mRNA_H-elongata_contig5354.12709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5354.12709.1
Unique NamemRNA_H-elongata_contig5354.12709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5354.12709.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.120e-10
Identity = 47/124 (37.90%), Postives = 60/124 (48.39%), Query Frame = 3 
Query:  330 GIFWLTAGRDSKATDAALFLERVARDLDAASSRDAAANAVHNPHP--------RHHFRRFGNSAVEGNLRCLVVLDDAWDAKVVEAFARAGFHALVTARRRNVIPRSSGGLWSDTGAMQRGDAV 677
            GIFW+  G+       AL L+ +ARDL  A S        H PH          H          E NLRCLVVLDD WDA++V  F   GFH+LVT R   VIPR   G+ ++   +   +A+
Sbjct:  299 GIFWVQVGQVGTGNPMAL-LQGLARDLAHAPS--------HQPHTVPHEFVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEMLTNAEAL 413
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BLAST of mRNA_H-elongata_contig5354.12709.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-8
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  142 LASVPREAPLLPSIYVESLAAVERVVLDLIDSSRQTPAVHYLVGPEGSGKTLLASEVVREPR 327
            LA +PREAP+LP+ YV+  A +E VV DL    R   A H L+G  G GKTL+AS VVR+ R
Sbjct:  232 LAEIPREAPVLPTTYVQRTAMLEEVVDDLTHPHRSASATHCLLGMGGGGKTLIASSVVRDDR 293
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BLAST of mRNA_H-elongata_contig5354.12709.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.940e-7
Identity = 39/116 (33.62%), Postives = 53/116 (45.69%), Query Frame = 3 
Query:  330 GIFWLTAGRDSKATDAALFLERVARDLDAASSRDAAANAVHNPHPRHHFRRFGNSAVEGNLRCLVVLDDAWDAKVVEAFARAGFHALVTARRRNVIPRSSGGLWSDTGAMQRGDAV 677
            GIFW+  G+       AL L+ +A DL  A S              H          +GNLRCLVVLD+ WD ++V  F R GF  LVT R   ++PR   G  +    +   +A+
Sbjct:  258 GIFWVQVGQVGTGNPTAL-LKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEAL 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5354.12709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL58_ECTSI2.120e-1037.90NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FH19_ECTSI1.100e-853.23NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L982_9PHAE7.940e-733.62NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5354contigH-elongata_contig5354:7304..8000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue4.2e-08
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size678
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5354.12709.1prot_H-elongata_contig5354.12709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5354 7391..8000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.4675393-UTR-H-elongata_contig5354:7303..73901622930873.4675393-UTR-H-elongata_contig5354:7303..7390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5354 7304..7390 -
1691679606.5120473-UTR-H-elongata_contig5354:7303..73901691679606.5120473-UTR-H-elongata_contig5354:7303..7390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5354 7304..7390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.479185-CDS-H-elongata_contig5354:7390..76541622930873.479185-CDS-H-elongata_contig5354:7390..7654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 7391..7654 -
1691679606.523272-CDS-H-elongata_contig5354:7390..76541691679606.523272-CDS-H-elongata_contig5354:7390..7654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 7391..7654 -
1622930873.4926178-CDS-H-elongata_contig5354:7673..80001622930873.4926178-CDS-H-elongata_contig5354:7673..8000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 7674..8000 -
