mRNA_H-elongata_contig53312.12670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53312.12670.1
Unique NamemRNA_H-elongata_contig53312.12670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.550e-22
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F + F  +P+Y DNT+ LH  GNR++SSR KHIALR+FF++ELV EGKI+IHYA T   LA +GTK
Sbjct:  122 MMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTK 193
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.930e-21
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F + F  +P+Y DNT+ LH  GNR++SSR KHIALR+FF++ELV EGKI+IHY +T   LAD+GTK
Sbjct:  907 MMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTK 978
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.960e-21
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F + F  +P+Y DNT+ LH  GNR++SSR KHIALR+FF++ELV EGKI+IHY  T   LAD+GTK
Sbjct: 1576 MMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 1647
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.470e-21
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F + F  +P+Y DNT+ LH  GNR++SSR KHIALR+FF++ELV EGKI+IHY  T   LAD+GTK
Sbjct:  347 MMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTK 418
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.370e-20
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F + F  VPLY DNT+ LH  GNR++SSR  HIALR+F+++ELV EG+I+IHY  T   LAD+GTK
Sbjct: 1105 MLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTK 1176
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.880e-20
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL   + F  +P+Y DNT+ LH  GNR++SSR KHIALR+FF++ELV EGKI+IHY  T   LAD+GTK
Sbjct:  568 MMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 639
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.070e-19
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            ++ EL   + F  VPLY DNT+ LH  GNR++SSR KHIALR+F+++EL+ EG+I+IHY  T   +AD+GTK
Sbjct: 1077 ILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTK 1148
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.470e-19
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            ++ EL F + F  VPLY DNT+ LH  GNR++SSR KHIALR+FF+++LV EGKI IH+  T    AD+GTK
Sbjct:  265 ILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTK 336
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.500e-18
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F   F   PLYI NT+ LH+ GN+T+S R KH+ALR+F+++E+V+EG+I+IHY  T   LAD+GTK
Sbjct:  601 MMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTK 671
[Close]
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.640e-18
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELVEEGKINIHYAKTAYQLADLGTK 216
            M+ EL F + F  V LY  NT+ LH  GNR++SSR KHIALR+F+++ELV EG+I+IHY  T    AD+GTK
Sbjct:  733 MLTELGFGKEFAQVRLYCGNTATLHALGNRSFSSREKHIALRFFYIRELVSEGRISIHYVPTDSNPADIGTK 804
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53312.12670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE5.550e-2259.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE1.930e-2159.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE4.960e-2159.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE6.470e-2159.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBV6_9PHAE4.370e-2058.33Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JME8_9PHAE5.880e-2058.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE2.070e-1954.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE3.470e-1956.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE2.500e-1854.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J9Q7_9PHAE4.640e-1855.56gag_pre-integrs domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53312contigH-elongata_contig53312:715..930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.5
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog7425.NV18911-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.5782616-CDS-H-elongata_contig53312:714..9301622930869.5782616-CDS-H-elongata_contig53312:714..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53312 715..930 +
1691679604.990432-CDS-H-elongata_contig53312:714..9301691679604.990432-CDS-H-elongata_contig53312:714..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53312 715..930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53312.12670.1prot_H-elongata_contig53312.12670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53312 715..930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53312.12670.1

>prot_H-elongata_contig53312.12670.1 ID=prot_H-elongata_contig53312.12670.1|Name=mRNA_H-elongata_contig53312.12670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MIMELSFDESFGGVPLYIDNTSALHIAGNRTYSSRAKHIALRYFFVQELV
EEGKINIHYAKTAYQLADLGTK
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mRNA from alignment at H-elongata_contig53312:715..930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53312.12670.1 ID=mRNA_H-elongata_contig53312.12670.1|Name=mRNA_H-elongata_contig53312.12670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig53312:715..930+ (Himanthalia elongata Himel1 dioecious)
ATGATTATGGAGCTTAGCTTCGATGAGAGCTTCGGCGGCGTGCCGTTGTA
CATCGACAACACGTCAGCACTGCACATCGCCGGCAACCGCACCTACAGCT
CTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAGAGCTTGTA
GAGGAGGGCAAGATCAACATCCACTACGCCAAGACCGCGTATCAGCTGGC
GGACTTGGGCACCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig53312:715..930+

>mRNA_H-elongata_contig53312.12670.1 ID=mRNA_H-elongata_contig53312.12670.1|Name=mRNA_H-elongata_contig53312.12670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig53312:715..930+ (Himanthalia elongata Himel1 dioecious)
ATGATTATGGAGCTTAGCTTCGATGAGAGCTTCGGCGGCGTGCCGTTGTA
CATCGACAACACGTCAGCACTGCACATCGCCGGCAACCGCACCTACAGCT
CTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTGCAAGAGCTTGTA
GAGGAGGGCAAGATCAACATCCACTACGCCAAGACCGCGTATCAGCTGGC
GGACTTGGGCACCAAGATGATTATGGAGCTTAGCTTCGATGAGAGCTTCG
GCGGCGTGCCGTTGTACATCGACAACACGTCAGCACTGCACATCGCCGGC
AACCGCACCTACAGCTCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTT
CGTGCAAGAGCTTGTAGAGGAGGGCAAGATCAACATCCACTACGCCAAGA
CCGCGTATCAGCTGGCGGACTTGGGCACCAAG
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