mRNA_H-elongata_contig53536.12705.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53536.12705.1
Unique NamemRNA_H-elongata_contig53536.12705.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: D8LHL7_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL7_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.030e-31
Identity = 65/112 (58.04%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 MGFKSPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKG-NKVAVFSWTRCSTALFLEKKIASRL-------FVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            MGFKSP+D LK+GI +  AG YD+ AV + +  Y  G NKV VFSWTRC      +  I   L       FVELDE  DG+AIR EL + TGRTSVPQIWI GEFVGGCNDG
Sbjct:   65 MGFKSPVDVLKQGIAKIGAGPYDKDAVVKVVDGYTSGSNKVVVFSWTRCPFCKKAKGLIEDLLADPADYEFVELDERQDGNAIRYELSQKTGRTSVPQIWIGGEFVGGCNDG 176          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A8J9RIT3_9CHLO (Probable Glutaredoxin at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIT3_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 1.350e-27
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTALFLEKKI----ASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            SP + +K+ I  A+AG YDE A+   +  YIK N V VFSWTRC   +  ++++    A  L VELD M DG+AIR+EL + T RTS+P +WI+GE +GGCNDG
Sbjct:   67 SPANAVKKAIAAAQAGQYDEAAIGGKVDAYIKDNPVVVFSWTRCPFCIKAKRELDSLNAKYLAVELDTMADGNAIRSELAKRTNRTSMPNVWINGEGIGGCNDG 170          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: K0TLI2_THAOC (Glutaredoxin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLI2_THAOC)

HSP 1 Score: 98.6 bits (244), Expect = 9.980e-24
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   13 SPLDGL-------KRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTALFLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            SPLD +       K G+V++ AG+YD  A++  + Q I  NKV ++S+T       L++K A    +ELD+  DG AIR ELG++ GRTSVP IWIDG+F+GGCNDG
Sbjct:   58 SPLDNILGFIKGGKIGLVKSIAGEYDADAIRLRVDQDIAKNKVLMYSFTTVKAKAVLDEKNAKYTAIELDKDEDGKAIRAELGDILGRTSVPAIWIDGKFIGGCNDG 164          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A835YLP8_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.170e-22
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTALFLEKKIASRL------FVELDEMGD-GDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            SP +  K+ I +A  G+Y+E  V   I  YI  NKV VFSWT C      + ++A  +       VELD+  + G A R EL ++TGRTSVPQIWI GEF+GGCNDG
Sbjct:   57 SPFNQFKKFIAKAGTGEYNEAEVAGKINSYIADNKVMVFSWTNCPFCKKAKAQLAELMEPSQYKVVELDQDAELGKAYRFELSKITGRTSVPQIWIKGEFIGGCNDG 163          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A2P6TGA2_CHLSO (Glyoxalase domain-containing 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGA2_CHLSO)

HSP 1 Score: 90.5 bits (223), Expect = 9.930e-21
Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   19 LDGLKRGIVRAK---AGDYDEGAVQEAIGQYIKGNKVAVFSWTRCS----TALFLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            LD   +G V+A    AG YDE A + AI +YI  N V VFSW+ C         L+   A    +ELD+M DG A+R EL + TGR+SVP IWI G+ VGGCNDG
Sbjct:   47 LDFFNQGKVQAAVAAAGQYDEAATKAAIEKYIADNPVVVFSWSGCPFCKRAKAVLDATGAKYTALELDQMADGKALRAELAKKTGRSSVPNIWIAGQNVGGCNDG 151          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A383W3I8_TETOB (Glutaredoxin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3I8_TETOB)

HSP 1 Score: 90.5 bits (223), Expect = 1.380e-20
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRC----STALFLEKKIASRLFVELDEMG-DGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            SP++  K+ + +A+AGDYDE AV+  I   IK NKV VFSW+ C    +    L    A    +ELD +G +G  IR EL  MT RTSVP IWI G+ VGGCNDG
Sbjct:   60 SPINEGKKALAKAQAGDYDEKAVRGKIEGLIKDNKVMVFSWSGCPFCKNAKALLSDVGADFTALELDTLGQEGKQIRAELAAMTERTSVPNIWIAGKNVGGCNDG 164          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: F0YJ46_AURAN (Selenoprotein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ46_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 2.340e-20
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTR---CSTAL-FLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            SPL+  K+ +V+  AG YDE AV+  +   I G  V + S+ R   C  A   L+ K A    VELDE+ DG A+R ELG + GRTSVP IWI  +FVGGCNDG
Sbjct:   55 SPLNEGKKAVVKMLAGPYDEVAVRAKLDGLIAGEPVLMLSFVRXPFCVKAKQLLDAKGAKYTVVELDEVSDGPALRAELGGLVGRTSVPAIWIQSDFVGGCNDG 158          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A2V0PHJ4_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHJ4_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 7.230e-20
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   10 KSPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCS----TALFLEKKIASRLFVELDEMG-DGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            +SPL+  K+ + + +AGDYDE AV+  +   + G  V +FS++ C         L +  AS   +EL+EMG DG  +R EL +MT RTS+P IWI G FVGGCNDG
Sbjct:   56 ESPLNKGKKALAKLQAGDYDEAAVRAKLEGILTGTPVVMFSFSTCPFCNRAKALLNELGASYEAIELNEMGKDGMQLRAELAQMTDRTSMPSIWIQGSFVGGCNDG 161          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A1Z5KEB6_FISSO (Glutaredoxin domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEB6_FISSO)

