mRNA_H-elongata_contig116108.1271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116108.1271.1
Unique NamemRNA_H-elongata_contig116108.1271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A6H5KZU9_9PHAE (Protein O-GlcNAc transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZU9_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.430e-44
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEE--MIVDSLEAYEELAVTLATDPERLFQV 297
            QLHFTDVA KEEHIKRGYLADLFLDTPSCNAHTTGCDILW GTPMLTMAG KMATRVA SLLKAAGAE   +IV+SLE YEE AV+LATDPE+LF++
Sbjct:  850 QLHFTDVATKEEHIKRGYLADLFLDTPSCNAHTTGCDILWSGTPMLTMAGSKMATRVAPSLLKAAGAEGAGLIVESLEEYEERAVSLATDPEKLFEI 946          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: K3X4T5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4T5_GLOUD)

HSP 1 Score: 146 bits (369), Expect = 7.870e-40
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV 297
            +LHFTDVA K+EH+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TMA  +MA RVA SLLKAA   +MI  SLE YEELAV LA+D ++L++V
Sbjct:  327 RLHFTDVAPKDEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPMITMAKDRMACRVASSLLKAANLSDMITQSLEEYEELAVALASDMDKLWEV 421          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A2P4Y2W6_9STRA (UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2W6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.300e-38
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV 297
            +L FTDVA K+EH+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TM   +MATRVA SLL+AA   E+I +SLE YEELAV LA+D +RL+++
Sbjct:  218 RLIFTDVAPKDEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPMVTMPKDRMATRVASSLLRAANMSELITNSLEEYEELAVALASDMDRLWEL 312          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: F0WMK0_9STRA (Protein O-GlcNAc transferase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMK0_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.250e-38
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPER 285
            +L FTDVA KEEH+KRG+LADLFLDTP CNAHTTGCDILWGGTPM+T+A  +MATRVA SLL+AA  +EMI +SLE YEELAVTLATD +R
Sbjct:  806 RLQFTDVAKKEEHLKRGHLADLFLDTPECNAHTTGCDILWGGTPMITLAKDRMATRVASSLLRAANLDEMITNSLEEYEELAVTLATDTKR 896          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A5D6YC07_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC07_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.990e-38
Identity = 66/95 (69.47%), Postives = 83/95 (87.37%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV 297
            +LHFTDVA K+EH+KRGYLADLFLDTP CNAHTTGCDILWGGTP++TMA ++MA+RVA SLL+AA   E++  SLE YEELAV LA+D ++L+++
Sbjct:  316 RLHFTDVAPKDEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPLVTMAKERMASRVASSLLRAANLGELVTCSLEEYEELAVALASDMDKLWEL 410          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A3R7HUL3_9STRA (Protein O-GlcNAc transferase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A3R7HUL3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.060e-37
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV 297
            +L FTDVA K+EH+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TMA  +MATRVA SLL+AA   E+I +SLE YEELAV LA+D +RL+++
Sbjct:  741 RLIFTDVAPKDEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPMVTMARDRMATRVASSLLRAANMSELITNSLEEYEELAVALASDMDRLWEL 835          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A2D4BUC4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUC4_PYTIN)

HSP 1 Score: 142 bits (359), Expect = 2.000e-37
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV 297
            +LHFTDVA K+ H+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TM   +MA+RVA SLLKAA  +EMI  SLE YEELAV LA+D ++L+++
Sbjct:  815 RLHFTDVAPKDXHLKRGYLADLFLDTPXCNAHTTGCDILWGGTPMITMPKDRMASRVASSLLKAAMLDEMITSSLEEYEELAVALASDLDKLWEI 909          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A3M6VVX4_9STRA (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVX4_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.710e-37
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERL 288
            +L FTDVA K+EH+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TM   +MATRVA SLL+AA   E+IVDSL+ YEELAV LA+D +RL
Sbjct:  789 RLIFTDVAPKDEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPMVTMPKDRMATRVASSLLRAANMSELIVDSLKEYEELAVALASDTDRL 880          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: A0A484DUK5_BRELC (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUK5_BRELC)

