prot_H-elongata_contig5310.12639.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5310.12639.1
Unique Nameprot_H-elongata_contig5310.12639.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length474
Homology
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BLAST of mRNA_H-elongata_contig5310.12639.1 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.180e-17
Identity = 57/141 (40.43%), Postives = 71/141 (50.35%), Query Frame = 0 
Query:  334 AISGGSKGGG--ERYPRLSFTIKANVKRCAICRTKAAEFQSFGHPLSDQVPLAACNECIDMLCYDEDHKPLTGEMAGEDPFASPSSEMPTDSKGGSSSLSSVQGDEPLEFPPGNGEEGEEENGEANGGGPKGWRLYQRFFE 472
            A  GG +G G  E YPRLSF    N +RC IC TK A   SFGHPLSD+  L  C EC +ML  D D KPL GE+AG+     P         G ++S S  QG E  +                  GGP+GWR+++ + E
Sbjct:  304 AAVGGGRGEGKKEEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPP--------PGDTTSPSPTQGPEASQA----------------AGGPRGWRVFRCYDE 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5310.12639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIS9_9PHAE4.180e-1740.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableCOILSCoilCoilcoord: 68..88
IPR022042snRNA-activating protein complex, subunit 3PFAMPF12251zf-SNAP50_Ccoord: 344..404
e-value: 3.1E-8
score: 33.5
IPR022042snRNA-activating protein complex, subunit 3PANTHERPTHR13421FAMILY NOT NAMEDcoord: 235..402

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5310contigH-elongata_contig5310:1445..4609 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5310.12639.1mRNA_H-elongata_contig5310.12639.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5310 1412..5310 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5310.12639.1 ID=prot_H-elongata_contig5310.12639.1|Name=mRNA_H-elongata_contig5310.12639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=474bp
MEDKRRGKATASSRRGKRGKQGGGVAKAVANGEKMKPKARGKGKVAQARG
NGKEKARKAKSRKGSMPRDEEEEEMKETDEEEEQEQDNSMDDEGGGEAMA
SSRRGKRGKQGRGENLKPKARGKVAQAKGDGKEKARGTKDRKEAMSIDEQ
EDEREETDEEEEQEKVQEGARQGSPSKGSAIGRSEEAQEGRARKRKYNLK
PKDRKIEKNRSNQGGKFKRSLGIAETGGEVLWASDVTVGNMRPIIGERYM
FVHHCDCSHMFMVSDIRLEDIPETPLTSTSASTRTAEPNNIPATAFPAEE
RSSRVARPNQAGVGRRDADRSSSADVDEEGTERAISGGSKGGGERYPRLS
FTIKANVKRCAICRTKAAEFQSFGHPLSDQVPLAACNECIDMLCYDEDHK
PLTGEMAGEDPFASPSSEMPTDSKGGSSSLSSVQGDEPLEFPPGNGEEGE
EENGEANGGGPKGWRLYQRFFES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022042snRNA-activating_su3