HSP 1 Score: 87.0 bits (214), Expect = 2.740e-19
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   19 LDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTAL----FLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            L   K+ +VR  AG+YD  AV+  I   IK N V + S+T C   +     L+ K A+   VEL+E   G AIR EL ++ GR+SVP IWI GEF+GGCNDG
Sbjct:   57 LKDAKKALVRKLAGEYDSEAVRARIDNLIKTNDVLMLSFTTCPYCIKAKQVLDAKSANYTVVELNEDPAGTAIRAELFDLVGRSSVPAIWIGGEFIGGCNDG 158          
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Match: A0A061R5D6_9CHLO (Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5D6_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-18
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   13 SPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCSTAL----FLEKKIASRLFVELDEMG-DGDAIRNELGEMTGRTSVPQIWIDGEFVGGCNDG 312
            SPL+  K  + + +AGDYD+ AV+  +   I   KV VFS++ C   +     L+   A    VEL++MG +G AIR EL E+TGRTS+P IWI GE +GGCNDG
Sbjct:   86 SPLNKGKIELAKLQAGDYDKTAVRAKVENXISSEKVVVFSFSTCPFCVKAKELLQDVGAEYEAVELNDMGKEGYAIRAELAELTGRTSMPNIWIAGEGIGGCNDG 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53536.12705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHL7_ECTSI1.030e-3158.04Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A8J9RIT3_9CHLO1.350e-2750.00Probable Glutaredoxin at C-terminar half n=1 Tax=C... [more]
K0TLI2_THAOC9.980e-2447.66Glutaredoxin domain-containing protein n=1 Tax=Tha... [more]
A0A835YLP8_9STRA3.170e-2247.66Selenoprotein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A2P6TGA2_CHLSO9.930e-2148.57Glyoxalase domain-containing 4 n=1 Tax=Chlorella s... [more]
A0A383W3I8_TETOB1.380e-2049.52Glutaredoxin domain-containing protein n=1 Tax=Tet... [more]
F0YJ46_AURAN2.340e-2049.04Selenoprotein (Fragment) n=1 Tax=Aureococcus anoph... [more]
A0A2V0PHJ4_9CHLO7.230e-2045.28Glutaredoxin domain-containing protein n=1 Tax=Rap... [more]
A0A1Z5KEB6_FISSO2.740e-1947.06Glutaredoxin domain-containing protein n=1 Tax=Fis... [more]
A0A061R5D6_9CHLO1.590e-1846.67Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53536contigH-elongata_contig53536:1350..2457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog159749.K0TLI2
KEGG koko:K03676
GOsGO:0000302,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006091,GO:0006139,GO:0006259,GO:0006355,GO:0006518,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006807,GO:0006915,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008219,GO:0008794,GO:0009055,GO:0009266,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010646,GO:0012501,GO:0015036,GO:0015037,GO:0015038,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0019219,GO:0019222,GO:0019725,GO:0022900,GO:0023051,GO:0030154,GO:0030611,GO:0030613,GO:0030614,GO:0031323,GO:0031326,GO:0031668,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034641,GO:0042221,GO:0042262,GO:0042493,GO:0042542,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046483,GO:0046677,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051186,GO:0051252,GO:0051716,GO:0051775,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.Glutaredoxin
EggNOG OGs2XDVS@2836,COG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53536.12705.1prot_H-elongata_contig53536.12705.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53536 1350..2457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.8733308-CDS-H-elongata_contig53536:1349..14981622930872.8733308-CDS-H-elongata_contig53536:1349..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53536 1350..1498 +
1691679606.3657584-CDS-H-elongata_contig53536:1349..14981691679606.3657584-CDS-H-elongata_contig53536:1349..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53536 1350..1498 +
1622930872.8921103-CDS-H-elongata_contig53536:2102..21391622930872.8921103-CDS-H-elongata_contig53536:2102..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53536 2103..2139 +
1691679606.3786156-CDS-H-elongata_contig53536:2102..21391691679606.3786156-CDS-H-elongata_contig53536:2102..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53536 2103..2139 +
1622930872.9161534-CDS-H-elongata_contig53536:2331..24571622930872.9161534-CDS-H-elongata_contig53536:2331..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53536 2332..2457 +
1691679606.3893235-CDS-H-elongata_contig53536:2331..24571691679606.3893235-CDS-H-elongata_contig53536:2331..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53536 2332..2457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53536.12705.1

