mRNA_H-elongata_contig536.12714.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig536.12714.1
Unique NamemRNA_H-elongata_contig536.12714.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig536.12714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig536contigH-elongata_contig536:4535..4941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002810.1
Exons1
Model size409
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.9607651-CDS-H-elongata_contig536:4534..49391622930873.9607651-CDS-H-elongata_contig536:4534..4939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig536 4535..4939 +
1691679606.6661649-CDS-H-elongata_contig536:4534..49391691679606.6661649-CDS-H-elongata_contig536:4534..4939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig536 4535..4939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig536.12714.1prot_H-elongata_contig536.12714.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig536 4535..4939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig536.12714.1

>prot_H-elongata_contig536.12714.1 ID=prot_H-elongata_contig536.12714.1|Name=mRNA_H-elongata_contig536.12714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
SLVRRAQQDGGGTPPAHGGGNAAPSASVDGALDAEFSYLPNCTPSFQVTW
RSSSGGGSDYSLVLQPDGPVACGLDDRLPNRRALGRGRHFWRHMKSPDFG
NPLLRLALPTSDLPEFLRAANEDENEFKATVRVFG
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mRNA from alignment at H-elongata_contig536:4535..4941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig536.12714.1 ID=mRNA_H-elongata_contig536.12714.1|Name=mRNA_H-elongata_contig536.12714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=407bp|location=Sequence derived from alignment at H-elongata_contig536:4535..4941+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGTGCGACGTGCGCAACAAGATGGTGGTGGTACTCCGCCCGCCCA
CGGCGGAGGCAACGCTGCACCCTCTGCTTCGGTGGATGGTGCCTTGGATG
CCGAGTTCAGTTATTTGCCGAACTGTACCCCGTCTTTTCAGGTCACTTGG
AGAAGCAGCAGCGGCGGTGGCAGCGATTACTCGCTAGTCCTCCAGCCTGA
CGGTCCAGTGGCTTGTGGCCTTGACGATAGACTGCCCAACAGACGGGCTC
TCGGACGAGGCCGACATTTTTGGCGTCACATGAAGAGCCCGGACTTCGGC
AACCCGCTGCTGAGGCTGGCGTTGCCAACGTCTGACTTACCCGAGTTCCT
GCGCGCGGCCAACGAGGACGAGAACGAGTTCAAAGCCACTGTTCGTGTTT
TCGGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig536:4535..4941+

>mRNA_H-elongata_contig536.12714.1 ID=mRNA_H-elongata_contig536.12714.1|Name=mRNA_H-elongata_contig536.12714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig536:4535..4941+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGTGCGACGTGCGCAACAAGATGGTGGTGGTACTCCGCCCGCCCA
CGGCGGAGGCAACGCTGCACCCTCTGCTTCGGTGGATGGTGCCTTGGATG
CCGAGTTCAGTTATTTGCCGAACTGTACCCCGTCTTTTCAGGTCACTTGG
AGAAGCAGCAGCGGCGGTGGCAGCGATTACTCGCTAGTCCTCCAGCCTGA
CGGTCCAGTGGCTTGTGGCCTTGACGATAGACTGCCCAACAGACGGGCTC
TCGGACGAGGCCGACATTTTTGGCGTCACATGAAGAGCCCGGACTTCGGC
AACCCGCTGCTGAGGCTGGCGTTGCCAACGTCTGACTTACCCGAGTTCCT
GCGCGCGGCCAACGAGGACGAGAACGAGTTCAAAGCCACTGTTCGTGTTT
TCGGTTCCCTCGTGCGACGTGCGCAACAAGATGGTGGTGGTACTCCGCCC
GCCCACGGCGGAGGCAACGCTGCACCCTCTGCTTCGGTGGATGGTGCCTT
GGATGCCGAGTTCAGTTATTTGCCGAACTGTACCCCGTCTTTTCAGGTCA
CTTGGAGAAGCAGCAGCGGCGGTGGCAGCGATTACTCGCTAGTCCTCCAG
CCTGACGGTCCAGTGGCTTGTGGCCTTGACGATAGACTGCCCAACAGACG
GGCTCTCGGACGAGGCCGACATTTTTGGCGTCACATGAAGAGCCCGGACT
TCGGCAACCCGCTGCTGAGGCTGGCGTTGCCAACGTCTGACTTACCCGAG
TTCCTGCGCGCGGCCAACGAGGACGAGAACGAGTTCAAAGCCACTGTTCG
TGTTTTCGGT
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