mRNA_H-elongata_contig53349.12677.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53349.12677.1
Unique NamemRNA_H-elongata_contig53349.12677.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.120e-95
Identity = 191/527 (36.24%), Postives = 265/527 (50.28%), Query Frame = 1
Query:    1 HKRLGHMNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA--------------------------------------------------------------------------------------LDGEQFFA----------SRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPSTLSS---------------------------ESKMGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            H+RLGH+N +++D LR+  GTGV+Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  D +G + P  K     + Y  K TDD+++MKE++LLR K +TTE++H YNM V      RIE IRCDKGGE  G EF+  C N+ I +E  ATNTP+Q G+SERDGQTLA                                                                                      LD + ++           SR + +    P    F   +         +R  S L S                             +M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT D  L V G+T TQ     YT  SG+ +VILT+YV+ + + G
Sbjct:  387 HRRLGHLNARSLDTLRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSALGGATPYSKLHNQSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYWVLNPSNRAVVESRNVTFIEFPPRSVPFQYSTEANGYESDVLRFTSLLDSPHSTSDLDFTPQNELLRQEREIWKGACSKEMNNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWTRTQ-----YT--SGNIIVILTVYVDXLDVVG 906          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 4.870e-94
Identity = 199/550 (36.18%), Postives = 267/550 (48.55%), Query Frame = 1
Query:    1 HKRLGHMNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATKSGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA-----------------------------------------------------------------------------------LDGEQFFASRALAYTA---GAPTHKGFSEKSNTIS------------------KSRTAIRM--------------PSTLSSESKMGS-------------------------------LKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            H+RLGH+N ++M LLR+KE   V+++ +++ CDIC ++KS Q  HPK T+R+TT PM LVYTD++G  TP  K G+ Y   F D +SR+KEI+LL++K ET  +LH YNM V  PL   IE IRCD+G E    EF T C+++GI +E  ATNTP+QNG+SERDGQTL                                                                                    LD + F+ S  L +T+      T +   + S T+                   +    IR+              PS  SS   +G                                L + +V+K VPI+SVPK   I+G+  VFKQ+ + +FK RLVVQGHV E+GID+G  YAP+                       ++ V FLQS I K ++VKP PGQD K P T E +VYKL RS YG ++ PVLW+DT   VLVVIGF PT   PCV+ +GSG TLVILT+YV++IL++G
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTLTTITRCLMKNGAFPPTLCGELMMTAVYLSNRSPHSALGGVTPYFKMYRKEADLSRLRVIGARSFVESKKVTFIETPAYSMPPSVLDDDNFYESDVLNFTSVLGKVSTREDEFDGSGTLDTVDLETENQFLRQEICRMRHNDLIRVEIQRQAIDAGHDTPPSPPSSARILGGGAHQNPEHLKEAINSPQAPQWKAAIAKEMDRLAKQKVHKSVPITSVPKESKILGTRSVFKQQADRKFKVRLVVQGHVQESGIDFGRSYAPI-----------------------DIAVAFLQSAIHKDVWVKPAPGQDTKHPATGEIIVYKLERSHYGRSQSPVLWFDTMGDVLVVIGFRPTH--PCVFIYGSGGTLVILTLYVDDILISG 634          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 7.130e-78
Identity = 141/240 (58.75%), Postives = 167/240 (69.58%), Query Frame = 1
Query:  508 LDGEQFFASRALAYTAGAPTHKGFSEKSNTISKS----RTAIRMPSTLSSESKMG----SLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            LD E    SRA  Y  GAP  +GF E+ +   K     + AI  P T   +  +G    S  ++ V+KLVPI+SVPK E ++G+ FVFKQK + RFK RLVVQGHV E+GID G  YA VCRIGS+     IACE  +PVW+M+V V FLQ  IDK ++VKP PGQD KDP T   MVYKL RSLYGLA+ PVLWYDT D VLVVIGF PTQSDPCVY HGSGDTLVILT+YV +IL++G
Sbjct:  346 LDEESPPKSRAYVYATGAPIRQGFLEEEHRAIKIPNTFKEAINSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISG 585          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.360e-62
Identity = 116/243 (47.74%), Postives = 159/243 (65.43%), Query Frame = 1
Query:  517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            + F   RA AY      H G  E++N       AI++P+T    +SS  +          M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKA LVV GH  E G DYG  YAPVCRIGSI    TI C +++P+++++VVV FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT +  L V G+  TQ DPCVY + SG+ +VILT+YV++IL+TG
Sbjct:   48 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTCDEAMSSPQREEWKGECIKEMDNLRKHNVYNLVPLSSVPKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITG 284          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.470e-62
Identity = 101/183 (55.19%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  655 MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT D  L V G+  TQSDPCVY + SG+ +VILT+YV++IL+ G
