mRNA_H-elongata_contig5332.12672.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5332.12672.1
Unique NamemRNA_H-elongata_contig5332.12672.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot
Match: D8LEQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ4_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.050e-80
Identity = 163/271 (60.15%), Postives = 196/271 (72.32%), Query Frame = 1 
Query:    7 RQLRRVRTEADAAGEATRKDIEKLRGLHAKRVRRLEALLKEETENLADARREIAICKSTLAGDAGEFQRWTEEQRYKSGKLLEELARIQQKKVNGAAAQEVTAREREGLAMSRLRKVMEGVELRRQLREALAELESNRSAQSRRARSDVQLQRAAEIARHEVAMLEAERSRWNEERRSMETALDKLARLVYGVRKTNDKTTATAPKGK---------ALNPASSTSAKNALNCSRRPARGAKSEG----GWEHVNESARVACSTIGVNVAR 780
            +QLR  + EA++AGEATRKDI+KLRGLHA+RV+RLEALLKEE +NLADARREIA CK+ +AGDA EFQRWTE  R +S KLL+ELA IQ KKV+ A A E  AREREGLAM RLRKVMEG E++RQLREALAELES+R+AQ+RRAR++++LQRAAEIA+ EVAM+E+ER+RW EERRSMETA+++L RLVYG       TTATAP G          A     ST  K  +    +P  G  S G    G      + R  CS IG+N  R
Sbjct:   40 KQLREAKAEAESAGEATRKDIDKLRGLHARRVKRLEALLKEEGDNLADARREIASCKAAMAGDAAEFQRWTENHRNESTKLLKELAVIQ-KKVDRAVATEAQAREREGLAMGRLRKVMEGAEVKRQLREALAELESDRNAQARRARANLKLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYG-------TTATAPCGNTSGDGNASAAAAGGKSTGKKAPIGFPWKPPGGIASRGHGSNGGSSGTTTTRAVCSPIGINAFR 302
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BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot
Match: A0A6H5KGT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT0_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 1.270e-71
Identity = 164/280 (58.57%), Postives = 201/280 (71.79%), Query Frame = 1 
Query:    7 RQLRRVRTEADAAGEATRKDIEKLRGLHAKRVRRLEALLKEETENLADARREIAICKSTLAGDAGEFQRWTEEQRYKSGKLLEELARIQQKKVNGAAAQEVTAREREGLAMSRLRKVME--------GVELRRQLREALAELESNRSAQSRRARSDVQLQRAAEIARHEVAMLEAERSRWNEERRSMETALDKLARLVYGVRKTNDKTTATAPKGKALNP--ASSTSAKNALNCSRRP------------ARGAKSEGGWEHVNESARVACSTIGVNVAR 780
            +QLR  + EA+AAGEATR+DI+KLRGLHA+RV+RLEALLKEE +NLADARRE+A CK+T+AG+A EFQRWTE  R +S KLL+ELA IQ KKV+ A A E  AREREGLAM RLRKVME        G E++RQLREALAELES+R+AQ+RRAR+++QLQRAAEIA+ EVAM+E+ER+RW EERRSMETA+++L RLVYG       TTA AP G       AS+ +A +    ++ P            +RG  S GG      + R ACS IGVN  R
Sbjct:  935 KQLREAKAEAEAAGEATRRDIDKLRGLHARRVKRLEALLKEERDNLADARRELASCKATMAGEAAEFQRWTENHRNESTKLLKELAVIQ-KKVDRAVATEAQAREREGLAMGRLRKVMEEARLERAEGAEVKRQLREALAELESDRNAQARRARANLQLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYG-------TTAAAPGGNTSGDGNASAAAAVSKSTWTKAPTGFPWKPPGCIASRGHGSNGGSSGTTAT-RAACSPIGVNAFR 1205
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5332.12672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEQ4_ECTSI1.050e-8060.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT0_9PHAE1.270e-7158.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5332contigH-elongata_contig5332:220..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size780
