mRNA_H-elongata_contig53500.12695.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53500.12695.1
Unique NamemRNA_H-elongata_contig53500.12695.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53500.12695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53500contigH-elongata_contig53500:161..3646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2919
Cds size1797
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53500.12695.1prot_H-elongata_contig53500.12695.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53500 1282..3645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.9181428-UTR-H-elongata_contig53500:160..12811622930871.9181428-UTR-H-elongata_contig53500:160..1281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53500 161..1281 -
1691679606.0783918-UTR-H-elongata_contig53500:160..12811691679606.0783918-UTR-H-elongata_contig53500:160..1281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53500 161..1281 -
1622930871.9961596-UTR-H-elongata_contig53500:3645..36461622930871.9961596-UTR-H-elongata_contig53500:3645..3646Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53500 3646..3646 -
1691679606.1226668-UTR-H-elongata_contig53500:3645..36461691679606.1226668-UTR-H-elongata_contig53500:3645..3646Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53500 3646..3646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.9405065-CDS-H-elongata_contig53500:1281..19531622930871.9405065-CDS-H-elongata_contig53500:1281..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53500 1282..1953 -
1691679606.0975657-CDS-H-elongata_contig53500:1281..19531691679606.0975657-CDS-H-elongata_contig53500:1281..1953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53500 1282..1953 -
1622930871.9603803-CDS-H-elongata_contig53500:2520..36451622930871.9603803-CDS-H-elongata_contig53500:2520..3645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53500 2521..3645 -
1691679606.1089382-CDS-H-elongata_contig53500:2520..36451691679606.1089382-CDS-H-elongata_contig53500:2520..3645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53500 2521..3645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53500.12695.1

