prot_H-elongata_contig5332.12672.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig5332.12672.1
Unique Name	prot_H-elongata_contig5332.12672.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	260

Homology

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BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot
Match: D8LEQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ4_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.050e-80
Identity = 163/271 (60.15%), Postives = 196/271 (72.32%), Query Frame = 0

Query:    3 RQLRRVRTEADAAGEATRKDIEKLRGLHAKRVRRLEALLKEETENLADARREIAICKSTLAGDAGEFQRWTEEQRYKSGKLLEELARIQQKKVNGAAAQEVTAREREGLAMSRLRKVMEGVELRRQLREALAELESNRSAQSRRARSDVQLQRAAEIARHEVAMLEAERSRWNEERRSMETALDKLARLVYGVRKTNDKTTATAPKGK---------ALNPASSTSAKNALNCSRRPARGAKSEG----GWEHVNESARVACSTIGVNVAR 260
            +QLR  + EA++AGEATRKDI+KLRGLHA+RV+RLEALLKEE +NLADARREIA CK+ +AGDA EFQRWTE  R +S KLL+ELA IQ KKV+ A A E  AREREGLAM RLRKVMEG E++RQLREALAELES+R+AQ+RRAR++++LQRAAEIA+ EVAM+E+ER+RW EERRSMETA+++L RLVYG       TTATAP G          A     ST  K  +    +P  G  S G    G      + R  CS IG+N  R
Sbjct:   40 KQLREAKAEAESAGEATRKDIDKLRGLHARRVKRLEALLKEEGDNLADARREIASCKAAMAGDAAEFQRWTENHRNESTKLLKELAVIQ-KKVDRAVATEAQAREREGLAMGRLRKVMEGAEVKRQLREALAELESDRNAQARRARANLKLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYG-------TTATAPCGNTSGDGNASAAAAGGKSTGKKAPIGFPWKPPGGIASRGHGSNGGSSGTTTTRAVCSPIGINAFR 302

[Close]

BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot
Match: A0A6H5KGT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT0_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 1.270e-71
Identity = 164/280 (58.57%), Postives = 201/280 (71.79%), Query Frame = 0

Query:    3 RQLRRVRTEADAAGEATRKDIEKLRGLHAKRVRRLEALLKEETENLADARREIAICKSTLAGDAGEFQRWTEEQRYKSGKLLEELARIQQKKVNGAAAQEVTAREREGLAMSRLRKVME--------GVELRRQLREALAELESNRSAQSRRARSDVQLQRAAEIARHEVAMLEAERSRWNEERRSMETALDKLARLVYGVRKTNDKTTATAPKGKALNP--ASSTSAKNALNCSRRP------------ARGAKSEGGWEHVNESARVACSTIGVNVAR 260
            +QLR  + EA+AAGEATR+DI+KLRGLHA+RV+RLEALLKEE +NLADARRE+A CK+T+AG+A EFQRWTE  R +S KLL+ELA IQ KKV+ A A E  AREREGLAM RLRKVME        G E++RQLREALAELES+R+AQ+RRAR+++QLQRAAEIA+ EVAM+E+ER+RW EERRSMETA+++L RLVYG       TTA AP G       AS+ +A +    ++ P            +RG  S GG      + R ACS IGVN  R
Sbjct:  935 KQLREAKAEAEAAGEATRRDIDKLRGLHARRVKRLEALLKEERDNLADARRELASCKATMAGEAAEFQRWTENHRNESTKLLKELAVIQ-KKVDRAVATEAQAREREGLAMGRLRKVMEEARLERAEGAEVKRQLREALAELESDRNAQARRARANLQLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYG-------TTAAAPGGNTSGDGNASAAAAVSKSTWTKAPTGFPWKPPGCIASRGHGSNGGSSGTTAT-RAACSPIGVNAFR 1205

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot

BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEQ4_ECTSI	1.050e-80	60.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KGT0_9PHAE	1.270e-71	58.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 119..146
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	COILS	Coil	Coil	coord: 157..184

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig5332	contig	H-elongata_contig5332:220..2864 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig5332.12672.1	mRNA_H-elongata_contig5332.12672.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig5332 220..2864 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig5332.12672.1 ID=prot_H-elongata_contig5332.12672.1|Name=mRNA_H-elongata_contig5332.12672.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
RCRQLRRVRTEADAAGEATRKDIEKLRGLHAKRVRRLEALLKEETENLAD
ARREIAICKSTLAGDAGEFQRWTEEQRYKSGKLLEELARIQQKKVNGAAA
QEVTAREREGLAMSRLRKVMEGVELRRQLREALAELESNRSAQSRRARSD
VQLQRAAEIARHEVAMLEAERSRWNEERRSMETALDKLARLVYGVRKTND
KTTATAPKGKALNPASSTSAKNALNCSRRPARGAKSEGGWEHVNESARVA
CSTIGVNVAR