mRNA_H-elongata_contig53482.12691.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53482.12691.1
Unique NamemRNA_H-elongata_contig53482.12691.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.080e-47
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNG-GEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVKV 306
            T +VDDGLSVE LP+G GE VWVHIADVSRWVPEGSPLY+E+R +RTT YLPEG+ PMFPAEVAHGVLSLR+G ECY+LSMGI LGE+GEITDV VTP+LVKV
Sbjct:  335 TNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARRKRTTIYLPEGAEPMFPAEVAHGVLSLRSGHECYSLSMGITLGESGEITDVIVTPALVKV 437          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.840e-30
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNG-GEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLR 210
            T +VDDGLSVE LP+G GE VWVHIADVSRWVPEGSPLY+E+R RRTT YLPEG+ PMFPAEVAHGVLSLR
Sbjct:  433 TNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARRRRTTIYLPEGAEPMFPAEVAHGVLSLR 503          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: K9RQP0_SYNP3 (Exoribonuclease R n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RQP0_SYNP3)

HSP 1 Score: 122 bits (307), Expect = 2.190e-30
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 303
            T+++DDG+S+ETLPNG E +W+HIAD SRW+  G  L QE+R R TT YLP G +PMFP E+A G +SL AGK C ALS GI L  +G I D ++ PSL+K
Sbjct:  284 TQEIDDGISLETLPNGQERLWIHIADPSRWLLLGDGLEQEARRRATTVYLPTGMIPMFPPELATGPMSLVAGKTCCALSFGIILQPDGSIADYQICPSLIK 384          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A251WEU1_9CYAN (RNB domain-containing ribonuclease n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WEU1_9CYAN)

HSP 1 Score: 114 bits (286), Expect = 1.600e-27
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVKV 306
            TR++DDGLSVE LP+G E VW+HIAD +RW+  G PL  E+R R TT YLP G + MFP E+A G +SL AG  C ALS G+ L  NG + D  +  S +K+
Sbjct:  282 TREIDDGLSVEYLPDGSERVWIHIADPTRWLLPGDPLDLEARRRSTTLYLPTGMISMFPTELATGPMSLNAGAVCCALSFGVLLDANGAVQDFNIHASHIKI 383          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A835Z4Y9_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.340e-27
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   22 LSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVKV 306
            +SVE LPNG E VWVHIADVSRWV +GS L Q++  R+TT YLPE SVPMFP ++A  VLSL AG+ C ALSMG+ L + G I D+ V  S + V
Sbjct:  439 VSVERLPNGRERVWVHIADVSRWVQQGSALDQDAARRQTTLYLPEQSVPMFPRDLAENVLSLTAGRPCPALSMGVILNDAGAIEDLTVVASTIVV 533          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A7T5E447_9CYAN (RNB domain-containing protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E447_9CYAN)

HSP 1 Score: 114 bits (284), Expect = 3.000e-27
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 303
            T+++DDGLS+ETL +G + +W+HIAD +RWV  G  L  E+R R TT YLP G +PMFPAE+A G +SL  G+ C ALS GI LGE G++ D  +  SL+K
Sbjct:  282 TQEIDDGLSLETLEDGRQRIWIHIADPTRWVIPGDDLDLEARRRCTTVYLPTGIIPMFPAELATGPMSLVQGQICCALSFGIVLGEAGDVQDYTIATSLIK 382          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: UPI0019DC012E (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019DC012E)

HSP 1 Score: 114 bits (284), Expect = 3.000e-27
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 303
            T+++DDGLS+ETL NG + +W+H+AD +RW+  G  L  E+R R TT YLP G +PMFP E+A G +SLR G+ C ALS G++L   G+I D  + PSL+K
Sbjct:  281 TQEIDDGLSLETLANGTQRLWIHVADPTRWLLPGDALDLEARRRCTTLYLPTGMIPMFPVELATGPMSLRQGEVCCALSFGVSLTAAGDIADYTICPSLIK 381          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: UPI001683B28D (ribonuclease R n=2 Tax=Leptolyngbya TaxID=47251 RepID=UPI001683B28D)