>prot_H-elongata_contig53500.12695.1 ID=prot_H-elongata_contig53500.12695.1|Name=mRNA_H-elongata_contig53500.12695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=599bp
MRSRLARYPCMDIPRLVPDEELGDKPIRNEALFGDDGVVDTREEAEFPGR
GKGKGLRNGTVQERRTATDKETVETEANVDEGKAERLSEARDHRGKGRGS
VTVVAGVEVGGSGSGYGDEIDGSIDGWNSGDSRRGRRRSVVASSAPGDGS
YVPRQRQGDGARRVEVEATIQYSRFVGGVAEMSPVAVKTAAHHSKIKNSG
NSGSDDSGGEMKRSSERARSAMVAAEGVRWGNSAPREGTVEAVTELTPVR
RYSRRRSSRRRRSRTWGTASEDDCGDPVAGIWNSPSPQASIGRDGRTDGG
YKTDGGVDGGGDDSVWVKNTKGEETGDDDSPDGTVVVVEDDRGLGLDAES
DGGEFGEEEEEGTEFHGLPPLVTPTFRERAMMTAEEEVSGIEMPLGAANR
RWDHGRPPPISRLTHVTSRPVVSTGLVSPQGGGAGGGFSKGGGGFGGSGG
GGRVTSRPPPCPSDASARGGGAPHRKATLNSGGDISSSRRPGAEGISGTG
ELVSVGFGIGVGPAAPEHDVPNKFVNIRNAFEMQANKAAAAVVVVVGTDL
PPAIPGSDIRGNGGGRAVAEGEAPPHGSFDRAPSSLSASSSSSSQGLR*
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mRNA from alignment at H-elongata_contig53500:161..3646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53500.12695.1 ID=mRNA_H-elongata_contig53500.12695.1|Name=mRNA_H-elongata_contig53500.12695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3486bp|location=Sequence derived from alignment at H-elongata_contig53500:161..3646- (Himanthalia elongata Himel1 dioecious)
GATGCGTTCCCGGCTTGCGCGGTACCCGTGCATGGACATCCCGCGACTCG
TGCCGGATGAGGAGCTGGGAGACAAGCCCATTCGAAACGAGGCCCTCTTC
GGCGACGACGGCGTCGTCGACACTAGGGAGGAAGCGGAGTTCCCTGGGAG
AGGAAAGGGCAAGGGGTTGCGCAACGGCACCGTGCAAGAGAGGCGGACAG
CGACGGATAAGGAGACTGTCGAGACGGAGGCAAATGTGGACGAGGGCAAA
GCGGAGCGTTTGAGCGAGGCGAGGGATCACCGAGGGAAGGGGCGGGGTTC
CGTTACGGTTGTTGCCGGGGTCGAGGTCGGTGGCAGCGGCAGCGGTTACG
GAGACGAAATCGACGGGAGCATCGACGGCTGGAACAGCGGCGACTCCCGC
CGGGGGCGCCGCCGATCCGTGGTCGCCTCGAGCGCGCCAGGCGATGGCTC
TTACGTGCCGCGGCAGAGGCAGGGAGATGGGGCGCGTCGCGTCGAGGTCG
AGGCTACGATCCAGTACTCGAGGTTTGTCGGCGGTGTTGCCGAGATGTCG
CCGGTGGCTGTGAAGACAGCGGCCCATCATAGCAAGATCAAGAATAGTGG
CAATAGTGGCAGTGACGATAGCGGCGGGGAAATGAAAAGAAGCTCTGAAC
GGGCGAGGTCGGCGATGGTAGCAGCAGAAGGAGTAAGGTGGGGGAATTCG
GCGCCGAGGGAGGGCACCGTTGAAGCCGTGACGGAGTTGACGCCGGTACG
CCGATATAGCCGCCGACGGAGCAGTCGCCGGCGCCGCAGCCGCACGTGGG
GCACGGCCAGCGAGGACGACTGCGGCGATCCTGTCGCGGGGATCTGGAAC
TCGCCCTCTCCCCAGGCCTCGATAGGGAGGGATGGCCGTACGGACGGGGG
TTACAAAACCGACGGAGGTGTTGACGGCGGTGGTGATGACTCGGTGTGGG
TCAAGAATACAAAGGGTGAGGAAACCGGGGACGATGACAGCCCGGACGGG
