mRNA_H-elongata_contig116110.1272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116110.1272.1
Unique NamemRNA_H-elongata_contig116110.1272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.610e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   13 TSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 156
            TSLLQVMVCDPYANYVVQKIIDVADQ+QRQTIIMEI+ HAAQLKR  F
Sbjct:  480 TSLLQVMVCDPYANYVVQKIIDVADQEQRQTIIMEIKAHAAQLKRYTF 527
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.670e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   13 TSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 156
            TSLLQVMVCDPYANYVVQKIIDVADQ+QRQTIIMEI+ HAAQLKR  F
Sbjct:  775 TSLLQVMVCDPYANYVVQKIIDVADQEQRQTIIMEIKAHAAQLKRYTF 822
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A835YYE4_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.960e-15
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   10 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 156
            + SLLQVMVCDPYANYVVQKIIDVAD +QR+ II EIR HAAQLKR  F
Sbjct:  269 QASLLQVMVCDPYANYVVQKIIDVADAEQREGIITEIRAHAAQLKRYTF 317
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A7S3YJ16_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ16_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 1.360e-9
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   10 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 156
            R   L  +VCDPYANYVVQK +DVAD DQR+ I  E++ HA  LK   F
Sbjct:   59 RHPALPTLVCDPYANYVVQKALDVADDDQRRAIAHELKAHAGSLKNYTF 107
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: W7T8B7_9STRA (Pumilio RNA-binding repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8B7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.880e-7
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 147
            ++SLLQVMV DPY NYVVQKI+D+AD  Q++ +   +R+ A QL+R
Sbjct:  147 KSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCTYLRSCAPQLRR 192
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A4D9CQB4_9STRA (PUM-HD domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQB4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.880e-7
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 RTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 147
            ++SLLQVMV DPY NYVVQKI+D+AD  Q++ +   +R+ A QL+R
Sbjct:  769 KSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCTYLRSCAPQLRR 814
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: W4G882_9STRA (PUM-HD domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G882_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.120e-7
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   22 LQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 147
            LQVM+ D YANYVVQK+IDVAD ++R  +   I+THAA LKR
Sbjct:  753 LQVMMKDQYANYVVQKLIDVADANERDKMAAIIKTHAAHLKR 794
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A067D2Q5_SAPPC (PUM-HD domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2Q5_SAPPC)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   22 LQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 156
            LQVM+ D YANYVVQK+IDVAD ++R+ +++ I+T A+ LKR  F
Sbjct:  711 LQVMMKDQYANYVVQKLIDVADAEERERMVVIIKTQASHLKRFNF 755
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A1V9YTD6_9STRA (PUM-HD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTD6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   22 LQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRCCF 156
            LQVM+ D YANYVVQK+IDVAD ++R+ +++ I+T A+ LKR  F
Sbjct:  735 LQVMMKDQYANYVVQKLIDVADAEEREQMVVIIKTQASHLKRFNF 779
[Close]
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Match: A0A834NHL6_VESVU (PUM-HD domain-containing protein n=1 Tax=Vespula vulgaris TaxID=7454 RepID=A0A834NHL6_VESVU)

HSP 1 Score: 50.4 bits (119), Expect = 1.520e-6
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    7 LRTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKR 147
            L+TS L VM+ D YANYVVQK+IDVA+  QR+ ++ +IR H   L++
Sbjct:    8 LQTSALNVMMKDQYANYVVQKMIDVAEPAQRKVLMHKIRPHLGSLRK 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116110.1272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI3.610e-1889.58PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KS31_9PHAE3.670e-1889.58PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YYE4_9STRA2.960e-1579.59Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A7S3YJ16_HETAK1.360e-957.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T8B7_9STRA2.880e-756.52Pumilio RNA-binding repeat containing protein n=1 ... [more]
A0A4D9CQB4_9STRA4.880e-756.52PUM-HD domain-containing protein n=1 Tax=Nannochlo... [more]
W4G882_9STRA9.120e-764.29PUM-HD domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A067D2Q5_SAPPC1.250e-657.78PUM-HD domain-containing protein n=3 Tax=Saprolegn... [more]
A0A1V9YTD6_9STRA1.250e-657.78PUM-HD domain-containing protein n=1 Tax=Thraustot... [more]
A0A834NHL6_VESVU1.520e-653.19PUM-HD domain-containing protein n=1 Tax=Vespula v... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116110contigH-elongata_contig116110:107..262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D7FWZ0
Preferred namePUF2
KEGG koko:K17943,ko:K17944
GOsGO:0000003,GO:0000288,GO:0000956,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006884,GO:0006950,GO:0006952,GO:0006970,GO:0007049,GO:0007097,GO:0007276,GO:0007281,GO:0007338,GO:0007346,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008152,GO:0008285,GO:0008306,GO:0008355,GO:0008361,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009566,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009651,GO:0009819,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009992,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019725,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030104,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035046,GO:0035770,GO:0036464,GO:0040019,GO:0042048,GO:0042127,GO:0042221,GO:0042592,GO:0043073,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045495,GO:0045786,GO:0045787,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051445,GO:0051446,GO:0051607,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051728,GO:0051729,GO:0055082,GO:0060184,GO:0060255,GO:0060293,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000243
EggNOG free text desc.mRNA binding
EggNOG OGsCOG5099@1,KOG1488@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.7510803-CDS-H-elongata_contig116110:106..2621622929674.7510803-CDS-H-elongata_contig116110:106..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116110 107..262 -
1691679114.9301527-CDS-H-elongata_contig116110:106..2621691679114.9301527-CDS-H-elongata_contig116110:106..262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116110 107..262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116110.1272.1prot_H-elongata_contig116110.1272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116110 107..262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116110.1272.1

>prot_H-elongata_contig116110.1272.1 ID=prot_H-elongata_contig116110.1272.1|Name=mRNA_H-elongata_contig116110.1272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MHLRTSLLQVMVCDPYANYVVQKIIDVADQDQRQTIIMEIRTHAAQLKRC
CF
back to top

mRNA from alignment at H-elongata_contig116110:107..262-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116110.1272.1 ID=mRNA_H-elongata_contig116110.1272.1|Name=mRNA_H-elongata_contig116110.1272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig116110:107..262- (Himanthalia elongata Himel1 dioecious)
ATGCATCTCAGGACGTCCCTGTTGCAAGTGATGGTATGTGACCCCTACGC
GAACTACGTCGTGCAGAAGATCATCGACGTTGCTGACCAGGACCAGCGAC
AGACCATTATTATGGAGATTCGTACACACGCGGCGCAACTCAAGAGGTGC
TGCTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig116110:107..262-

>mRNA_H-elongata_contig116110.1272.1 ID=mRNA_H-elongata_contig116110.1272.1|Name=mRNA_H-elongata_contig116110.1272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig116110:107..262- (Himanthalia elongata Himel1 dioecious)
ATGCATCTCAGGACGTCCCTGTTGCAAGTGATGGTATGTGACCCCTACGC
GAACTACGTCGTGCAGAAGATCATCGACGTTGCTGACCAGGACCAGCGAC
AGACCATTATTATGGAGATTCGTACACACGCGGCGCAACTCAAGAGGTGC
TGCTTCATGCATCTCAGGACGTCCCTGTTGCAAGTGATGGTATGTGACCC
CTACGCGAACTACGTCGTGCAGAAGATCATCGACGTTGCTGACCAGGACC
AGCGACAGACCATTATTATGGAGATTCGTACACACGCGGCGCAACTCAAG
AGGTGCTGCTTC
back to top