1691679606.53161-CDS-H-elongata_contig5354:7673..80001691679606.53161-CDS-H-elongata_contig5354:7673..8000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5354 7674..8000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5354.12709.1

>prot_H-elongata_contig5354.12709.1 ID=prot_H-elongata_contig5354.12709.1|Name=mRNA_H-elongata_contig5354.12709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MLVALAARSNGDRDKLVRILNDDGGDSGNGSDPETEEHRNAAAVGEKLAS
VPREAPLLPSIYVESLAAVERVVLDLIDSSRQTPAVHYLVGPEGSGKTLL
ASEVVREPRTESSGSPRGVTARRPTPPCFSSAWRVILTPRLRGTLQQTRC
ITPTPATTSAGSETPQSRETFGAWWYSTTRGTLRLWRPSRARVFMR*
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mRNA from alignment at H-elongata_contig5354:7304..8000-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5354.12709.1 ID=mRNA_H-elongata_contig5354.12709.1|Name=mRNA_H-elongata_contig5354.12709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=697bp|location=Sequence derived from alignment at H-elongata_contig5354:7304..8000- (Himanthalia elongata Himel1 dioecious)
ATGCTCGTGGCGCTCGCGGCGCGATCGAATGGAGACCGTGACAAGCTCGT
GCGTATTCTAAACGACGACGGCGGTGACAGTGGCAATGGCAGTGATCCCG
AGACAGAGGAACATCGGAATGCCGCCGCCGTGGGAGAGAAACTAGCGAGC
GTACCCCGCGAGGCGCCCTTGCTTCCCTCGATTTACGTAGAAAGCCTCGC
CGCAGTGGAGCGGGTCGTCCTCGACCTGATCGATTCTTCCCGCCAAACTC
CCGCGGTGCACTATCTCGTGGGGCCCGAAGGGTCGGGTAAGACGCTCCTA
GCCTCAGAGGTGGTGAGAGAGCCCCGCGTCCGGAGCAGCTTCAGAGACGG
AATCTTCTGGCTCACCGCGGGGCGTGACAGCAAGGCGACCGACGCCGCCC
TGTTTCTCGAGCGCGTGGCGCGTGATCTTGACGCCGCGTCTTCGAGGGAC
GCTGCAGCAAACGCGGTGCATAACCCCCACCCCCGCCACCACTTCCGCAG
GTTCGGAAACTCCGCAGTCGAGGGAAACCTTCGGTGCTTGGTGGTACTCG
ACGACGCGTGGGACGCTAAGGTTGTGGAGGCCTTCGCGCGCGCGGGTTTT
CATGCGCTAGTTACGGCCCGGCGTCGAAACGTTATCCCTCGCTCGAGCGG
AGGGTTGTGGTCAGATACTGGGGCGATGCAGCGGGGGGATGCCGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig5354:7304..8000-

>mRNA_H-elongata_contig5354.12709.1 ID=mRNA_H-elongata_contig5354.12709.1|Name=mRNA_H-elongata_contig5354.12709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig5354:7304..8000- (Himanthalia elongata Himel1 dioecious)
ATGCTCGTGGCGCTCGCGGCGCGATCGAATGGAGACCGTGACAAGCTCGT
GCGTATTCTAAACGACGACGGCGGTGACAGTGGCAATGGCAGTGATCCCG
AGACAGAGGAACATCGGAATGCCGCCGCCGTGGGAGAGAAACTAGCGAGC
GTACCCCGCGAGGCGCCCTTGCTTCCCTCGATTTACGTAGAAAGCCTCGC
CGCAGTGGAGCGGGTCGTCCTCGACCTGATCGATTCTTCCCGCCAAACTC
CCGCGGTGCACTATCTCGTGGGGCCCGAAGGGTCGGGTAAGACGCTCCTA
GCCTCAGAGGTGGTGAGAGAGCCCCGCATGCTCGTGGCGCTCGCGGCGCG
ATCGAATGGAGACCGTGACAAGCTCGTGCGTATTCTAAACGACGACGGCG
GTGACAGTGGCAATGGCAGTGATCCCGAGACAGAGGAACATCGGAATGCC
GCCGCCGTGGGAGAGAAACTAGCGAGCGTACCCCGCGAGGCGCCCTTGCT
TCCCTCGATTTACGTAGAAAGCCTCGCCGCAGTGGAGCGGGTCGTCCTCG
ACCTGATCGATTCTTCCCGCCAAACTCCCGCGGTGCACTATCTCGTGGGG
CCCGAAGGGTCGGGTAAGACGCTCCTAGCCTCAGAGGTGGTGAGAGAGCC
CCGCACGGAATCTTCTGGCTCACCGCGGGGCGTGACAGCAAGGCGACCGA
CGCCGCCCTGTTTCTCGAGCGCGTGGCGCGTGATCTTGACGCCGCGTCTT
CGAGGGACGCTGCAGCAAACGCGGTGCATAACCCCCACCCCCGCCACCAC
TTCCGCAGGTTCGGAAACTCCGCAGTCGAGGGAAACCTTCGGTGCTTGGT
GGTACTCGACGACGCGTGGGACGCTAAGGTTGTGGAGGCCTTCGCGCGCG
CGGGTTTTCATGCGCTAGACGGAATCTTCTGGCTCACCGCGGGGCGTGAC
AGCAAGGCGACCGACGCCGCCCTGTTTCTCGAGCGCGTGGCGCGTGATCT
TGACGCCGCGTCTTCGAGGGACGCTGCAGCAAACGCGGTGCATAACCCCC
ACCCCCGCCACCACTTCCGCAGGTTCGGAAACTCCGCAGTCGAGGGAAAC
CTTCGGTGCTTGGTGGTACTCGACGACGCGTGGGACGCTAAGGTTGTGGA
GGCCTTCGCGCGCGCGGGTTTTCATGCGCTAG
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