mRNA_H-elongata_contig53349.12677.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE) HSP 1 Score: 318 bits (815), Expect = 1.120e-95 Identity = 191/527 (36.24%), Postives = 265/527 (50.28%), Query Frame = 1
Query: 1 HKRLGHMNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATK---SGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA--------------------------------------------------------------------------------------LDGEQFFA----------SRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPSTLSS---------------------------ESKMGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
H+RLGH+N +++D LR+ GTGV+Y ++S C +C + K +Q HPK +TR+ ++P +LV D +G + P K + Y K TDD+++MKE++LLR K +TTE++H YNM V RIE IRCDKGGE G EF+ C N+ I +E ATNTP+Q G+SERDGQTLA LD + ++ SR + + P F + +R S L S +M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT D L V G+T TQ YT SG+ +VILT+YV+ + + G
Sbjct: 387 HRRLGHLNARSLDTLRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSALGGATPYSKLHNQSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYWVLNPSNRAVVESRNVTFIEFPPRSVPFQYSTEANGYESDVLRFTSLLDSPHSTSDLDFTPQNELLRQEREIWKGACSKEMNNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWTRTQ-----YT--SGNIIVILTVYVDXLDVVG 906
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE) HSP 1 Score: 308 bits (788), Expect = 4.870e-94 Identity = 199/550 (36.18%), Postives = 267/550 (48.55%), Query Frame = 1
Query: 1 HKRLGHMNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPMELVYTDLIGHITPATKSGYKYTIKFTDDFSRMKEIFLLRSKMETTESLHQYNMTVVVPLELRIENIRCDKGGEYTGREFKTLCINAGINVENTATNTPKQNGMSERDGQTLA-----------------------------------------------------------------------------------LDGEQFFASRALAYTA---GAPTHKGFSEKSNTIS------------------KSRTAIRM--------------PSTLSSESKMGS-------------------------------LKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
H+RLGH+N ++M LLR+KE V+++ +++ CDIC ++KS Q HPK T+R+TT PM LVYTD++G TP K G+ Y F D +SR+KEI+LL++K ET +LH YNM V PL IE IRCD+G E EF T C+++GI +E ATNTP+QNG+SERDGQTL LD + F+ S L +T+ T + + S T+ + IR+ PS SS +G L + +V+K VPI+SVPK I+G+ VFKQ+ + +FK RLVVQGHV E+GID+G YAP+ ++ V FLQS I K ++VKP PGQD K P T E +VYKL RS YG ++ PVLW+DT VLVVIGF PT PCV+ +GSG TLVILT+YV++IL++G
Sbjct: 110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTLTTITRCLMKNGAFPPTLCGELMMTAVYLSNRSPHSALGGVTPYFKMYRKEADLSRLRVIGARSFVESKKVTFIETPAYSMPPSVLDDDNFYESDVLNFTSVLGKVSTREDEFDGSGTLDTVDLETENQFLRQEICRMRHNDLIRVEIQRQAIDAGHDTPPSPPSSARILGGGAHQNPEHLKEAINSPQAPQWKAAIAKEMDRLAKQKVHKSVPITSVPKESKILGTRSVFKQQADRKFKVRLVVQGHVQESGIDFGRSYAPI-----------------------DIAVAFLQSAIHKDVWVKPAPGQDTKHPATGEIIVYKLERSHYGRSQSPVLWFDTMGDVLVVIGFRPTH--PCVFIYGSGGTLVILTLYVDDILISG 634
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 266 bits (681), Expect = 7.130e-78 Identity = 141/240 (58.75%), Postives = 167/240 (69.58%), Query Frame = 1
Query: 508 LDGEQFFASRALAYTAGAPTHKGFSEKSNTISKS----RTAIRMPSTLSSESKMG----SLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
LD E SRA Y GAP +GF E+ + K + AI P T + +G S ++ V+KLVPI+SVPK E ++G+ FVFKQK + RFK RLVVQGHV E+GID G YA VCRIGS+ IACE +PVW+M+V V FLQ IDK ++VKP PGQD KDP T MVYKL RSLYGLA+ PVLWYDT D VLVVIGF PTQSDPCVY HGSGDTLVILT+YV +IL++G
Sbjct: 346 LDEESPPKSRAYVYATGAPIRQGFLEEEHRAIKIPNTFKEAINSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISG 585
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 219 bits (559), Expect = 1.360e-62 Identity = 116/243 (47.74%), Postives = 159/243 (65.43%), Query Frame = 1
Query: 517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
+ F RA AY H G E++N AI++P+T +SS + M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKA LVV GH E G DYG YAPVCRIGSI TI C +++P+++++VVV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT + L V G+ TQ DPCVY + SG+ +VILT+YV++IL+TG
Sbjct: 48 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTCDEAMSSPQREEWKGECIKEMDNLRKHNVYNLVPLSSVPKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITG 284