HSP 1 Score: 113 bits (283), Expect = 4.100e-27
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 303
            TR++DDG+SVE LP+G   +WVHIAD +RWV  G  L  E+R R TT YLP G +PMFP+E+A G +SL  G+ C ALS G+ L E G I +  + PSL+K
Sbjct:  288 TREIDDGVSVEFLPDGRHRLWVHIADPTRWVMPGDDLDLEARRRSTTVYLPTGMIPMFPSELATGPMSLNQGQVCTALSFGVILDEMGAIEEYEIHPSLIK 388          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: UPI0019FFB23C (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019FFB23C)

HSP 1 Score: 113 bits (282), Expect = 5.590e-27
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 303
            T+++DDG+S+ETL +G + +W+HIAD +RWV  G  L  E+R R TT YLP G VPMFP E+A G +SL  G+EC ALS G+ L E+G + +  +T SL+K
Sbjct:  282 TQEIDDGISLETLTDGRQRIWIHIADPTRWVLPGDALDLEARRRCTTLYLPTGMVPMFPLELAAGPMSLTQGRECCALSFGVVLSEDGAVEEYCITASLIK 382          
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Match: A0A6G3YVK1_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbya sp. SIO1D8 TaxID=2607807 RepID=A0A6G3YVK1_9CYAN)

HSP 1 Score: 113 bits (282), Expect = 5.600e-27
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYLPEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLVK 303
            TR++DDGLSVETL +G + +WVHIAD +RWV  G  L  E+R R TT YLP G VPMFP E+A G +SL  GK+C ALS G+ L E G I D  +  S VK
Sbjct:  281 TREIDDGLSVETLEDGRQRLWVHIADPTRWVLPGDDLDLEARRRCTTLYLPTGMVPMFPMELATGPMSLVQGKDCCALSFGVVLTEEGAIEDYSIAASRVK 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53482.12691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK7_ECTSI3.080e-4780.58COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWU3_9PHAE1.840e-3083.10RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
K9RQP0_SYNP32.190e-3057.43Exoribonuclease R n=1 Tax=Synechococcus sp. (strai... [more]
A0A251WEU1_9CYAN1.600e-2752.94RNB domain-containing ribonuclease n=2 Tax=unclass... [more]
A0A835Z4Y9_9STRA2.340e-2760.00RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7T5E447_9CYAN3.000e-2753.47RNB domain-containing protein n=3 Tax=Cyanobacteri... [more]
UPI0019DC012E3.000e-2751.49VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
UPI001683B28D4.100e-2753.47ribonuclease R n=2 Tax=Leptolyngbya TaxID=47251 Re... [more]
UPI0019FFB23C5.590e-2751.49VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]
A0A6G3YVK1_9CYAN5.600e-2756.44VacB/RNase II family 3'-5' exoribonuclease n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53482contigH-elongata_contig53482:2149..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue4.5e-41
Seed eggNOG ortholog2880.D8LLK7
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.5127523-CDS-H-elongata_contig53482:2148..23571622930871.5127523-CDS-H-elongata_contig53482:2148..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53482 2149..2357 +
1691679605.880991-CDS-H-elongata_contig53482:2148..23571691679605.880991-CDS-H-elongata_contig53482:2148..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53482 2149..2357 +
1622930871.5318007-CDS-H-elongata_contig53482:3030..31331622930871.5318007-CDS-H-elongata_contig53482:3030..3133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53482 3031..3133 +
1691679605.8954291-CDS-H-elongata_contig53482:3030..31331691679605.8954291-CDS-H-elongata_contig53482:3030..3133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53482 3031..3133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53482.12691.1prot_H-elongata_contig53482.12691.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53482 2149..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53482.12691.1