ACTGTGGTTGTTGTGGAGGACGACCGCGGTCTGGGCTTGGACGCCGAGAG
CGACGGCGGAGAGTTCGGCGAGGAGGAGGAAGAGGGGACTGAATTCCATG
GACTGCCTCCGCTGGTGACCCCTACGGTGAGAAGAGAACGAAAGGGATCG
TTGCAAAGACTTGGTGGGAAAGGGGTGTGGATTGGAGGCTTTGGTCCTGT
GCCAAGCGCTGTCGCCCCGTCCCGTGGTCGTCTCTACTGGTAAAAAATAA
ATAATTTATTTTTATATATATATATATATATATATAGCCGTGCTGACAAC
TTTGAGTCGTCCTTGGTTTTGGGAAACTTCCAGTCTAACATCCAAGGCAG
GCAAAAGTTGTGTACTGCACCTCACCCCAAGAGCCCGCGCCCCGCGCTTT
TGGTTGTTGTTTGTAGAAGCTTTCAATAAGAGCAGCGGCGGCAGCGTGTT
TGTGTGCTGAATAGCACGGGAGTAGGACTGTGGAACGTAGCGCGCACACT
TTTGACTCGGACGGTTTTACAACTCTTAGCAGCGGCAGCAGCGTGACATT
CGTGGTAGACGATTCTTGTGTGAACCAAATGTTGGTTCTGGAGTCGCGCC
AATGTTTATCGTCTTTTCTAGTGTTATATTATTTTTTATGTTATTATCCC
TACCACCCCCTGGATGGGAAACGTTCGATTCTGAAAACCCCAGTTTCGAG
AGCGAGCGATGATGACCGCCGAGGAAGAAGTGAGCGGGATTGAGATGCCG
CTCGGTGCTGCCAACCGAAGGTGGGACCACGGGAGGCCGCCCCCGATCTC
CCGCTTGACACACGTCACCTCAAGACCCGTCGTGTCCACCGGTCTCGTCT
CCCCCCAAGGCGGAGGCGCCGGTGGGGGCTTCAGCAAGGGTGGCGGAGGC
TTCGGCGGTAGCGGGGGCGGCGGCAGAGTCACTTCCCGCCCGCCGCCCTG
CCCGTCCGACGCCAGCGCGCGGGGCGGCGGTGCGCCTCACCGGAAGGCGA
CATTGAATAGTGGTGGTGACATCAGCAGCAGCAGGAGGCCGGGAGCGGAG
GGAATTTCTGGCACAGGGGAGCTGGTGAGCGTCGGGTTTGGCATCGGCGT
CGGCCCCGCTGCCCCGGAGCACGATGTGCCGAACAAGTTCGTGAACATCC
GCAACGCGTTCGAGATGCAGGCGAACAAGGCCGCTGCGGCTGTTGTTGTT
GTGGTTGGTACTGATCTCCCTCCCGCTATCCCTGGTAGCGATATCAGGGG
AAACGGGGGAGGAAGGGCGGTGGCGGAAGGAGAGGCGCCCCCACATGGTT
CGTTTGACCGCGCGCCTTCGAGTTTGTCTGCCTCGTCTTCTTCCTCCTCT
CAAGGATTGCGGTGACGTCATCGATGACCTCGACCTTGCCTTGCCCGCTC
AAGTGCGTGCCGGCGCGTCATCGCCCGCGCGCGATTTCACGCGACGGCCT
TTGAGCTTAAAAGCGGCACATGAATGGTACGGAAACGTCGGCGGTGGTCG
AGTCGGTTAGAGGAGGGGATAGCACGCGTGTCCCGTTAGTTTCTTTCGAA
CCTTGTGTTTGAGCGGGGGTTCGTGTTGCGTCGTGGGAGACGTCGGATCT
GCTCCCTCCGAAGAGAATATGGTTACATAGGGATTAATGTATGGACTCGC
CTCTAACTAGCCGAAGTTAGTTTGCGGGCGGCAGACCGACGAGAGAGCGC
GCGTAGAGCCTCCTCTCGGGGGTGTAGAATGTTAGCAAGCAGGTTTTGAG
GCGTTTTTTAGTTTTTTAGTTTTAAATGTCAAAAATAATAATGAATGACG
GATGCGGGGGGGAGCATCCTGAATGAAGGGCGAGCAGTGGCGAATATTAG
TACATACGCCCATTCGCCCTGTTTGTGTATGATGTAAAACATTCCCTGGC
TGACGGGGGTTTTATAGAGATAATCTAAATATATATTTTAGAAGTATATT
CGCCAAGTATCACCCCCCCTCTGATGTTTGGGTACCATACGCGAGGCGCC
ACTACTCTTTGTATGTAAAGCTTGTCTCATATACGTGTTTGAAGGCTTGA
AAATCAAGTCGTCTACTATGTGACACCGAATAAACTCTACAAAATGTATG
CACTATAATATGTAAGATGGTCGGGAGGACGGTGGGGGGATCCGGACCCG
