mRNA_H-elongata_contig53486.12692.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A6H5KZP7_9PHAE (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP7_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 4.880e-11 Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPK 117
GEQGVPV F GLRF+ GQ+VYADEDGIVVSD L VP+
Sbjct: 144 GEQGVPVEFGGLRFKAGQFVYADEDGIVVSDEPLRVPR 181
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: D7FZC9_ECTSI (Regulator of ribonuclease activity A, RraA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC9_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 7.440e-10 Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 7 EQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPK 117
EQGVPV F GLRF+ GQ+VYADEDGI+VSD L VP+
Sbjct: 171 EQGVPVEFGGLRFKAGQFVYADEDGIIVSDEPLRVPR 207
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A836S358_9GAMM (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A836S358_9GAMM) HSP 1 Score: 57.4 bits (137), Expect = 5.200e-9 Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLV 108
GE GVPV FSG+ FRPG+++YADEDG++VS +L+
Sbjct: 125 GESGVPVTFSGVIFRPGEFIYADEDGVIVSSKKLI 159
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A7S0Z1N6_9CRYP (4-hydroxy-4-methyl-2-oxoglutarate aldolase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1N6_9CRYP) HSP 1 Score: 54.3 bits (129), Expect = 3.410e-8 Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPKAAALS 132
G + VPVAF G+ RPGQYVYADEDGI+VSD L A+ +S
Sbjct: 71 GSRDVPVAFGGVSIRPGQYVYADEDGILVSDMPLDQVSASGVS 113
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: UPI001FA792F2 (ribonuclease E activity regulator RraA n=1 Tax=Actinomadura sp. OS3-83 TaxID=604353 RepID=UPI001FA792F2) HSP 1 Score: 54.3 bits (129), Expect = 7.960e-8 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRL 105
GE GVPV+F G+ FRPG ++Y+DEDGIVV+D +L
Sbjct: 125 GETGVPVSFGGVEFRPGDWLYSDEDGIVVADRQL 158
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A1H8G3Z9_9BACL (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Lihuaxuella thermophila TaxID=1173111 RepID=A0A1H8G3Z9_9BACL) HSP 1 Score: 54.3 bits (129), Expect = 9.120e-8 Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 1 QGEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRL 105
+GE G+PV+F+G+++ PG YVYADEDG+VVS +L
Sbjct: 124 KGEAGIPVSFAGIQWEPGHYVYADEDGVVVSKTKL 158
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: W2EHK4_9ACTN (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=2 Tax=Microbispora TaxID=2005 RepID=W2EHK4_9ACTN) HSP 1 Score: 53.9 bits (128), Expect = 1.140e-7 Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVV 111
GE VPV F + FRPGQ+VY+DEDG+VVSD RL V
Sbjct: 125 GEVDVPVTFGDVTFRPGQWVYSDEDGVVVSDERLPV 160
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: UPI0004190DF4 (ribonuclease E activity regulator RraA n=1 Tax=Pseudomonas azotifigens TaxID=291995 RepID=UPI0004190DF4) HSP 1 Score: 53.9 bits (128), Expect = 1.170e-7 Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPK 117
GE GVPV F G+ FRPG+YVYAD +GIVVS L +P+
Sbjct: 125 GELGVPVTFCGVTFRPGEYVYADNNGIVVSPEPLQMPE 162
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: UPI0004A6FBA3 (ribonuclease E activity regulator RraA n=1 Tax=Pelobacter seleniigenes TaxID=407188 RepID=UPI0004A6FBA3) HSP 1 Score: 53.9 bits (128), Expect = 1.210e-7 Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRL 105
GE G+PV+FSG+ FRPG ++YAD DG+VV+D R+
Sbjct: 130 GESGIPVSFSGVMFRPGAWLYADPDGLVVADERI 163
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Match: A0A7S2V174_9STRA (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V174_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.230e-7 Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 4 GEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVP 114
GE VPV F+G++F+PG +VYAD DGIVVS +L +P
Sbjct: 84 GELDVPVEFAGIKFKPGHFVYADTDGIVVSPQKLEIP 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53486.12692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53486.12692.1 >prot_H-elongata_contig53486.12692.1 ID=prot_H-elongata_contig53486.12692.1|Name=mRNA_H-elongata_contig53486.12692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp QGEQGVPVAFSGLRFRPGQYVYADEDGIVVSDNRLVVPKAAALS*back to top mRNA from alignment at H-elongata_contig53486:3649..3783- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53486.12692.1 ID=mRNA_H-elongata_contig53486.12692.1|Name=mRNA_H-elongata_contig53486.12692.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig53486:3649..3783- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53486:3649..3783- >mRNA_H-elongata_contig53486.12692.1 ID=mRNA_H-elongata_contig53486.12692.1|Name=mRNA_H-elongata_contig53486.12692.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig53486:3649..3783- (Himanthalia elongata Himel1 dioecious)back to top |