mRNA_H-elongata_contig53422.12682.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 7.880e-16 Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 3
Query: 444 FKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIKA 683
+GA SGVRVN+++PG +T ++G E AV +I R I PEEIA +VIFLAS+DAAM TG+ Y MDGG+ IKA
Sbjct: 177 IEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 1.080e-14 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query: 444 FKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIKA 683
+GA SGVRVN++APG +T +FG + A ++ R PEEIAK+VIFLAS+DA M TG+ Y MDGG+ +KA
Sbjct: 179 IEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: A0A378U1R5_MYROD (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=6 Tax=Myroides TaxID=76831 RepID=A0A378U1R5_MYROD) HSP 1 Score: 75.9 bits (185), Expect = 1.510e-12 Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 390 NPKLLV*RHNNVSRCTD-GFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIK 680
+P + +H V G++ G+RVNA+ PGF +T + T P++K ++ +H +QRL TPEE+A+++ +LASD A+ ATG Y ++GG+ K
Sbjct: 150 SPAYVAAKHGVVGLTKSAGWEYGTQGIRVNAVGPGFIETPLLSTMDPKVKH-FLESQHAMQRLGTPEEVAEIIAWLASDKASFATGGYYPIEGGYLAK 246
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI00189E83B3 (glucose 1-dehydrogenase n=1 Tax=Paenibacillus sp. 1001270B_150601_E10 TaxID=2787079 RepID=UPI00189E83B3) HSP 1 Score: 75.5 bits (184), Expect = 2.110e-12 Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query: 435 TDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
T G A G+RVNA+ PG+ DT + +PE K++++ H + RL PEE+AK V+FLASDDA+ TGT +DGG+
Sbjct: 167 TLGIDYAKEGIRVNAVCPGYIDTPLIAAASPEHKQSLINL-HPMGRLGRPEEVAKAVLFLASDDASFVTGTTLLVDGGY 244
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: A0A6G2K3H4_9ACTN (SDR family oxidoreductase n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K3H4_9ACTN) HSP 1 Score: 74.7 bits (182), Expect = 5.540e-12 Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query: 459 SGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGFGIKA 683
+GVRVNA+APG+ T MF T P ++ ++ + H ++R+ TPEE+A +V FL S DAA +GTV +DGG +A
Sbjct: 193 AGVRVNAVAPGYIRTDMFETSHPPERQVLLGRSHALERVGTPEEVAGVVSFLCSRDAAFVSGTVISVDGGLHARA 267
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI001B06ABCE (SDR family oxidoreductase n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001B06ABCE) HSP 1 Score: 73.9 bits (180), Expect = 7.510e-12 Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query: 435 TDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
T G + A G+RVNA+ PG+ +T + PE K+ +V H I RL TPEE+AK V+FLASDDA+ TG +DGG+
Sbjct: 167 TLGIQYASRGIRVNAVCPGYIETPLLKVLPPEEKQKLVDL-HPIGRLGTPEEVAKAVLFLASDDASFVTGASLLVDGGY 244
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI000415A541 (glucose 1-dehydrogenase n=1 Tax=Fictibacillus gelatini TaxID=225985 RepID=UPI000415A541) HSP 1 Score: 73.6 bits (179), Expect = 1.030e-11 Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query: 453 ADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
A G+RVNA+ PG+ DT + PEMK+ +V H + RL PEE+AK V+FLASDDA+ TGT +DGG+
Sbjct: 173 AKEGIRVNAVCPGYIDTPLIAGADPEMKQQLVDL-HPLGRLGKPEEVAKAVLFLASDDASFITGTSLLIDGGY 244
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: UPI001E3825F5 (SDR family oxidoreductase n=1 Tax=Brevibacterium sp. HY170 TaxID=2898795 RepID=UPI001E3825F5) HSP 1 Score: 73.6 bits (179), Expect = 1.120e-11 Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 3
Query: 420 NVSRCTDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
N+ R T G AD G+RVNA+APG+ DT + + +++ +V+K I RL TPEE+A++V FLASD A+ TG + +DGG+
Sbjct: 169 NLVRST-GLTYADQGIRVNAVAPGYVDTPLVASLDERVRDTMVEKMP-IGRLGTPEEVAEVVCFLASDAASFVTGATWSVDGGY 250
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: E5WGB5_9BACI (Uncharacterized protein n=3 Tax=Bacillaceae TaxID=186817 RepID=E5WGB5_9BACI) HSP 1 Score: 73.2 bits (178), Expect = 1.410e-11 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 3
Query: 420 NVSRCTDGFKGADSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
N++R T G A G+RVNA+ PG+ DT + +PE KE +++ H I RL PEEIAK ++FLASDD++ G +DGGF
Sbjct: 163 NLTR-TLGVTYASKGIRVNAVCPGYIDTDLIRNKSPEAKEELIRL-HPIGRLGQPEEIAKAILFLASDDSSFVCGANLMVDGGF 244
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Match: A0A2D4WLT5_9ALTE (Uncharacterized protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2D4WLT5_9ALTE) HSP 1 Score: 68.9 bits (167), Expect = 1.480e-11 Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 3
Query: 456 DSGVRVNAIAPGFTDTGMFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQMDGGF 671
DSG+R+NAI PGF +T + PE A + H + RL TPE++AK ++LASD ++ TG ++ +DGG+
Sbjct: 5 DSGIRINAICPGFIETPLLRESVPEEDRAHLASRHPMNRLGTPEDVAKAAMWLASDASSFVTGMLFSVDGGW 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53422.12682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53422.12682.1 >prot_H-elongata_contig53422.12682.1 ID=prot_H-elongata_contig53422.12682.1|Name=mRNA_H-elongata_contig53422.12682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp MFGTFTPEMKEAVVKKEHVIQRLITPEEIAKLVIFLASDDAAMATGTVYQback to top mRNA from alignment at H-elongata_contig53422:2..1030- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53422.12682.1 ID=mRNA_H-elongata_contig53422.12682.1|Name=mRNA_H-elongata_contig53422.12682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig53422:2..1030- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53422:2..1030- >mRNA_H-elongata_contig53422.12682.1 ID=mRNA_H-elongata_contig53422.12682.1|Name=mRNA_H-elongata_contig53422.12682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig53422:2..1030- (Himanthalia elongata Himel1 dioecious)back to top |