mRNA_H-elongata_contig53525.12703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53525.12703.1
Unique NamemRNA_H-elongata_contig53525.12703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig53525.12703.1 vs. uniprot
Match: A0A6H5JWZ4_9PHAE (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.630e-19
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 SELFLERFAAQAFSHAENLGRRTIKYQDVSDVRVEDPNLVFLEAVVPP 144
            SE+FLE+FAA+AF HAE LGR+TIKY+DVSDVR+EDPNL+FLEAVVPP
Sbjct:  166 SEIFLEKFAARAFDHAEKLGRKTIKYRDVSDVRLEDPNLLFLEAVVPP 213
[Close]
BLAST of mRNA_H-elongata_contig53525.12703.1 vs. uniprot
Match: D8LBX1_ECTSI (Histone-like transcription factor family (CBF/NF-Y) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-18
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 SELFLERFAAQAFSHAENLGRRTIKYQDVSDVRVEDPNLVFLEAVVPP 144
            SE+FLE+ AA+AF HAE LGR+TIKY+DVSDVRVEDPNL+FLEAVVPP
Sbjct:  170 SEIFLEKLAARAFDHAEKLGRKTIKYRDVSDVRVEDPNLLFLEAVVPP 217
[Close]
BLAST of mRNA_H-elongata_contig53525.12703.1 vs. uniprot
Match: A0A6V1PCP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PCP5_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-9
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    7 LFLERFAAQAFSHAENLGRRTIKYQDVSDVRVEDPNLVFLEAVVP 141
            LFLE+FA  +F+ A+  G + I+Y+DV+D RV DPNL+FLE V+P
Sbjct:  107 LFLEKFAQDSFAKAQTRGAKMIRYEDVADARVSDPNLLFLEGVIP 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53525.12703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWZ4_9PHAE4.630e-1981.25CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
D8LBX1_ECTSI1.400e-1881.25Histone-like transcription factor family (CBF/NF-Y... [more]
A0A6V1PCP5_HETAK1.540e-955.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53525contigH-elongata_contig53525:1569..1715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) domain
Ec32 orthologEc-20_003590.1
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.6719997-CDS-H-elongata_contig53525:1568..17151622930872.6719997-CDS-H-elongata_contig53525:1568..1715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53525 1569..1715 -
1691679606.3244092-CDS-H-elongata_contig53525:1568..17151691679606.3244092-CDS-H-elongata_contig53525:1568..1715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53525 1569..1715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53525.12703.1prot_H-elongata_contig53525.12703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53525 1569..1715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53525.12703.1

>prot_H-elongata_contig53525.12703.1 ID=prot_H-elongata_contig53525.12703.1|Name=mRNA_H-elongata_contig53525.12703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
SELFLERFAAQAFSHAENLGRRTIKYQDVSDVRVEDPNLVFLEAVVPP*
back to top

mRNA from alignment at H-elongata_contig53525:1569..1715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53525.12703.1 ID=mRNA_H-elongata_contig53525.12703.1|Name=mRNA_H-elongata_contig53525.12703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig53525:1569..1715- (Himanthalia elongata Himel1 dioecious)
AGCGAGCTGTTTCTGGAGAGATTCGCGGCCCAGGCGTTCAGCCACGCCGA
GAATCTCGGGAGGAGAACGATCAAGTACCAAGATGTTAGCGACGTGCGCG
TAGAGGATCCCAACCTCGTGTTCTTAGAGGCGGTCGTGCCTCCCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53525:1569..1715-

>mRNA_H-elongata_contig53525.12703.1 ID=mRNA_H-elongata_contig53525.12703.1|Name=mRNA_H-elongata_contig53525.12703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig53525:1569..1715- (Himanthalia elongata Himel1 dioecious)
AGCGAGCTGTTTCTGGAGAGATTCGCGGCCCAGGCGTTCAGCCACGCCGA
GAATCTCGGGAGGAGAACGATCAAGTACCAAGATGTTAGCGACGTGCGCG
TAGAGGATCCCAACCTCGTGTTCTTAGAGGCGGTCGTGCCTCCCTAGAGC
GAGCTGTTTCTGGAGAGATTCGCGGCCCAGGCGTTCAGCCACGCCGAGAA
TCTCGGGAGGAGAACGATCAAGTACCAAGATGTTAGCGACGTGCGCGTAG
AGGATCCCAACCTCGTGTTCTTAGAGGCGGTCGTGCCTCCCTAG
back to top