Cds size780
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5332.12672.1prot_H-elongata_contig5332.12672.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5332 220..2864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.7238529-CDS-H-elongata_contig5332:219..3851622930869.7238529-CDS-H-elongata_contig5332:219..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 220..385 +
1691679605.0444984-CDS-H-elongata_contig5332:219..3851691679605.0444984-CDS-H-elongata_contig5332:219..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 220..385 +
1622930869.7375402-CDS-H-elongata_contig5332:836..9431622930869.7375402-CDS-H-elongata_contig5332:836..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 837..943 +
1691679605.0573032-CDS-H-elongata_contig5332:836..9431691679605.0573032-CDS-H-elongata_contig5332:836..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 837..943 +
1622930869.752219-CDS-H-elongata_contig5332:1372..14621622930869.752219-CDS-H-elongata_contig5332:1372..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 1373..1462 +
1691679605.074384-CDS-H-elongata_contig5332:1372..14621691679605.074384-CDS-H-elongata_contig5332:1372..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 1373..1462 +
1622930869.7681274-CDS-H-elongata_contig5332:1698..17911622930869.7681274-CDS-H-elongata_contig5332:1698..1791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 1699..1791 +
1691679605.0929527-CDS-H-elongata_contig5332:1698..17911691679605.0929527-CDS-H-elongata_contig5332:1698..1791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 1699..1791 +
1622930869.7796085-CDS-H-elongata_contig5332:2193..22551622930869.7796085-CDS-H-elongata_contig5332:2193..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 2194..2255 +
1691679605.1068764-CDS-H-elongata_contig5332:2193..22551691679605.1068764-CDS-H-elongata_contig5332:2193..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 2194..2255 +
1622930869.7983866-CDS-H-elongata_contig5332:2602..28641622930869.7983866-CDS-H-elongata_contig5332:2602..2864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 2603..2864 +
1691679605.116878-CDS-H-elongata_contig5332:2602..28641691679605.116878-CDS-H-elongata_contig5332:2602..2864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5332 2603..2864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5332.12672.1

>prot_H-elongata_contig5332.12672.1 ID=prot_H-elongata_contig5332.12672.1|Name=mRNA_H-elongata_contig5332.12672.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