Sbjct:    1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIG 183          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.400e-62
Identity = 115/243 (47.33%), Postives = 160/243 (65.84%), Query Frame = 1
Query:  517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            + F   RA AY      H G  E++N       AI++P+T    +SS  +          M ++++++VY LVP+SSV KGE I+G+ FVFK+K++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT D  L V G+  TQSDPCVY + SG+++VILT+YV++IL+TG
Sbjct:  155 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITG 391          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 7.870e-62
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 1
Query:  655 MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT D  L V G+  TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct:    1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 183          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.280e-61
Identity = 117/243 (48.15%), Postives = 159/243 (65.43%), Query Frame = 1
Query:  517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            + F   RA AY      H G  E++N       AI++P+T    +SS  +          M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT D  L V G+  TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct:  311 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 547          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.380e-60
Identity = 117/243 (48.15%), Postives = 159/243 (65.43%), Query Frame = 1
Query:  517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            + F   RA AY      H G  E++N       AI++P+T    +SS  +          M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E MVYKL RSLYGL++ P LW DT D  L V G+  TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct:  536 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 772          
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.450e-59
Identity = 113/243 (46.50%), Postives = 158/243 (65.02%), Query Frame = 1
Query:  517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
            + F   RA AY      H G  E++N       AI++P+T    +SS  +          M +L+++ VY LVP+SSVPKGE I+G+ F FK+ ++GRFKARLVV GH  E G DYG  YAPVCRIGSI     I C +++P+++++VV  FL +  D+ ++V+P PG   K+  T E M+Y+L RSLYGL+++P LW DT D  L V G+  TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct:  354 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFAFKRTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNYATGEPMMYELERSLYGLSQYPALWKDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 590          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8P7_9PHAE1.120e-9536.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE4.870e-9436.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9R3_9PHAE7.130e-7858.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDU8_9PHAE1.360e-6247.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K066_9PHAE1.470e-6255.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTY2_9PHAE2.400e-6247.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE7.870e-6255.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE2.280e-6148.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCT3_9PHAE1.380e-6048.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K7T8_9PHAE1.450e-5946.50Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53349contigH-elongata_contig53349:2245..3470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.1
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size1203
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53349.12677.1prot_H-elongata_contig53349.12677.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53349 2263..3071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.2064555-UTR-H-elongata_contig53349:2244..22621622930870.2064555-UTR-H-elongata_contig53349:2244..2262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53349 2245..2262 +
1691679605.2614408-UTR-H-elongata_contig53349:2244..22621691679605.2614408-UTR-H-elongata_contig53349:2244..2262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53349 2245..2262 +
1622930870.260877-UTR-H-elongata_contig53349:3071..34701622930870.260877-UTR-H-elongata_contig53349:3071..3470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53349 3072..3470 +
1691679605.2983437-UTR-H-elongata_contig53349:3071..34701691679605.2983437-UTR-H-elongata_contig53349:3071..3470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53349 3072..3470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.223651-CDS-H-elongata_contig53349:2262..28961622930870.223651-CDS-H-elongata_contig53349:2262..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53349 2263..2896 +