>prot_H-elongata_contig53482.12691.1 ID=prot_H-elongata_contig53482.12691.1|Name=mRNA_H-elongata_contig53482.12691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
TRKVDDGLSVETLPNGGEMVWVHIADVSRWVPEGSPLYQESRARRTTSYL
PEGSVPMFPAEVAHGVLSLRAGKECYALSMGIALGENGEITDVRVTPSLV
KVF*
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mRNA from alignment at H-elongata_contig53482:2149..3133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53482.12691.1 ID=mRNA_H-elongata_contig53482.12691.1|Name=mRNA_H-elongata_contig53482.12691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=985bp|location=Sequence derived from alignment at H-elongata_contig53482:2149..3133+ (Himanthalia elongata Himel1 dioecious)
ACAAGAAAGGTAGACGACGGCCTTAGCGTGGAAACCCTGCCCAACGGTGG GGAGATGGTCTGGGTACACATCGCAGACGTTTCTCGATGGGTGCCAGAGG GCAGCCCGCTCTACCAAGAGTCGAGGGCGAGGAGGACCACCTCCTACCTT CCGGAGGGGTCGGTGCCGATGTTCCCGGCGGAGGTGGCTCATGGGGTCTT ATCGTTGCGGTGATGAGAAGGAGGCGGGATGATGGGGGAGGAGGAGGAGG GGGGGGCGTTGATTTAAAAAATATATATCCCTATGTGTGATGCTGTTATC TTATTGACAGTGGCCGCCAGCCGTGGTCTACGCTGGCCCTCTCCCGTGGA CGACAGACTAGTCGAGCGCAACATTGGCGCATGGTGTATGTTCTTACTGG TGTCTAGTTTGAGGGAGAGGATATGCCACCCCGAAGACGCCTCGCAGTGA AATGGTGACGATTTAGTGTACCTTAGAGGAGGGTAAGGGAAGAGATGGAC GATCTGATCTACCCCTGTTCACGGAAAAATGTCTCTGCAGTACGCGCTTC CGTGTTACGTCGATCTGACGGGGAGGGAGCTACAATAGGCACACGTTGTG CTACGCACTTGCATTGAGTTAAGGCTAGAGCTGTGCCTCCGTGTGCTCGG GCCAAGTTTGTAATTTGTCGCAACTCGCTGGATGTAAAGTAATACGCCCC CCCCACCACCACGATACTGGGAGTTCCAGGAGATATCATCGCTCGCGTGT ATGGTGGAATGTGGCAGCTCTCCCCTACCTCGCCTTCCGCCTCCCCTCTC CCCTCCCCGCCCCGCCCCGCCCCTTCGCGAGGCGTTTTCTCTGACGCTTG GATGAACGACCTACACTGCCTTCTGATTTCAGCGCTGGTAAGGAGTGCTA CGCTCTGAGCATGGGGATCGCTCTGGGAGAAAACGGGGAAATTACAGACG TCAGGGTGACTCCTTCTCTCGTCAAGGTATTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig53482:2149..3133+

>mRNA_H-elongata_contig53482.12691.1 ID=mRNA_H-elongata_contig53482.12691.1|Name=mRNA_H-elongata_contig53482.12691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig53482:2149..3133+ (Himanthalia elongata Himel1 dioecious)
ACAAGAAAGGTAGACGACGGCCTTAGCGTGGAAACCCTGCCCAACGGTGG
GGAGATGGTCTGGGTACACATCGCAGACGTTTCTCGATGGGTGCCAGAGG
GCAGCCCGCTCTACCAAGAGTCGAGGGCGAGGAGGACCACCTCCTACCTT
CCGGAGGGGTCGGTGCCGATGTTCCCGGCGGAGGTGGCTCATGGGGTCTT
ATCGTTGCGACAAGAAAGGTAGACGACGGCCTTAGCGTGGAAACCCTGCC
CAACGGTGGGGAGATGGTCTGGGTACACATCGCAGACGTTTCTCGATGGG
TGCCAGAGGGCAGCCCGCTCTACCAAGAGTCGAGGGCGAGGAGGACCACC
TCCTACCTTCCGGAGGGGTCGGTGCCGATGTTCCCGGCGGAGGTGGCTCA
TGGGGTCTTATCGTTGCGCGCTGGTAAGGAGTGCTACGCTCTGAGCATGG
GGATCGCTCTGGGAGAAAACGGGGAAATTACAGACGTCAGGGTGACTCCT
TCTCTCGTCAAGGTATTTTGACGCTGGTAAGGAGTGCTACGCTCTGAGCA
TGGGGATCGCTCTGGGAGAAAACGGGGAAATTACAGACGTCAGGGTGACT
CCTTCTCTCGTCAAGGTATTTTGA
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