mRNA_H-elongata_contig116102.1270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116102.1270.1
Unique NamemRNA_H-elongata_contig116102.1270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116102.1270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116102contigH-elongata_contig116102:166..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size670
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116102.1270.1prot_H-elongata_contig116102.1270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116102 169..522 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.6025221-UTR-H-elongata_contig116102:165..1681622929674.6025221-UTR-H-elongata_contig116102:165..168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116102 166..168 +
1691679114.880116-UTR-H-elongata_contig116102:165..1681691679114.880116-UTR-H-elongata_contig116102:165..168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116102 166..168 +
1622929674.6394393-UTR-H-elongata_contig116102:522..8351622929674.6394393-UTR-H-elongata_contig116102:522..835Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116102 523..835 +
1691679114.8970482-UTR-H-elongata_contig116102:522..8351691679114.8970482-UTR-H-elongata_contig116102:522..835Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116102 523..835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.6216795-CDS-H-elongata_contig116102:168..5221622929674.6216795-CDS-H-elongata_contig116102:168..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116102 169..522 +
1691679114.8887534-CDS-H-elongata_contig116102:168..5221691679114.8887534-CDS-H-elongata_contig116102:168..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116102 169..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116102.1270.1

>prot_H-elongata_contig116102.1270.1 ID=prot_H-elongata_contig116102.1270.1|Name=mRNA_H-elongata_contig116102.1270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MSTLHDQASTLISIYMNLIQVLHKSCGAPVPSPPPRSVYCVCIVRSWHTL
YEVLCMCGDEGERMLLGKVHRNMETWRRTYRDQRNGTYFFHTNNKWITES
TDFCFAVPLELWLVFGC*
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mRNA from alignment at H-elongata_contig116102:166..835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116102.1270.1 ID=mRNA_H-elongata_contig116102.1270.1|Name=mRNA_H-elongata_contig116102.1270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig116102:166..835+ (Himanthalia elongata Himel1 dioecious)
CTCATGTCTACGCTGCACGATCAGGCAAGCACTCTAATTAGCATTTATAT
GAATCTTATACAAGTCTTGCATAAGTCTTGCGGTGCACCGGTACCATCAC
CACCCCCAAGGAGTGTGTATTGTGTGTGTATTGTGCGGTCATGGCATACA
TTGTATGAAGTATTGTGCATGTGTGGTGATGAAGGAGAGAGGATGTTGCT
TGGGAAGGTGCATCGAAACATGGAAACATGGAGACGTACGTATCGAGACC
AGCGGAACGGAACGTATTTTTTTCACACTAATAATAAATGGATTACCGAG
TCCACTGATTTTTGTTTTGCTGTACCCCTAGAGCTATGGTTGGTCTTTGG
TTGCTAGAAGATCTTCCTAGAGAATGAGTTATCTTACTATTAATGTGCAC
AATGAAATATAAAGGTGTGCGTCACTTGATCATTTGACGCCAATACCGGC
CGTATCTAGATCTTTCGCGCGGTAAGCCACTGTTGAGGTTTCAATACCAT
ACCATACTGTACCGTGATATGAACTATATCGCTCGTCGGAAATACCGGCC
GAATCTGGATGATGATGGTACATATATGAAATAAAGAGTAACGATGAAAG
ATAATGGTGTGATGATGTTAATATAAGATGTCGATGTCGATTATGATGAT
CGCAATCACGTCCTTTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig116102:166..835+

>mRNA_H-elongata_contig116102.1270.1 ID=mRNA_H-elongata_contig116102.1270.1|Name=mRNA_H-elongata_contig116102.1270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig116102:166..835+ (Himanthalia elongata Himel1 dioecious)
ATGTCTACGCTGCACGATCAGGCAAGCACTCTAATTAGCATTTATATGAA
TCTTATACAAGTCTTGCATAAGTCTTGCGGTGCACCGGTACCATCACCAC
CCCCAAGGAGTGTGTATTGTGTGTGTATTGTGCGGTCATGGCATACATTG
TATGAAGTATTGTGCATGTGTGGTGATGAAGGAGAGAGGATGTTGCTTGG
GAAGGTGCATCGAAACATGGAAACATGGAGACGTACGTATCGAGACCAGC
GGAACGGAACGTATTTTTTTCACACTAATAATAAATGGATTACCGAGTCC
ACTGATTTTTGTTTTGCTGTACCCCTAGAGCTATGGTTGGTCTTTGGTTG
CTAGATGTCTACGCTGCACGATCAGGCAAGCACTCTAATTAGCATTTATA
TGAATCTTATACAAGTCTTGCATAAGTCTTGCGGTGCACCGGTACCATCA
CCACCCCCAAGGAGTGTGTATTGTGTGTGTATTGTGCGGTCATGGCATAC
ATTGTATGAAGTATTGTGCATGTGTGGTGATGAAGGAGAGAGGATGTTGC
TTGGGAAGGTGCATCGAAACATGGAAACATGGAGACGTACGTATCGAGAC
CAGCGGAACGGAACGTATTTTTTTCACACTAATAATAAATGGATTACCGA
GTCCACTGATTTTTGTTTTGCTGTACCCCTAGAGCTATGGTTGGTCTTTG
GTTGCTAG
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