RCRQLRRVRTEADAAGEATRKDIEKLRGLHAKRVRRLEALLKEETENLAD
ARREIAICKSTLAGDAGEFQRWTEEQRYKSGKLLEELARIQQKKVNGAAA
QEVTAREREGLAMSRLRKVMEGVELRRQLREALAELESNRSAQSRRARSD
VQLQRAAEIARHEVAMLEAERSRWNEERRSMETALDKLARLVYGVRKTND
KTTATAPKGKALNPASSTSAKNALNCSRRPARGAKSEGGWEHVNESARVA
CSTIGVNVAR
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mRNA from alignment at H-elongata_contig5332:220..2864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5332.12672.1 ID=mRNA_H-elongata_contig5332.12672.1|Name=mRNA_H-elongata_contig5332.12672.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2645bp|location=Sequence derived from alignment at H-elongata_contig5332:220..2864+ (Himanthalia elongata Himel1 dioecious)
CGTTGCCGGCAGCTTCGGAGGGTGAGGACGGAAGCCGACGCCGCCGGCGA
GGCCACTCGCAAGGATATCGAGAAGCTGCGGGGACTGCACGCGAAGAGGG
TTCGACGGCTGGAAGCCCTACTGAAAGAAGAAACGGAAAATCTTGCAGAC
GCCCGTCGAGAGATAGGTATAGACGTCTACTGTATGTACACCAAATCGTT
GTTTGCGCCTTCCCTAAAAGCGATTGAACATGTGGAACATTTTTCTATCG
GAGATGTAGCCCCAAAGTCGGTTGGACCAGGCAGAGTGACCTGAAACGTT
TGGAGTCAGTTGATAGGGCTGTGACCACGTTCAAGCGGACGATGGTGGGT
CTCTGCGTCGTGCGTCGCGATGTCGGCTACCGTTGAACGTTTTTTATAAC
CATTTACCCACTCTCTTGAGAAAATGAGGTACATGTCGACTTGAAATCCG
TGACGCGAATATGTCCGCCATGAATTGTACGCCATCCACATGGAAGTCGA
GGGCGACTAGAATAAACCCTAACCATTTGCGATCGCCTCGCTAGAGTGGT
CAAGGGTTGTCGATATGTAAACCTCGTCGACAAATGCTCCCGCATATTTC
ATTTCCCTGTATTCCAGCCATTTGCAAATCTACCTTAGCTGGTGACGCTG
GGGAGTTCCAGCGATGGACGGAAGAGCAGAGATATAAATCTGGAAAACTT
CTTGAAGAACTCGCCCGGATACAGGTGCACTGCAAGCAGGGAAGGAAGAC
GAGATCGAAACAATCGGGGGGGTCCCGAGCTGGGTCCTACGGTGAACCCT
ATGCCGCTGAAGCGGAGGGGGTTCGTGCAGAAAATAGAACCAGTAGATGC
CGTGTCCGTTTTGAGCGCATCCGCGATCTGCACTTATGGGATGCTCGAAA
CTCTGGAGCTTGAGCATTGTCTTGTATGGGATTTTGTTATATTATTTCAT
CGGTTGGTACAGTCGGTGACCTCGGTCGACCACCTCGCAAGCGTTATATA
CCGCGTTCGCATACCACGGCACTCCCGACCATATTATGGTTACCAGACGG
ATACCCCCTGCGTTCACGAACGCAAATACATTGCCACGGGAAGCTGCAAA
ACCCTCCTCCCGCTCCACCCTCCACCCCCGCGGACGGTGCTGCACGCCTT
GAGCAGAAGAAAGTGAACGGTGCTGCGGCCCAAGAAGTGACGGCACGGGA
GAGGGAGGGGCTGGCGATGAGTCGATTGAGGAAGGTCATGGAGGTGCGGG
ATTCGAGCTTCGATCCACCCTTGCTCGTGCTAAAGCATCCTCGGCTCCCT
TGCCTGGGGGGTCTAAGCCCACACAAAGAACAATGTCCTTGCATAGTACA
GTACAATAGAGTATACTTTATTATAGTACACCCTTTCGTCTCTCCTGCTC
TCTCGCCCGGGGGGTGGGGGGGGGGCACTGGCAATTGCGGCCTTCCGGTT
TGCAGGAAGCGCGGCTTGAACGCGCGGAGGGCGTCGAGCTCCGAAGACAG
CTTAGGGAGGCTCTGGCGGAGCTCGAGTCCAATCGTAGCGCTCAGTCTCG
ACGAGCGAGGTCGGACGTTCAGGTGAAGGCAAAAAAGAAATGTTATCCTC
TCCGTTGTGATGATTTCGCCTGTCCTTGGTGGTGCGGCGAGGAAGCGGGA
GGGCAGGGCGGTGTACGAAGAAAGGACTTCTCACTAGGATGCACACGTTG
TACCCGCTGTTTGCCTTCGGTCATTACCTCCGAGAAGCGGTGCGTGCCCA
CCTTTTTGTTTGTTTTTTGCCGATGTTTGCCAATTCTCTCTCGCCGTTTG
CTGATTTATGCTGCTCTGAACGTGTGGGTGTTACTGTTTGGGGATTACCT
GGTTGGGGGTCTGTGGTTCGTTCCACGCAACGCTCCACCTAAACGTGTTT
ATGAACCGTCCCTGCTGCCTACCTACCGTTCGTATATGTATATATATATA