>prot_H-elongata_contig53536.12705.1 ID=prot_H-elongata_contig53536.12705.1|Name=mRNA_H-elongata_contig53536.12705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MGFKSPLDGLKRGIVRAKAGDYDEGAVQEAIGQYIKGNKVAVFSWTRCST
ALFLEKKIASRLFVELDEMGDGDAIRNELGEMTGRTSVPQIWIDGEFVGG
CNDG
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mRNA from alignment at H-elongata_contig53536:1350..2457+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53536.12705.1 ID=mRNA_H-elongata_contig53536.12705.1|Name=mRNA_H-elongata_contig53536.12705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig53536:1350..2457+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTTAAGAGCCCCTTGGATGGACTGAAGCGGGGAATCGTGAGGGC GAAGGCGGGCGACTACGATGAAGGAGCTGTCCAGGAGGCTATTGGCCAGT ACATCAAGGGGAACAAAGTTGCGGTTTTCTCGTGGACAAGGTGCAGTACG TCGTGGTATCTCAGGCGGGTGCAAAGAGCAATAGAGGCGATGTTTGATCG CCGGGTGTGACCGGTGCGTGGTGTGCTGGGACCTCGGGGCTGATGCTCCG ATTTGAGCTGTAGCTACAGTTAATAGTGAGGTGCAACGGAATACGTAAAG AAAGAGCCAAATGCAGGACGCAGTTGTAAGCTTTCAGGGGTTTTAAATCT CGCCAGTTTGTTTTCTGTCTACTAGCTTGATTTAATTTCTGATTCTGAGC CAAGATACGGGGCGTTATCGTATGGCATTCTCTCTCACGCATCTCTCTCT TTCTCTCTCGAGGCGCTTTTAATGCTCTCTCTCCCCATCCTGTTCTCCTG CTGCAGTTAATCCTGTTGACCCCCGTCCCCCCCGTCCCGTCCCGTCCTGA AATGTTCTTTCGTCAGGTGCCCGTTCTGCAAGAAAGCTAAGGGTCTGCTA GCGGATCTTCTGGTTGACCCCTTGGACTACAAGGTGACGCCCATGGCTGT GGACAACCGAGAAGGATCCTCCCATCCCCCCGCCCGTTTTTCCAGATGTC GTGTCAGATTGCGCGCTTGCTGTAGTAGACCTAGATCAGAACTACGCAAG CAGCGCCCTTTTTCTCGAAAAAAAAATAGCGTCACGGCTTGTGCGAATCA CCCAAATCTCCGACTCGCGGCCACTCTAGCCTTGCACAGGTGGTTGGACG TGGTCAGTTTACAAAAAAAAATCCCGGCCCTCGATCTCCCCGCCCCCCCA ATACACCACACACCACCATGTCCTCGGCGCGCCCGGCCTTTTCTTCTTTT TCTCCTATCTTCGTTGTCCTTCTCGTGTACAGTTTGTCGAACTGGACGAA ATGGGAGACGGAGACGCGATCCGCAACGAGCTGGGCGAGATGACGGGCAG GACGAGCGTTCCCCAGATATGGATCGACGGGGAATTCGTCGGCGGCTGCA ACGACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig53536:1350..2457+

>mRNA_H-elongata_contig53536.12705.1 ID=mRNA_H-elongata_contig53536.12705.1|Name=mRNA_H-elongata_contig53536.12705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig53536:1350..2457+ (Himanthalia elongata Himel1 dioecious)
ATGGGGTTTAAGAGCCCCTTGGATGGACTGAAGCGGGGAATCGTGAGGGC
GAAGGCGGGCGACTACGATGAAGGAGCTGTCCAGGAGGCTATTGGCCAGT
ACATCAAGGGGAACAAAGTTGCGGTTTTCTCGTGGACAAGGTGCAGTACA
TGGGGTTTAAGAGCCCCTTGGATGGACTGAAGCGGGGAATCGTGAGGGCG
AAGGCGGGCGACTACGATGAAGGAGCTGTCCAGGAGGCTATTGGCCAGTA
CATCAAGGGGAACAAAGTTGCGGTTTTCTCGTGGACAAGGTGCAGTACCG
CCCTTTTTCTCGAAAAAAAAATAGCGTCACGGCTTCGCCCTTTTTCTCGA
AAAAAAAATAGCGTCACGGCTTTTTGTCGAACTGGACGAAATGGGAGACG
GAGACGCGATCCGCAACGAGCTGGGCGAGATGACGGGCAGGACGAGCGTT
CCCCAGATATGGATCGACGGGGAATTCGTCGGCGGCTGCAACGACGGTTT
TGTCGAACTGGACGAAATGGGAGACGGAGACGCGATCCGCAACGAGCTGG
GCGAGATGACGGGCAGGACGAGCGTTCCCCAGATATGGATCGACGGGGAA
TTCGTCGGCGGCTGCAACGACGGT
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