CCCCCTCGAAGTACATCCAATCCTTTAGCCGCAAGTACATAATTCTGTGA
TTAATTTATTTTATATTAAAGCTGGTTCCTAACATCTTCTACTTCCTCCG
TTTGTATTTTGTTTCTTTTCGCCTGAGATGAGGCTGGGCTCTTCGCCCCC
CTTCTACATATTTGAGAAGAGGTTAAGAGAGAGAGGGGAGGATGGGGGGG
GGAAGAACCGAAGGGCGGCTTTTCTAATTATCCTCCGAGTCATTCTTCGA
ATAAAAAACGCCTCCCTCTGCTCGTTGTGTATGGTGAATATATGTCGCTT
CCTTGTGTAAAGAGTAGTGGGGATCTATTTGCGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig53500:161..3646-

>mRNA_H-elongata_contig53500.12695.1 ID=mRNA_H-elongata_contig53500.12695.1|Name=mRNA_H-elongata_contig53500.12695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3594bp|location=Sequence derived from alignment at H-elongata_contig53500:161..3646- (Himanthalia elongata Himel1 dioecious)
ATGCGTTCCCGGCTTGCGCGGTACCCGTGCATGGACATCCCGCGACTCGT
GCCGGATGAGGAGCTGGGAGACAAGCCCATTCGAAACGAGGCCCTCTTCG
GCGACGACGGCGTCGTCGACACTAGGGAGGAAGCGGAGTTCCCTGGGAGA
GGAAAGGGCAAGGGGTTGCGCAACGGCACCGTGCAAGAGAGGCGGACAGC
GACGGATAAGGAGACTGTCGAGACGGAGGCAAATGTGGACGAGGGCAAAG
CGGAGCGTTTGAGCGAGGCGAGGGATCACCGAGGGAAGGGGCGGGGTTCC
GTTACGGTTGTTGCCGGGGTCGAGGTCGGTGGCAGCGGCAGCGGTTACGG
AGACGAAATCGACGGGAGCATCGACGGCTGGAACAGCGGCGACTCCCGCC
GGGGGCGCCGCCGATCCGTGGTCGCCTCGAGCGCGCCAGGCGATGGCTCT
TACGTGCCGCGGCAGAGGCAGGGAGATGGGGCGCGTCGCGTCGAGGTCGA
GGCTACGATCCAGTACTCGAGGTTTGTCGGCGGTGTTGCCGAGATGTCGC
CGGTGGCTGTGAAGACAGCGGCCCATCATAGCAAGATCAAGAATAGTGGC
AATAGTGGCAGTGACGATAGCGGCGGGGAAATGAAAAGAAGCTCTGAACG
GGCGAGGTCGGCGATGGTAGCAGCAGAAGGAGTAAGGTGGGGGAATTCGG
CGCCGAGGGAGGGCACCGTTGAAGCCGTGACGGAGTTGACGCCGGTACGC
CGATATAGCCGCCGACGGAGCAGTCGCCGGCGCCGCAGCCGCACGTGGGG
CACGGCCAGCGAGGACGACTGCGGCGATCCTGTCGCGGGGATCTGGAACT
CGCCCTCTCCCCAGGCCTCGATAGGGAGGGATGGCCGTACGGACGGGGGT
TACAAAACCGACGGAGGTGTTGACGGCGGTGGTGATGACTCGGTGTGGGT
CAAGAATACAAAGGGTGAGGAAACCGGGGACGATGACAGCCCGGACGGGA
CTGTGGTTGTTGTGGAGGACGACCGCGGTCTGGGCTTGGACGCCGAGAGC
GACGGCGGAGAGTTCGGCGAGGAGGAGGAAGAGGGGACTGAATTCCATGG
ACTGCCTCCGCTGGTGACCCCTACGATGCGTTCCCGGCTTGCGCGGTACC
CGTGCATGGACATCCCGCGACTCGTGCCGGATGAGGAGCTGGGAGACAAG
CCCATTCGAAACGAGGCCCTCTTCGGCGACGACGGCGTCGTCGACACTAG
GGAGGAAGCGGAGTTCCCTGGGAGAGGAAAGGGCAAGGGGTTGCGCAACG
GCACCGTGCAAGAGAGGCGGACAGCGACGGATAAGGAGACTGTCGAGACG
GAGGCAAATGTGGACGAGGGCAAAGCGGAGCGTTTGAGCGAGGCGAGGGA
TCACCGAGGGAAGGGGCGGGGTTCCGTTACGGTTGTTGCCGGGGTCGAGG
TCGGTGGCAGCGGCAGCGGTTACGGAGACGAAATCGACGGGAGCATCGAC
