAGNHVTNAFLLAWWLTFCSPGDVWF-EAMKLRAVRLPLQAVACISAAHAVTSWGLEKALSAEHTRMRGSAWGALACGYLSGCFGWPLVAFFETGGE--RLTRL-----GPSWAMQRTFYAVLAYYALTNPHGTLTP 317
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S2DJ93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJ93_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.320e-22 Identity = 48/109 (44.04%), Postives = 71/109 (65.14%), Query Frame = 2
Query: 167 AIC-IFWETFRSYFAWSEAWAITVVDG----LPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSP 478
A+C ++W+ + + W + ++ PRLSV DLFGS L C YR + K+ +ETLV C+L+QFGGT ++LGQ+PSW++S TA+P+L +CWWL+FF P
Sbjct: 19 AVCYLWWDPYVELYEWFGSASLPTCPESFWHCPRLSVADLFGSCLVCYGYRTSLKTTKYWLETLVVCTLLQFGGTTCTALILGQSPSWLSSATAFPSLLVCWWLSFFCP 127
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S4FA57_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA57_CHRCT) HSP 1 Score: 100 bits (250), Expect = 3.310e-20 Identity = 73/247 (29.55%), Postives = 108/247 (43.72%), Query Frame = 2
Query: 86 ETLSKGIRRLTGPWGSIAIAGVVAYLAAICIFWETFRSYFAWSEAWAITVVDGLPRLSVLDLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTAHFEKARMSAGCTILCGILAGCGGGILADLLNLEGDSWKLQRTPGALASPSFSVQRCFGASCLYYVLADPHGYLSP 826
+ +S R W + +V + + W+ T+ G+ VLDL + +R A P+ + +VA L GG+ ++ ++GQ W+ PA + W L SP D + +R AV V ++ AIT+WG +K + A R SA ILCG +AGCGGG+L D +L WKL +TP AL + SF+ L Y L DPH +SP
Sbjct: 1 DLMSSRARAAMATWAAXXATALVLSMLLSSVTWQQTLK----------TLTFGMGAWPVLDLIHGLAVAFDFRTSAS-PQGGPQRIVAICLTSLGGSMIMCFLVGQPCGWLCDNVTLPAYIVAWALLHHSPNDIVYRVFSRSPAVATVLRMLDDLTWGVAITTWGMEKTIGAAHLAPRGSAVAAILCGTIAGCGGGLLCDTASLMSTEWKL-KTPQALRTVSFAPTTALCCCVLAYALRDPHNVVSP 235
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A5A8CI99_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CI99_CAFRO) HSP 1 Score: 80.9 bits (198), Expect = 1.610e-12 Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 2
Query: 206 AWSEAWAITVVDGLPRLSVL----DLFGSVLTCQSYRRVARFPKHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSW----HGRATRHKAVVFVAAFGRAVSASHAITSWGADKALT---AHFEKARMSAGCTI--LCGILAGCGGGILADLLNLEGDSWKLQRTP 730
AW A+ V D + RL+ + DL GS YR R P ++L+ ++ FGGT + G++ G++PSW+TS+ + A+ + W+LTFF P+D W + VVF ++S ++ I + G K L HF + + +CGI++GCGGG+L++ N D R P
Sbjct: 24 AW-HAYTAAVSD-IARLAFIVQLTDLIGSARVAAWYRVNVRRPVSWHQSLLVVLIVHFGGTTMTGIMTGKSPSWVTSYESLLAVIVSWYLTFFCPFDLWWRVYNVPWVNRACVVF-----ESISLANGIGNLGVGKVLDHSRGHFAHPGTAPSPVLGWVCGIMSGCGGGVLSEFANFVDDPTPHSRRP 204
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Match: A0A7S0UDZ5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UDZ5_HEMAN) HSP 1 Score: 74.7 bits (182), Expect = 1.240e-11 Identity = 47/131 (35.88%), Postives = 60/131 (45.80%), Query Frame = 2
Query: 257 SVLDLFGSVLTCQSYRRVARFP----------------KHAVETLVACSLMQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRHKAVVFVAAFGRAVSASHAITSWGADKALTA 601
S+LD GS + C SYR + H V + C QFGGT + LGQ SW A L WWLTF P D W A +++A+ VSA+HA+TSWG +KAL+A
Sbjct: 92 SLLDFAGSAMVCFSYRTATQKAIADGDEALCRKHSSPLAHYVYGIFTCLFSQFGGTTSTAIFLGQNASWTAGNHVTNAFLLAWWLTFCCPMDLWF-TAMQYRAMRLPVQAVACVSAAHAVTSWGLEKALSA 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5365.12721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5365.12721.1 >prot_H-elongata_contig5365.12721.1 ID=prot_H-elongata_contig5365.12721.1|Name=mRNA_H-elongata_contig5365.12721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp MQFGGTFLVGVVLGQTPSWITSFTAWPALALCWWLTFFSPWDSWHGRATRback to top mRNA from alignment at H-elongata_contig5365:5767..10087- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5365.12721.1 ID=mRNA_H-elongata_contig5365.12721.1|Name=mRNA_H-elongata_contig5365.12721.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4321bp|location=Sequence derived from alignment at H-elongata_contig5365:5767..10087- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5365:5767..10087- >mRNA_H-elongata_contig5365.12721.1 ID=mRNA_H-elongata_contig5365.12721.1|Name=mRNA_H-elongata_contig5365.12721.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig5365:5767..10087- (Himanthalia elongata Himel1 dioecious)back to top |