prot_H-elongata_contig53349.12677.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig53349.12677.1
Unique Name	prot_H-elongata_contig53349.12677.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	262

Homology

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BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 6.960e-50
Identity = 122/386 (31.61%), Postives = 172/386 (44.56%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA--------------------------------------------------------------------------------------LDGEQFFA----------SRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPSTLSS---------------------------ESKMGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGH 260
            +N +++D LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE  G EF+  C N+ I +E  ATNTP+Q G+SERDGQTLA                                                                                      LD + ++           SR + +    P    F   +         +R  S L S                             +M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH
Sbjct:  393 LNARSLDTLRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSALGGATPYSKLHNQSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYWVLNPSNRAVVESRNVTFIEFPPRSVPFQYSTEANGYESDVLRFTSLLDSPHSTSDLDFTPQNELLRQEREIWKGACSKEMNNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGH 778

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BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 8.070e-49
Identity = 86/162 (53.09%), Postives = 116/162 (71.60%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATKSGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTL 162
            +N ++M LLR+KE   V+++ +++ CDIC ++KS Q  HPK T+R+TT PM LVYTD++G  TP  K G+ Y   F D +SR+KEI+LL++K ET  +LH YNM V  PL   IE IRCD+G E    EF T C+++GI +E  ATNTP+QNG+SERDGQTL
Sbjct:  116 LNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTL 277

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BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.740e-48
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G+SE DGQTLA
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLA 217

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BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.960e-48
Identity = 86/162 (53.09%), Postives = 116/162 (71.60%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATKSGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTL 162
            +N ++M+LLR+KE  GV+++ +++ CDIC ++KSRQ  HP+ T R+TT PM+LVYTD +G  TP  K G+ Y  KFTD +S MKEI+LL++  ET  +LH YNM V  PL  RIE IRC+ GGE    EF    +++ I +E  ATNTP+QNG+SERDGQTL
Sbjct:  318 LNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTL 479

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BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.740e-46
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G+SERDGQTLA
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLA 217

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BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.300e-45
Identity = 81/166 (48.80%), Postives = 113/166 (68.07%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G SERDGQTLA
Sbjct:  428 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLA 593

[Close]

BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.380e-45
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G+SERDGQTLA
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLA 217

[Close]

BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.700e-45
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G+SERDGQTLA
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLA 217

[Close]

BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.800e-45
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G+SERDGQTLA
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLA 217

[Close]

BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.130e-44
Identity = 81/166 (48.80%), Postives = 113/166 (68.07%), Query Frame = 0

Query:    1 MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA 163
            +N +++D+LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE TG EF+  C N+ I +E  ATNTP+Q G SERDGQTLA
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLA 217

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot

BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J8P7_9PHAE	6.960e-50	31.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT61_9PHAE	8.070e-49	53.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KZ34_9PHAE	1.740e-48	48.19	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JYD3_9PHAE	2.960e-48	53.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCM0_9PHAE	4.740e-46	48.80	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KT84_9PHAE	2.300e-45	48.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K500_9PHAE	2.380e-45	48.80	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	4.700e-45	48.80	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	4.800e-45	48.80	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	1.130e-44	48.80	Integrase catalytic domain-containing protein (Fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 48..162 e-value: 4.6E-16 score: 59.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 46..212 score: 15.341
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 40..166 e-value: 7.4E-19 score: 69.7
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 23..158
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 23..158
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 46..162

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig53349	contig	H-elongata_contig53349:2263..3071 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig53349.12677.1	mRNA_H-elongata_contig53349.12677.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig53349 2245..3470 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig53349.12677.1 ID=prot_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKP
MELVYTDLIGHITPATKSGYKYTIKFTDDFSRMKEIFLLRSKMETTESLH
QYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPK
QNGMSERDGQTLALDGEQFFASRALAYTAGAPTHKGFSEKSNTISKSRTA
IRMPSTLSSESKMGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGR
FKARLVVQGHV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf