mRNA_H-elongata_contig53100.12640.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.290e-38 Identity = 82/166 (49.40%), Postives = 108/166 (65.06%), Query Frame = 1
Query: 1 RKTEYITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQWETVVDP-ILGEASQ--VRWTGICSGEGGSRNKTMKVMEKLKARQPFKLKEKEGQENALQAKR-----LKKLQQKNARR 474
R Y E+ +A+DYADHAGR +G+ D RLA RKKQ AL++GP SRE+ +Q DE+NRIPLP IP+KFGVRLPP ++Q TLPNLQWE +P + EA + V S G+RNK K L+ ++P LKEK+ QE A +AK ++LQ +NA+R
Sbjct: 23 RMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEEANRAKAEAKAARRRLQAQNAKR 188
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A4V1IWR4_9FUNG (Transcription initiation factor TAFII31 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IWR4_9FUNG) HSP 1 Score: 69.3 bits (168), Expect = 4.860e-12 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y+T++ +A+ YADHAG+ V LDD +LA + +GP RE +T+ E N PLP IPE++G+RLPP ++ T N Q
Sbjct: 35 YMTDVFQDAQLYADHAGKRDVDLDDVQLAIQGIVNNSFTGPPPREFLTELAAEKNSAPLPLIPERYGIRLPPEQYCLTGANYQ 117
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: F4P4F0_BATDJ (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4P4F0_BATDJ) HSP 1 Score: 68.6 bits (166), Expect = 6.320e-12 Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y+ ++ +++ +ADHAG + +DD RLA + +GP SRE + + ++ N IPLP IPEKFG+RLPP + T N Q
Sbjct: 34 YVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 116
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A1S8VMC7_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VMC7_9FUNG) HSP 1 Score: 70.5 bits (171), Expect = 8.970e-12 Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y+ ++ +++ +ADHAG ++ +DD RLA + +GP SRE + + ++ N IPLP IPEKFG+RLPP + T N Q
Sbjct: 48 YVQDVLQDSQVFADHAGHKELEVDDVRLAIESRVAHSFTGPPSRETMMELAEKKNSIPLPLIPEKFGLRLPPERNTLTKANFQ 130
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A197JZG0_9FUNG (TFIID-31kDa-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZG0_9FUNG) HSP 1 Score: 69.7 bits (169), Expect = 1.260e-11 Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y T++ +A Y++HAGR VGLDD RLA + + + P +E + + +E NR+PLP IPEK+G+RLP + T N Q
Sbjct: 40 YTTDVFQDALLYSEHAGRTDVGLDDVRLAIQGRVNHSFTSPPPKEFLLELAEEKNRVPLPLIPEKYGIRLPHERHCLTAVNFQ 122
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A177WG97_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WG97_BATDL) HSP 1 Score: 68.6 bits (166), Expect = 4.880e-11 Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y+ ++ +++ +ADHAG + +DD RLA + +GP SRE + + ++ N IPLP IPEKFG+RLPP + T N Q
Sbjct: 48 YVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 130
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: UPI000644E8C7 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E8C7) HSP 1 Score: 68.2 bits (165), Expect = 1.820e-10 Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQWETVVDPILGEASQVRWTGICSGEGGSRNKTM 357
Y+ E+ ++ Y++H+GR+++ + D RL+ + + + P RE + +E NRIPLP IP+KFGV LPP ++ PN Q VDP + +Q + + G NKT+
Sbjct: 204 YVYEVLQDSIAYSEHSGRSEIDISDIRLSIQSRVNFSFTQPPPRELLLSISEEKNRIPLPPIPQKFGVLLPPDEYCLNYPNYQ----VDPAKPKPAQHQAPLSHPSQRGQYNKTV 314
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A1Y2GSY7_9FUNG (Transcription initiation factor IID, 31kD subunit-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GSY7_9FUNG) HSP 1 Score: 66.2 bits (160), Expect = 2.870e-10 Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y T++ +A Y++HAGR +VGL+D +LA + + + P +E + + +E N++PLP IPEK+G+RLP + T N Q
Sbjct: 40 YTTDVFQDALLYSEHAGRTEVGLEDVKLAIQGRVNHSFTSPPLKEFLLELAEEKNKVPLPLIPEKYGIRLPHERHCLTAVNFQ 122
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A4V1J4V0_9FUNG (Transcription initiation factor TAFII31 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J4V0_9FUNG) HSP 1 Score: 63.2 bits (152), Expect = 9.080e-10 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTTLPNLQ 261
Y E+ +A Y++HAG+ + ++D RLA + + + P S+E + + +E N PLP +PEKFG+RLPP K T N Q
Sbjct: 43 YTVEVFQDALIYSEHAGKNDLDVEDVRLAIQGRVNHSFTTPPSKEFLLELAEERNSTPLPLLPEKFGIRLPPEKHCLTAVNFQ 125
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Match: A0A2G5B8F3_COERN (TFIID-31kDa-domain-containing protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B8F3_COERN) HSP 1 Score: 63.9 bits (154), Expect = 9.430e-10 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 13 YITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEITQQVDEINRIPLPAIPEKFGVRLPPPKFQTT 246
Y ++ +A YA+HA +A + +DD RLA + + + P +E + + +E N+ PLP IPEK+GVRLPP K+ T
Sbjct: 45 YTVDVMQDALVYAEHAKKADIDMDDMRLAIQGRVNYSFTSPPDKEFLLELAEERNKHPLPLIPEKYGVRLPPEKYTLT 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53100.12640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53100.12640.1 >prot_H-elongata_contig53100.12640.1 ID=prot_H-elongata_contig53100.12640.1|Name=mRNA_H-elongata_contig53100.12640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp RKTEYITEIATEAKDYADHAGRAKVGLDDARLAARKKQYALASGPLSREEback to top mRNA from alignment at H-elongata_contig53100:1669..2986- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53100.12640.1 ID=mRNA_H-elongata_contig53100.12640.1|Name=mRNA_H-elongata_contig53100.12640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1318bp|location=Sequence derived from alignment at H-elongata_contig53100:1669..2986- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53100:1669..2986- >mRNA_H-elongata_contig53100.12640.1 ID=mRNA_H-elongata_contig53100.12640.1|Name=mRNA_H-elongata_contig53100.12640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig53100:1669..2986- (Himanthalia elongata Himel1 dioecious)back to top |