mRNA_H-elongata_contig53522.12701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53522.12701.1
Unique NamemRNA_H-elongata_contig53522.12701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Match: D8LKG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-16
Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAE 126
            +DE+LR +LRRIPGCPLV+VSRTVL+MEQPSGKSKAEFEKAE
Sbjct:   87 QDENLRVRLRRIPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 128
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BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Match: A0A6H5KVJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.080e-15
Identity = 35/42 (83.33%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAE 126
            +DE+LR +LRR+PGCPLV+VSRTVL+MEQPSGKSKAEFEKAE
Sbjct:  144 QDENLRMRLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAE 185
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BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Match: A0A836CFL8_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.160e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAE 126
            +DE+LR +LR + GCPL+Y+S+TVLLMEQ SGK+KA FE  E
Sbjct:  122 QDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALE 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53522.12701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKG1_ECTSI1.610e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVJ1_9PHAE3.080e-1583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFL8_9STRA3.160e-964.29Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53522contigH-elongata_contig53522:268..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-16_002850.1
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930872.5529914-CDS-H-elongata_contig53522:267..3961622930872.5529914-CDS-H-elongata_contig53522:267..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53522 268..396 +
1691679606.2967737-CDS-H-elongata_contig53522:267..3961691679606.2967737-CDS-H-elongata_contig53522:267..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53522 268..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53522.12701.1prot_H-elongata_contig53522.12701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53522 268..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53522.12701.1

>prot_H-elongata_contig53522.12701.1 ID=prot_H-elongata_contig53522.12701.1|Name=mRNA_H-elongata_contig53522.12701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
KDEDLRFQLRRIPGCPLVYVSRTVLLMEQPSGKSKAEFEKAEV
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mRNA from alignment at H-elongata_contig53522:268..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53522.12701.1 ID=mRNA_H-elongata_contig53522.12701.1|Name=mRNA_H-elongata_contig53522.12701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig53522:268..396+ (Himanthalia elongata Himel1 dioecious)
AAGGATGAGGATCTGAGGTTTCAGTTGAGGCGTATACCTGGCTGTCCCCT
GGTGTACGTATCCCGAACGGTGCTGCTTATGGAGCAGCCGTCGGGAAAGA
GCAAGGCGGAGTTCGAAAAGGCCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig53522:268..396+

>mRNA_H-elongata_contig53522.12701.1 ID=mRNA_H-elongata_contig53522.12701.1|Name=mRNA_H-elongata_contig53522.12701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig53522:268..396+ (Himanthalia elongata Himel1 dioecious)
AAGGATGAGGATCTGAGGTTTCAGTTGAGGCGTATACCTGGCTGTCCCCT
GGTGTACGTATCCCGAACGGTGCTGCTTATGGAGCAGCCGTCGGGAAAGA
GCAAGGCGGAGTTCGAAAAGGCCGAGGTAAAGGATGAGGATCTGAGGTTT
CAGTTGAGGCGTATACCTGGCTGTCCCCTGGTGTACGTATCCCGAACGGT
GCTGCTTATGGAGCAGCCGTCGGGAAAGAGCAAGGCGGAGTTCGAAAAGG
CCGAGGTA
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