mRNA_H-elongata_contig5346.12688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5346.12688.1
Unique NamemRNA_H-elongata_contig5346.12688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.610e-17
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQI--IPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
            +DGGDCC C+C      C R  F C+DP A +     CE    +  PC  D ++ W+VE++TQ +ALA AVNCS G FEVEWRG +++
Sbjct:   89 YDGGDCCVCSCQ--GVNCMRTSFECLDPSANEE-LHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVV 173          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.310e-16
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
            +DGGDCC C+C      C    F C+DP A +     CE   P   PC  D ++ W+VE++ Q +ALA AVNCS G FEVEWRG +++
Sbjct:  148 YDGGDCCVCSCQ--GVNCMTTSFECLDPSASEE-LHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVV 232          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.840e-16
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 WDGGDCCRCTCDDDKYIC-GREGFLCIDPEAVDNGTTTCEQIIPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
            +DGGDCC C+C   +++C GR  F C+DP      TT C     + C  D  R+W+VENT     LA A+NC+ G F+VEWRGS+++
Sbjct:   72 YDGGDCCECSCQPGQFMCLGR--FDCLDPSF---NTTECVTNTTA-CAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLV 152          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.490e-15
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 WDGGDCCRCTCDDDKYIC-GREGFLCIDPEAVDNGTTTCEQIIPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIML 258
            +DGGDCC C+C   +Y+C GR  F C+DP      TT C     + C  D  R+W+VE+T     LA A+NC+ G F+VEWRGS+++
Sbjct:  178 YDGGDCCECSCQPAQYMCLGR--FDCLDPSF---NTTECVTNTTA-CSPDLSREWLVEDTADAIELANAINCTGGTFDVEWRGSVIV 258          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.810e-15
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 WDGGD----------CCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDT 264
            +DGGD          CC CTC     +C    F C+DP+A D+    CE   P+  PC  + ++ W+V+++ Q +ALA AVNCS G FEVEWRG++++++
Sbjct:   90 YDGGDVSLVACSSLLCCYCTCS--GALCQSVTFDCLDPDA-DDEFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVES 186          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 5.580e-13
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1
Query:    1 WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
            +DGGDCC C+C     +CG     C+DP A D     C    P   PC  + ++ W+V+   +  ALA AVNCS G FEVEW G+++++  I
Sbjct:  250 YDGGDCCICSCS--GTLCGGLAD-CLDPSAGDE-FYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPI 337          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.110e-10
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   52 CGREGFLCIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
            C    F C+DP +  NG   C++  P+  PC  + ++ W+V ++ +  ALA AVNCS G FEVEWRGS+++++ I
Sbjct:   10 CYSSLFDCLDPGSS-NGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPI 83          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.930e-10
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   25 CTCDDDKYICGREG-----FLCIDPEAVDNGTTTCEQ--IIPSPCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
            C  +++   CG +G       C+DP A +     CE   I  +PCP D +  W+V ++ Q  ALA AVNCS G FEVEW G+++++  I
Sbjct:  174 CNPENNIASCGYDGGDGGELDCVDPSAPEE-LYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETI 261          
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.200e-8
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   73 CIDPEAVDNGTTTCEQIIPS--PCPTDGKRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEI 270
            C+DP A D     C Q  P   PC  + ++ W+++   Q  ALA AVNCS G F+VEWRG+++++  I
Sbjct:   31 CLDPSAGDE-FYECSQPSPEALPCSLEVQQTWVLDEQEQAHALAAAVNCSGGSFQVEWRGTVVMEIPI 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5346.12688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G2X5_ECTSI2.610e-1746.59Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE2.310e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP6_9PHAE5.840e-1644.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI1.490e-1544.83Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K0E9_9PHAE3.810e-1540.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTI5_ECTSI5.580e-1340.22Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FTL7_ECTSI1.110e-1041.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSC0_ECTSI9.930e-1038.20Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K1P8_9PHAE1.200e-841.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5346contigH-elongata_contig5346:2702..2975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.2e-20
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.262417-CDS-H-elongata_contig5346:2701..29741622930871.262417-CDS-H-elongata_contig5346:2701..2974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5346 2702..2974 +
1691679605.7554245-CDS-H-elongata_contig5346:2701..29741691679605.7554245-CDS-H-elongata_contig5346:2701..2974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5346 2702..2974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5346.12688.1prot_H-elongata_contig5346.12688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5346 2702..2974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5346.12688.1

>prot_H-elongata_contig5346.12688.1 ID=prot_H-elongata_contig5346.12688.1|Name=mRNA_H-elongata_contig5346.12688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
WDGGDCCRCTCDDDKYICGREGFLCIDPEAVDNGTTTCEQIIPSPCPTDG
KRKWIVENTTQVRALAEAVNCSDGRFEVEWRGSIMLDTEIT
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mRNA from alignment at H-elongata_contig5346:2702..2975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5346.12688.1 ID=mRNA_H-elongata_contig5346.12688.1|Name=mRNA_H-elongata_contig5346.12688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=274bp|location=Sequence derived from alignment at H-elongata_contig5346:2702..2975+ (Himanthalia elongata Himel1 dioecious)
TGGGATGGAGGGGATTGCTGCAGATGCACATGTGACGACGACAAATATAT CTGCGGTAGAGAGGGCTTCTTGTGCATCGATCCTGAGGCAGTCGATAATG GCACGACTACATGCGAACAGATCATACCGTCCCCTTGCCCGACGGACGGT AAGAGAAAATGGATCGTGGAAAATACTACGCAGGTGCGAGCCTTGGCAGA AGCTGTGAATTGTTCAGATGGGAGATTCGAAGTGGAATGGAGAGGCAGTA TTATGTTGGACACAGAGATCACGG
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Coding sequence (CDS) from alignment at H-elongata_contig5346:2702..2975+

>mRNA_H-elongata_contig5346.12688.1 ID=mRNA_H-elongata_contig5346.12688.1|Name=mRNA_H-elongata_contig5346.12688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig5346:2702..2975+ (Himanthalia elongata Himel1 dioecious)
TGGGATGGAGGGGATTGCTGCAGATGCACATGTGACGACGACAAATATAT
CTGCGGTAGAGAGGGCTTCTTGTGCATCGATCCTGAGGCAGTCGATAATG
GCACGACTACATGCGAACAGATCATACCGTCCCCTTGCCCGACGGACGGT
AAGAGAAAATGGATCGTGGAAAATACTACGCAGGTGCGAGCCTTGGCAGA
AGCTGTGAATTGTTCAGATGGGAGATTCGAAGTGGAATGGAGAGGCAGTA
TTATGTTGGACACAGAGATCACGTGGGATGGAGGGGATTGCTGCAGATGC
ACATGTGACGACGACAAATATATCTGCGGTAGAGAGGGCTTCTTGTGCAT
CGATCCTGAGGCAGTCGATAATGGCACGACTACATGCGAACAGATCATAC
CGTCCCCTTGCCCGACGGACGGTAAGAGAAAATGGATCGTGGAAAATACT
ACGCAGGTGCGAGCCTTGGCAGAAGCTGTGAATTGTTCAGATGGGAGATT
CGAAGTGGAATGGAGAGGCAGTATTATGTTGGACACAGAGATCACG
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