TATATATAACTCATTATTGGACAGCTTCAGCGAGCGGCAGAAATCGCGCG
ACACGAGGTTGCAATGCTCGAGGCGGAACGCTCAAGGTGAGCTGGCATAG
ATACCGTAACGACCATATCCATTCTTGGCACTTCATACCGTAACGACCTG
ACGGCAGGCTACCATGTAGATGGGAGAAACCTTCTCGATTATCCGTTGTC
CTCGTATAATACAGCTGTCGAGATAGTATCATTTTTATGAGGCGGCCAAA
CATAGGGGAGGGGATAGCGCGTGGCAGTCAAGAAAACGTTGTTAATCGAG
TGGTTGGCGACGAAGGAGGAAGAAATCATTTACAATATCCTATATTTTTC
ACGGTTCTACGAACGCAGGTGTTGAAACGCCAGGCGTTCTTTTTTTTAAT
CATTTTTCGATGTTCTTTCTCTGACGCCTGCAGATGGAATGAAGAGCGGA
GATCGATGGAGACTGCATTGGATAAACTCGCGCGGCTGGTGTACGGAGTC
CGTAAGACAAATGACAAGACAACCGCAACCGCTCCGAAGGGTAAAGCCCT
CAACCCCGCCAGCTCCACGAGCGCAAAGAACGCTTTGAATTGCTCGCGGA
GACCCGCTAGAGGCGCGAAGTCGGAAGGAGGGTGGGAACATGTCAACGAG
AGCGCAAGGGTGGCGTGTAGTACAATTGGCGTCAACGTTGCACGA
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Coding sequence (CDS) from alignment at H-elongata_contig5332:220..2864+

>mRNA_H-elongata_contig5332.12672.1 ID=mRNA_H-elongata_contig5332.12672.1|Name=mRNA_H-elongata_contig5332.12672.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig5332:220..2864+ (Himanthalia elongata Himel1 dioecious)
CGTTGCCGGCAGCTTCGGAGGGTGAGGACGGAAGCCGACGCCGCCGGCGA
GGCCACTCGCAAGGATATCGAGAAGCTGCGGGGACTGCACGCGAAGAGGG
TTCGACGGCTGGAAGCCCTACTGAAAGAAGAAACGGAAAATCTTGCAGAC
GCCCGTCGAGAGATAGCGTTGCCGGCAGCTTCGGAGGGTGAGGACGGAAG
CCGACGCCGCCGGCGAGGCCACTCGCAAGGATATCGAGAAGCTGCGGGGA
CTGCACGCGAAGAGGGTTCGACGGCTGGAAGCCCTACTGAAAGAAGAAAC
GGAAAATCTTGCAGACGCCCGTCGAGAGATAGCCATTTGCAAATCTACCT
TAGCTGGTGACGCTGGGGAGTTCCAGCGATGGACGGAAGAGCAGAGATAT
AAATCTGGAAAACTTCTTGAAGAACTCGCCCGGATACAGCCATTTGCAAA
TCTACCTTAGCTGGTGACGCTGGGGAGTTCCAGCGATGGACGGAAGAGCA
GAGATATAAATCTGGAAAACTTCTTGAAGAACTCGCCCGGATACAGCAGA
AGAAAGTGAACGGTGCTGCGGCCCAAGAAGTGACGGCACGGGAGAGGGAG
GGGCTGGCGATGAGTCGATTGAGGAAGGTCATGGAGCAGAAGAAAGTGAA
CGGTGCTGCGGCCCAAGAAGTGACGGCACGGGAGAGGGAGGGGCTGGCGA
TGAGTCGATTGAGGAAGGTCATGGAGGGCGTCGAGCTCCGAAGACAGCTT
AGGGAGGCTCTGGCGGAGCTCGAGTCCAATCGTAGCGCTCAGTCTCGACG
AGCGAGGTCGGACGTTCAGGGCGTCGAGCTCCGAAGACAGCTTAGGGAGG
CTCTGGCGGAGCTCGAGTCCAATCGTAGCGCTCAGTCTCGACGAGCGAGG
TCGGACGTTCAGCTTCAGCGAGCGGCAGAAATCGCGCGACACGAGGTTGC
AATGCTCGAGGCGGAACGCTCAAGCTTCAGCGAGCGGCAGAAATCGCGCG
ACACGAGGTTGCAATGCTCGAGGCGGAACGCTCAAGATGGAATGAAGAGC
GGAGATCGATGGAGACTGCATTGGATAAACTCGCGCGGCTGGTGTACGGA
GTCCGTAAGACAAATGACAAGACAACCGCAACCGCTCCGAAGGGTAAAGC
CCTCAACCCCGCCAGCTCCACGAGCGCAAAGAACGCTTTGAATTGCTCGC
GGAGACCCGCTAGAGGCGCGAAGTCGGAAGGAGGGTGGGAACATGTCAAC
GAGAGCGCAAGGGTGGCGTGTAGTACAATTGGCGTCAACGTTGCACGAAT
GGAATGAAGAGCGGAGATCGATGGAGACTGCATTGGATAAACTCGCGCGG
CTGGTGTACGGAGTCCGTAAGACAAATGACAAGACAACCGCAACCGCTCC
GAAGGGTAAAGCCCTCAACCCCGCCAGCTCCACGAGCGCAAAGAACGCTT
TGAATTGCTCGCGGAGACCCGCTAGAGGCGCGAAGTCGGAAGGAGGGTGG
GAACATGTCAACGAGAGCGCAAGGGTGGCGTGTAGTACAATTGGCGTCAA
CGTTGCACGA
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