1691679605.2739875-CDS-H-elongata_contig53349:2262..28961691679605.2739875-CDS-H-elongata_contig53349:2262..2896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53349 2263..2896 +
1622930870.2416375-CDS-H-elongata_contig53349:2919..30711622930870.2416375-CDS-H-elongata_contig53349:2919..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53349 2920..3071 +
1691679605.2831378-CDS-H-elongata_contig53349:2919..30711691679605.2831378-CDS-H-elongata_contig53349:2919..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53349 2920..3071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53349.12677.1

>prot_H-elongata_contig53349.12677.1 ID=prot_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKP
MELVYTDLIGHITPATKSGYKYTIKFTDDFSRMKEIFLLRSKMETTESLH
QYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPK
QNGMSERDGQTLALDGEQFFASRALAYTAGAPTHKGFSEKSNTISKSRTA
IRMPSTLSSESKMGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGR
FKARLVVQGHV*
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mRNA from alignment at H-elongata_contig53349:2245..3470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53349.12677.1 ID=mRNA_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-elongata_contig53349:2245..3470+ (Himanthalia elongata Himel1 dioecious)
CACAAAAGACTAGGGCACATGAATCCCCAAAACATGGACCTACTGCGTCG AAAGGAAGGAACTGGCGTCAACTACACCGGTGCAGTGTCGGACTGCGACA TTTGCACCGTAACAAAGAGTAGACAACAAGTACACCCCAAGACGACAACA CGCAAGACAACCAAGCCGATGGAGCTGGTCTACACGGATCTCATAGGACA CATCACCCCTGCGACCAAGAGTGGGTACAAATACACCATCAAGTTCACCG ACGACTTCTCGCGCATGAAGGAGATCTTCCTCCTCAGGAGCAAGATGGAG ACCACCGAATCGCTACATCAGTACAACATGACGGTAGTCGTTCCGCTGGA ACTCCGTATCGAGAACATCCGATGCGACAAGGGCGGTGAGTACACTGGGA GGGAGTTCAAAACTCTATGCATCAACGCCGGGATCAACGTCGAGAACACG GCAACAAACACACCAAAACAAAATGGGATGTCCGAGAGGGACGGGCAGAC ACTAGCCTTGGATGGAGAACAATTTTTCGCTTCGAGGGCCTTAGCGTACA CCGCTGGCGCCCCAACCCACAAAGGGTTCTCAGAGAAGAGCAACACGATA TCAAAATCTCGAACAGCTATAAGAATGCCATCGACTCTCTCCAGCGAGAG CAGTGGACACAGTCAATTAGGAAAGAGATGGGCAGCCTGAAGCAAAACGA GGTCTACAAATTGGTTCCTATCTCCAGTGTCCCGAAAGGAGAAAATATCA TAGGCTCACATTTCGTGTTCAAGCAGAAGGTAAATGGACGTTTCAAGGCT CGGCTGGTCGTTCAAGGCCATGTGTAGGAAGCTGGCATTGACTACGGAAT AATCTATGCCCCAGTGTGCCGTATCGGCAGCATTTGGACTCTTCTTACCA TAGCGTGTGAGCACGACTTCCCTGTATGGAAGATGAACGTCGTGGTTACC TTCCTACAGTCCTACATCGACAAGAAAATCTTCGTGAAGCCTGTCCCGGG ACAAGACCCCAAGGACCCCCAGACTGACGAAGCCATGGTGTACAAACTCC GACGTAGTCTGTACGGACTCGCGGAGTTTCCTGTGCTATGGTACGACACT AATGACGGCGTACTAGTGGTCATCGGATTTACGCCCACGCAGTCGGACCC TTGCGTATACACTCATGGAAGCGGAGATACTCTCGTCATCCTGACCATCT ACGTCGAAAATATCTTGCTCACCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig53349:2245..3470+

>mRNA_H-elongata_contig53349.12677.1 ID=mRNA_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig53349:2245..3470+ (Himanthalia elongata Himel1 dioecious)
ATGAATCCCCAAAACATGGACCTACTGCGTCGAAAGGAAGGAACTGGCGT
CAACTACACCGGTGCAGTGTCGGACTGCGACATTTGCACCGTAACAAAGA
GTAGACAACAAGTACACCCCAAGACGACAACACGCAAGACAACCAAGCCG
ATGGAGCTGGTCTACACGGATCTCATAGGACACATCACCCCTGCGACCAA
GAGTGGGTACAAATACACCATCAAGTTCACCGACGACTTCTCGCGCATGA
AGGAGATCTTCCTCCTCAGGAGCAAGATGGAGACCACCGAATCGCTACAT
CAGTACAACATGACGGTAGTCGTTCCGCTGGAACTCCGTATCGAGAACAT
CCGATGCGACAAGGGCGGTGAGTACACTGGGAGGGAGTTCAAAACTCTAT
GCATCAACGCCGGGATCAACGTCGAGAACACGGCAACAAACACACCAAAA
CAAAATGGGATGTCCGAGAGGGACGGGCAGACACTAGCCTTGGATGGAGA
ACAATTTTTCGCTTCGAGGGCCTTAGCGTACACCGCTGGCGCCCCAACCC
ACAAAGGGTTCTCAGAGAAGAGCAACACGATATCAAAATCTCGAACAGCT
ATAAGAATGCCATCGACTCTCTCCAGCGAGAGCAATGAATCCCCAAAACA
TGGACCTACTGCGTCGAAAGGAAGGAACTGGCGTCAACTACACCGGTGCA
GTGTCGGACTGCGACATTTGCACCGTAACAAAGAGTAGACAACAAGTACA
CCCCAAGACGACAACACGCAAGACAACCAAGCCGATGGAGCTGGTCTACA
CGGATCTCATAGGACACATCACCCCTGCGACCAAGAGTGGGTACAAATAC
ACCATCAAGTTCACCGACGACTTCTCGCGCATGAAGGAGATCTTCCTCCT
CAGGAGCAAGATGGAGACCACCGAATCGCTACATCAGTACAACATGACGG
TAGTCGTTCCGCTGGAACTCCGTATCGAGAACATCCGATGCGACAAGGGC
GGTGAGTACACTGGGAGGGAGTTCAAAACTCTATGCATCAACGCCGGGAT
CAACGTCGAGAACACGGCAACAAACACACCAAAACAAAATGGGATGTCCG
AGAGGGACGGGCAGACACTAGCCTTGGATGGAGAACAATTTTTCGCTTCG
AGGGCCTTAGCGTACACCGCTGGCGCCCCAACCCACAAAGGGTTCTCAGA
GAAGAGCAACACGATATCAAAATCTCGAACAGCTATAAGAATGCCATCGA
CTCTCTCCAGCGAGAGCAAGATGGGCAGCCTGAAGCAAAACGAGGTCTAC
AAATTGGTTCCTATCTCCAGTGTCCCGAAAGGAGAAAATATCATAGGCTC
ACATTTCGTGTTCAAGCAGAAGGTAAATGGACGTTTCAAGGCTCGGCTGG
TCGTTCAAGGCCATGTGTAGAGATGGGCAGCCTGAAGCAAAACGAGGTCT
ACAAATTGGTTCCTATCTCCAGTGTCCCGAAAGGAGAAAATATCATAGGC
TCACATTTCGTGTTCAAGCAGAAGGTAAATGGACGTTTCAAGGCTCGGCT
GGTCGTTCAAGGCCATGTGTAG
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