mRNA_H-elongata_contig53426.12683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53426.12683.1
Unique NamemRNA_H-elongata_contig53426.12683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: A0A8B8G1F8_9HEMI (zinc finger BED domain-containing protein 1-like n=4 Tax=Aphididae TaxID=27482 RepID=A0A8B8G1F8_9HEMI)

HSP 1 Score: 79.7 bits (195), Expect = 1.480e-16
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   13 LRTYVASIDPRPSPVIISADE-----LKRQNILW-----GASMAEFELSRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            +R++V  +    +P I + ++     LK  N+L        +      ++F    S    R   N L+WW  R +++P + ++A  YLA+P+TS SSER FS AGNIVT KR+ L PENV+ LVFL+
Sbjct:   12 IRSHVLQLIESVAPTITNPNDTEENDLKMNNVLAIIYKDHTNSTNDAFTQFTEYLSEPKLRFDLNPLEWWRTREEKYPAIATIAKKYLAIPSTSASSERCFSTAGNIVTPKRSCLLPENVDMLVFLY 138          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89)

HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  127 SRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            S+F A  S    R   + L+WW  R D+ P L  +A  YL++P TS S+ER FS AGNIVT KRN LSPENVN LVFL+
Sbjct:  191 SQFQAYLSEPQLRVDLDYLEWWKTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFLY 269          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: A0A8B7EA18_HYDVU (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7EA18_HYDVU)

HSP 1 Score: 75.9 bits (185), Expect = 5.630e-15
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  100 GASMAEFELSRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            G S  E EL  +      +   S+T+ +KWW A     P L+ VA  YLA+P TS SSERVFSAAG++VT  R  L+P+NV  +V+LH
Sbjct:   11 GKSNIEIELDTYKGLP--RPDSSNTDIIKWWEAHAKRIPLLFQVARKYLAIPLTSASSERVFSAAGSVVTDSRLKLNPQNVGKIVYLH 96          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 74.3 bits (181), Expect = 5.930e-15
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  154 KHTR-SSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            +HT   STN L+WW +     P+L S+A  YL VP TS  SER+FS+AGNIV+KKR  LSPE+++ L F H
Sbjct:   24 EHTSPKSTNPLQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTFFH 94          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: UPI001C9A9669 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A9669)

HSP 1 Score: 79.3 bits (194), Expect = 7.680e-15
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  163 RSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFL 360
            R   N  +WW AR +++P +  VA  YL +P TS  SER FS AGNIVTKKRN L PENVN LVFL
Sbjct:  410 RFDLNPFEWWKARTNKYPAISEVAKKYLTIPATSAMSERCFSCAGNIVTKKRNRLLPENVNTLVFL 475          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: A0A3L8E0S8_OOCBI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8E0S8_OOCBI)

HSP 1 Score: 78.2 bits (191), Expect = 1.580e-14
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  127 SRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFL 360
            S+  A  +    R   + L+WW  R D+ P L  +A  YL +P TS S+ER FS AGNIVT KRN LSPENVN LVFL
Sbjct:  304 SQLQAYLTEPQLRFDLDHLEWWKTRADKFPALAILAKKYLCIPATSASAERTFSTAGNIVTSKRNCLSPENVNMLVFL 381          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: UPI000B937505 (zinc finger BED domain-containing protein 1-like n=2 Tax=Aphidinae TaxID=133076 RepID=UPI000B937505)

HSP 1 Score: 74.3 bits (181), Expect = 2.080e-14
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  121 ELSRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            +   + AE  ++ T    +  +WW  R  ++P +  +A  YL +P TS SSER FS AGNIVT+KR  LSPENVN LVFLH
Sbjct:   43 QFENYIAEPQLRFT---LDPKEWWKTRFSKYPVIGDLAKKYLTIPATSVSSERCFSTAGNIVTRKRASLSPENVNMLVFLH 120          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-14
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  181 LKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            LKWW A  + +P + ++  VYLA+  +S SSERVFS AGNIVT KRN LS ENVN L+FL+
Sbjct:    3 LKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFLN 63          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: A0A1A7XRV2_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XRV2_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 3.110e-14
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   76 LKRQNILWGASMAEFELSRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            +K+      A  AE E+ R+  E        + N L WW +   E+P L  +A  YL VP TS +SERVFS AG+IVT KR+ LSP++VN L+FLH
Sbjct:   85 IKKHGQKTPAMRAEDEIQRYRVENPAG---LNENPLTWWRSNEREYPLLARLAKQYLCVPGTSIASERVFSTAGDIVTAKRSCLSPDHVNELLFLH 177          
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Match: A0A0F8B6K5_LARCR (Zinc finger BED domain-containing protein 1 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8B6K5_LARCR)