HSP 1 Score: 142 bits (357), Expect = 3.690e-37
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPER 285
            +L FT+VA KEEH+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TMA  +MATRVA SLL+AA   E+I +SLE YEELAV LATD +R
Sbjct:  801 RLFFTNVAPKEEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPMVTMAKDRMATRVASSLLRAANMSELITNSLEEYEELAVALATDVDR 891          
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Match: M4BYK0_HYAAE (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYK0_HYAAE)

HSP 1 Score: 142 bits (357), Expect = 3.700e-37
Identity = 67/95 (70.53%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   13 QLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPMLTMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV 297
            +L FTDVA+K+EH+KRGYLADLFLDTP CNAHTTGCDILWGGTPM+TM   +MATRVA SLL+A    E+I++SLE YEELAV LA+D +RL+++
Sbjct:  804 RLVFTDVASKDEHLKRGYLADLFLDTPECNAHTTGCDILWGGTPMVTMPKDRMATRVASSLLRAVNMSELIINSLEEYEELAVALASDADRLWRL 898          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116108.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZU9_9PHAE1.430e-4484.54Protein O-GlcNAc transferase n=2 Tax=Ectocarpus Ta... [more]
K3X4T5_GLOUD7.870e-4073.68Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4Y2W6_9STRA1.300e-3871.58UDP-N-acetylglucosamine-peptide N-acetylglucosamin... [more]
F0WMK0_9STRA2.250e-3876.92Protein O-GlcNAc transferase n=1 Tax=Albugo laibac... [more]
A0A5D6YC07_9STRA2.990e-3869.47Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A3R7HUL3_9STRA1.060e-3772.63Protein O-GlcNAc transferase n=4 Tax=Phytophthora ... [more]
A0A2D4BUC4_PYTIN2.000e-3771.58Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3M6VVX4_9STRA2.710e-3775.00Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A484DUK5_BRELC3.690e-3775.82Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
M4BYK0_HYAAE3.700e-3770.53Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116108contigH-elongata_contig116108:275..1440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.6e-38
Seed eggNOG ortholog2880.D7FX68
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016740,GO:0016757,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.6841311-CDS-H-elongata_contig116108:274..4111622929674.6841311-CDS-H-elongata_contig116108:274..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116108 275..411 +
1691679114.9076462-CDS-H-elongata_contig116108:274..4111691679114.9076462-CDS-H-elongata_contig116108:274..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116108 275..411 +
1622929674.700946-CDS-H-elongata_contig116108:1280..14401622929674.700946-CDS-H-elongata_contig116108:1280..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116108 1281..1440 +
1691679114.921418-CDS-H-elongata_contig116108:1280..14401691679114.921418-CDS-H-elongata_contig116108:1280..1440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116108 1281..1440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116108.1271.1prot_H-elongata_contig116108.1271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116108 275..1440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116108.1271.1