GGCTGGAACAGCGGCGACTCCCGCCGGGGGCGCCGCCGATCCGTGGTCGC
CTCGAGCGCGCCAGGCGATGGCTCTTACGTGCCGCGGCAGAGGCAGGGAG
ATGGGGCGCGTCGCGTCGAGGTCGAGGCTACGATCCAGTACTCGAGGTTT
GTCGGCGGTGTTGCCGAGATGTCGCCGGTGGCTGTGAAGACAGCGGCCCA
TCATAGCAAGATCAAGAATAGTGGCAATAGTGGCAGTGACGATAGCGGCG
GGGAAATGAAAAGAAGCTCTGAACGGGCGAGGTCGGCGATGGTAGCAGCA
GAAGGAGTAAGGTGGGGGAATTCGGCGCCGAGGGAGGGCACCGTTGAAGC
CGTGACGGAGTTGACGCCGGTACGCCGATATAGCCGCCGACGGAGCAGTC
GCCGGCGCCGCAGCCGCACGTGGGGCACGGCCAGCGAGGACGACTGCGGC
GATCCTGTCGCGGGGATCTGGAACTCGCCCTCTCCCCAGGCCTCGATAGG
GAGGGATGGCCGTACGGACGGGGGTTACAAAACCGACGGAGGTGTTGACG
GCGGTGGTGATGACTCGGTGTGGGTCAAGAATACAAAGGGTGAGGAAACC
GGGGACGATGACAGCCCGGACGGGACTGTGGTTGTTGTGGAGGACGACCG
CGGTCTGGGCTTGGACGCCGAGAGCGACGGCGGAGAGTTCGGCGAGGAGG
AGGAAGAGGGGACTGAATTCCATGGACTGCCTCCGCTGGTGACCCCTACG
TTTCGAGAGCGAGCGATGATGACCGCCGAGGAAGAAGTGAGCGGGATTGA
GATGCCGCTCGGTGCTGCCAACCGAAGGTGGGACCACGGGAGGCCGCCCC
CGATCTCCCGCTTGACACACGTCACCTCAAGACCCGTCGTGTCCACCGGT
CTCGTCTCCCCCCAAGGCGGAGGCGCCGGTGGGGGCTTCAGCAAGGGTGG
CGGAGGCTTCGGCGGTAGCGGGGGCGGCGGCAGAGTCACTTCCCGCCCGC
CGCCCTGCCCGTCCGACGCCAGCGCGCGGGGCGGCGGTGCGCCTCACCGG
AAGGCGACATTGAATAGTGGTGGTGACATCAGCAGCAGCAGGAGGCCGGG
AGCGGAGGGAATTTCTGGCACAGGGGAGCTGGTGAGCGTCGGGTTTGGCA
TCGGCGTCGGCCCCGCTGCCCCGGAGCACGATGTGCCGAACAAGTTCGTG
AACATCCGCAACGCGTTCGAGATGCAGGCGAACAAGGCCGCTGCGGCTGT
TGTTGTTGTGGTTGGTACTGATCTCCCTCCCGCTATCCCTGGTAGCGATA
TCAGGGGAAACGGGGGAGGAAGGGCGGTGGCGGAAGGAGAGGCGCCCCCA
CATGGTTCGTTTGACCGCGCGCCTTCGAGTTTGTCTGCCTCGTCTTCTTC
CTCCTCTCAAGGATTGCGGTGATTTCGAGAGCGAGCGATGATGACCGCCG
AGGAAGAAGTGAGCGGGATTGAGATGCCGCTCGGTGCTGCCAACCGAAGG
TGGGACCACGGGAGGCCGCCCCCGATCTCCCGCTTGACACACGTCACCTC
AAGACCCGTCGTGTCCACCGGTCTCGTCTCCCCCCAAGGCGGAGGCGCCG
GTGGGGGCTTCAGCAAGGGTGGCGGAGGCTTCGGCGGTAGCGGGGGCGGC
GGCAGAGTCACTTCCCGCCCGCCGCCCTGCCCGTCCGACGCCAGCGCGCG
GGGCGGCGGTGCGCCTCACCGGAAGGCGACATTGAATAGTGGTGGTGACA
TCAGCAGCAGCAGGAGGCCGGGAGCGGAGGGAATTTCTGGCACAGGGGAG
CTGGTGAGCGTCGGGTTTGGCATCGGCGTCGGCCCCGCTGCCCCGGAGCA
CGATGTGCCGAACAAGTTCGTGAACATCCGCAACGCGTTCGAGATGCAGG
CGAACAAGGCCGCTGCGGCTGTTGTTGTTGTGGTTGGTACTGATCTCCCT
CCCGCTATCCCTGGTAGCGATATCAGGGGAAACGGGGGAGGAAGGGCGGT
GGCGGAAGGAGAGGCGCCCCCACATGGTTCGTTTGACCGCGCGCCTTCGA
GTTTGTCTGCCTCGTCTTCTTCCTCCTCTCAAGGATTGCGGTGA
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