HSP 1 Score: 72.4 bits (176), Expect = 6.630e-14
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  100 GASMAEFELSRFDAEQSIKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGNIVTKKRNMLSPENVNNLVFLH 363
            G+ M   E+  +  EQ I   +S    L+WW       PTL  +A  YL+VP TS  SE VFSAAGNIVTKKR  LS E+V+ L FLH
Sbjct:   39 GSEMVRNEVLMYFGEQCIARDKSP---LQWWKENAARFPTLAILAKSYLSVPATSTPSEHVFSAAGNIVTKKRASLSREHVDMLTFLH 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53426.12683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B8G1F8_9HEMI1.480e-1637.01zinc finger BED domain-containing protein 1-like n... [more]
UPI0005F55F891.660e-1654.43zinc finger BED domain-containing protein 1-like n... [more]
A0A8B7EA18_HYDVU5.630e-1546.59zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A1A7ZCN3_NOTFU5.930e-1553.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI001C9A96697.680e-1559.09E3 SUMO-protein ligase ZBED1-like n=2 Tax=Colletes... [more]
A0A3L8E0S8_OOCBI1.580e-1452.56Dimer_Tnp_hAT domain-containing protein n=3 Tax=Oo... [more]
UPI000B9375052.080e-1448.15zinc finger BED domain-containing protein 1-like n... [more]
E2BS40_HARSA2.310e-1459.02Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A1A7XRV2_9TELE3.110e-1444.79Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A0F8B6K5_LARCR6.630e-1448.86Zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53426contigH-elongata_contig53426:1567..1929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.4
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog400682.PAC_15719309
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39RW9@33154,3BH13@33208,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.8734589-CDS-H-elongata_contig53426:1566..19291622930870.8734589-CDS-H-elongata_contig53426:1566..1929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53426 1567..1929 +
1691679605.5792546-CDS-H-elongata_contig53426:1566..19291691679605.5792546-CDS-H-elongata_contig53426:1566..1929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53426 1567..1929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53426.12683.1prot_H-elongata_contig53426.12683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53426 1567..1929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53426.12683.1

>prot_H-elongata_contig53426.12683.1 ID=prot_H-elongata_contig53426.12683.1|Name=mRNA_H-elongata_contig53426.12683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
LIDILRTYVASIDPRPSPVIISADELKRQNILWGASMAEFELSRFDAEQS
IKHTRSSTNALKWWLARRDEHPTLYSVACVYLAVPTTSGSSERVFSAAGN
IVTKKRNMLSPENVNNLVFLH
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mRNA from alignment at H-elongata_contig53426:1567..1929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53426.12683.1 ID=mRNA_H-elongata_contig53426.12683.1|Name=mRNA_H-elongata_contig53426.12683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig53426:1567..1929+ (Himanthalia elongata Himel1 dioecious)
TTGATAGATATTTTACGGACCTATGTTGCCTCGATTGATCCCCGGCCTTC ACCCGTAATAATTTCGGCAGACGAACTCAAGAGACAGAATATCTTGTGGG GGGCTTCGATGGCGGAGTTTGAGCTATCTAGATTTGACGCCGAGCAGTCA ATAAAACACACCAGAAGCTCGACCAATGCGCTGAAGTGGTGGTTGGCGCG CCGCGATGAGCACCCAACTTTGTACAGCGTCGCGTGTGTATATCTCGCAG TGCCGACAACATCCGGAAGCTCTGAGCGTGTGTTCTCTGCCGCGGGTAAC ATCGTAACAAAGAAGCGCAACATGCTTTCACCCGAGAATGTCAACAACTT GGTGTTCCTTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig53426:1567..1929+

>mRNA_H-elongata_contig53426.12683.1 ID=mRNA_H-elongata_contig53426.12683.1|Name=mRNA_H-elongata_contig53426.12683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig53426:1567..1929+ (Himanthalia elongata Himel1 dioecious)
TTGATAGATATTTTACGGACCTATGTTGCCTCGATTGATCCCCGGCCTTC
ACCCGTAATAATTTCGGCAGACGAACTCAAGAGACAGAATATCTTGTGGG
GGGCTTCGATGGCGGAGTTTGAGCTATCTAGATTTGACGCCGAGCAGTCA
ATAAAACACACCAGAAGCTCGACCAATGCGCTGAAGTGGTGGTTGGCGCG
CCGCGATGAGCACCCAACTTTGTACAGCGTCGCGTGTGTATATCTCGCAG
TGCCGACAACATCCGGAAGCTCTGAGCGTGTGTTCTCTGCCGCGGGTAAC
ATCGTAACAAAGAAGCGCAACATGCTTTCACCCGAGAATGTCAACAACTT
GGTGTTCCTTCACTTGATAGATATTTTACGGACCTATGTTGCCTCGATTG
ATCCCCGGCCTTCACCCGTAATAATTTCGGCAGACGAACTCAAGAGACAG
AATATCTTGTGGGGGGCTTCGATGGCGGAGTTTGAGCTATCTAGATTTGA
CGCCGAGCAGTCAATAAAACACACCAGAAGCTCGACCAATGCGCTGAAGT
GGTGGTTGGCGCGCCGCGATGAGCACCCAACTTTGTACAGCGTCGCGTGT
GTATATCTCGCAGTGCCGACAACATCCGGAAGCTCTGAGCGTGTGTTCTC
TGCCGCGGGTAACATCGTAACAAAGAAGCGCAACATGCTTTCACCCGAGA
ATGTCAACAACTTGGTGTTCCTTCAC
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