>prot_H-elongata_contig116108.1271.1 ID=prot_H-elongata_contig116108.1271.1|Name=mRNA_H-elongata_contig116108.1271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MACCQLHFTDVAAKEEHIKRGYLADLFLDTPSCNAHTTGCDILWGGTPML
TMAGQKMATRVALSLLKAAGAEEMIVDSLEAYEELAVTLATDPERLFQV
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mRNA from alignment at H-elongata_contig116108:275..1440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116108.1271.1 ID=mRNA_H-elongata_contig116108.1271.1|Name=mRNA_H-elongata_contig116108.1271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-elongata_contig116108:275..1440+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTGTTGCCAGCTGCACTTCACGGACGTGGCGGCGAAGGAGGAGCA CATAAAGCGGGGTTATCTCGCCGACCTCTTCTTGGATACCCCCAGCTGCA ACGCCCACACTACGGGCTGCGACATCTTGTGGGGAGGGTAAGACTTACGA GTGCTTATTGTGCTCATTATGCGTGCATCCCCCTACTTCGTTCTCTTTTT GATTTTTGAGCGCACCATCAGCATCAGCAATGCTGAGCCACGGTGTCCCA GCTCGGTTTTGTTACAAAGAAATAGAAATGCTGAAATTAACATGTCTACC TATCGAAATATATTTATAATATATACATATATAATATATTTATAATATAT ACTTACATGCTATTTGGTGGTGGGGGGCAGCTAAGACTCTTTGTAAGAGA GTGGTTTTATTGCGTCGATGACGTCACTTTTTTTTTTTCTTCTAAAAATC TTGCCGAATTTTCTCCACGGACTAGACTAGTGGTGCATTTGTTCGAATAC AGTAATGGGATGATGACGGATAAGTGTCGAGTCGAACGCCCTTTTTTCCG CTTGTTGTGTGTTGTTTGTTTTTCGTTTTCGCTTTTCCATGTTGTTTTAT TTTTTATTTTTTCAATCTCTCTCGATATGTTTTGTTTTGTTTTTGTAATT TCTTGCGTCAAGTATAGAGACATAGTCATCCGTTTATTTTATTTTTGCTG CCATATTTTGCTCCGGGAATGACCGCGATAATATACAGTAGCGGGACTGC CAATAGGTGAGGACTAGAGACAGGCAGGCACTAAATACGCAAAGTTAATT CAATTTAAGTCCAATTCATAATTCATTTAAAATTAGAGTTCGAATTCACC AAAGTATAATTCATTTGAAGTTAGAGAGTCAATTTACATGTTTACCCTGG CGCCGCTATCAAAACTCATCAGAAGGGCCAGGGTTGCTCTACGTACCCTT CCTAACTGCCCCCCCCACCTCCCCTCCCACTACTCCCTCCCTATGGTTGC TTGTAGCACACCGATGCTGACGATGGCGGGGCAAAAGATGGCTACTAGGG TCGCGCTGTCGCTTCTGAAGGCGGCGGGGGCAGAAGAGATGATCGTGGAC AGCCTGGAGGCTTACGAAGAGCTCGCCGTTACGTTAGCGACCGACCCTGA GAGGCTATTCCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig116108:275..1440+

>mRNA_H-elongata_contig116108.1271.1 ID=mRNA_H-elongata_contig116108.1271.1|Name=mRNA_H-elongata_contig116108.1271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig116108:275..1440+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTGTTGCCAGCTGCACTTCACGGACGTGGCGGCGAAGGAGGAGCA
CATAAAGCGGGGTTATCTCGCCGACCTCTTCTTGGATACCCCCAGCTGCA
ACGCCCACACTACGGGCTGCGACATCTTGTGGGGAGGATGGCGTGTTGCC
AGCTGCACTTCACGGACGTGGCGGCGAAGGAGGAGCACATAAAGCGGGGT
TATCTCGCCGACCTCTTCTTGGATACCCCCAGCTGCAACGCCCACACTAC
GGGCTGCGACATCTTGTGGGGAGGCACACCGATGCTGACGATGGCGGGGC
AAAAGATGGCTACTAGGGTCGCGCTGTCGCTTCTGAAGGCGGCGGGGGCA
GAAGAGATGATCGTGGACAGCCTGGAGGCTTACGAAGAGCTCGCCGTTAC
GTTAGCGACCGACCCTGAGAGGCTATTCCAGGTGCACACCGATGCTGACG
ATGGCGGGGCAAAAGATGGCTACTAGGGTCGCGCTGTCGCTTCTGAAGGC
GGCGGGGGCAGAAGAGATGATCGTGGACAGCCTGGAGGCTTACGAAGAGC
TCGCCGTTACGTTAGCGACCGACCCTGAGAGGCTATTCCAGGTG
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