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE) HSP 1 Score: 214 bits (545), Expect = 1.470e-62 Identity = 101/183 (55.19%), Postives = 135/183 (73.77%), Query Frame = 1
Query: 655 MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT D L V G+ TQSDPCVY + SG+ +VILT+YV++IL+ G
Sbjct: 1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIG 183
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE) HSP 1 Score: 219 bits (557), Expect = 2.400e-62 Identity = 115/243 (47.33%), Postives = 160/243 (65.84%), Query Frame = 1
Query: 517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
+ F RA AY H G E++N AI++P+T +SS + M ++++++VY LVP+SSV KGE I+G+ FVFK+K++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT D L V G+ TQSDPCVY + SG+++VILT+YV++IL+TG
Sbjct: 155 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITG 391
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 216 bits (550), Expect = 7.870e-62 Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 1
Query: 655 MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT D L V G+ TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct: 1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 183
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 222 bits (565), Expect = 2.280e-61 Identity = 117/243 (48.15%), Postives = 159/243 (65.43%), Query Frame = 1
Query: 517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
+ F RA AY H G E++N AI++P+T +SS + M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT D L V G+ TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct: 311 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 547
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE) HSP 1 Score: 222 bits (565), Expect = 1.380e-60 Identity = 117/243 (48.15%), Postives = 159/243 (65.43%), Query Frame = 1
Query: 517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
+ F RA AY H G E++N AI++P+T +SS + M +L+++ VY LVP+SSVPKGE I+G+ FVFK+K++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E MVYKL RSLYGL++ P LW DT D L V G+ TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct: 536 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 772
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE) HSP 1 Score: 216 bits (551), Expect = 1.450e-59 Identity = 113/243 (46.50%), Postives = 158/243 (65.02%), Query Frame = 1
Query: 517 EQFFASRALAYTAGAPTHKGFSEKSNTISKSRTAIRMPST----LSSESK----------MGSLKQNEVYKLVPISSVPKGENIIGSHFVFKQKVNGRFKARLVVQGHV*EAGIDYGIIYAPVCRIGSIWTLLTIACEHDFPVWKMNVVVTFLQSYIDKKIFVKPVPGQDPKDPQTDEAMVYKLRRSLYGLAEFPVLWYDTNDGVLVVIGFTPTQSDPCVYTHGSGDTLVILTIYVENILLTG 1203
+ F RA AY H G E++N AI++P+T +SS + M +L+++ VY LVP+SSVPKGE I+G+ F FK+ ++GRFKARLVV GH E G DYG YAPVCRIGSI I C +++P+++++VV FL + D+ ++V+P PG K+ T E M+Y+L RSLYGL+++P LW DT D L V G+ TQSDPCVY + SG+ +VILT+YV++IL+TG
Sbjct: 354 DPFTVPRAHAYVTTTHEHHGILEETN------QAIKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFAFKRTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNYATGEPMMYELERSLYGLSQYPALWKDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 590 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53349.12677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53349.12677.1 >prot_H-elongata_contig53349.12677.1 ID=prot_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp MNPQNMDLLRRKEGTGVNYTGAVSDCDICTVTKSRQQVHPKTTTRKTTKPback to top mRNA from alignment at H-elongata_contig53349:2245..3470+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53349.12677.1 ID=mRNA_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-elongata_contig53349:2245..3470+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53349:2245..3470+ >mRNA_H-elongata_contig53349.12677.1 ID=mRNA_H-elongata_contig53349.12677.1|Name=mRNA_H-elongata_contig53349.12677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig53349:2245..3470+ (Himanthalia elongata Himel1 dioecious)back to top |