mRNA_H-elongata_contig5310.12639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5310.12639.1
Unique NamemRNA_H-elongata_contig5310.12639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5310.12639.1 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.460e-16
Identity = 57/141 (40.43%), Postives = 71/141 (50.35%), Query Frame = 1 
Query: 1033 AISGGSKGGG--ERYPRLSFTIKANVKRCAICRTKAAEFQSFGHPLSDQVPLAACNECIDMLCYDEDHKPLTGEMAGEDPFASPSSEMPTDSKGGSSSLSSVQGDEPLEFPPGNGEEGEEENGEANGGGPKGWRLYQRFFE 1449
            A  GG +G G  E YPRLSF    N +RC IC TK A   SFGHPLSD+  L  C EC +ML  D D KPL GE+AG+     P         G ++S S  QG E  +                  GGP+GWR+++ + E
Sbjct:  304 AAVGGGRGEGKKEEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPP--------PGDTTSPSPTQGPEASQA----------------AGGPRGWRVFRCYDE 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5310.12639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIS9_9PHAE1.460e-1640.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5310contigH-elongata_contig5310:1412..5310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsnRNA-activating protein complex, subunit 3
Ec32 orthologEc-25_003030.1
Exons4
Model size2156
Cds size1422
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5310.12639.1prot_H-elongata_contig5310.12639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5310 1445..4609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.478514-UTR-H-elongata_contig5310:1411..14441622930866.478514-UTR-H-elongata_contig5310:1411..1444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 1412..1444 +
1691679603.8959463-UTR-H-elongata_contig5310:1411..14441691679603.8959463-UTR-H-elongata_contig5310:1411..1444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 1412..1444 +
1622930866.5571291-UTR-H-elongata_contig5310:4609..53101622930866.5571291-UTR-H-elongata_contig5310:4609..5310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 4610..5310 +
1691679603.9411533-UTR-H-elongata_contig5310:4609..53101691679603.9411533-UTR-H-elongata_contig5310:4609..5310Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 4610..5310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.4985967-CDS-H-elongata_contig5310:1444..21241622930866.4985967-CDS-H-elongata_contig5310:1444..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 1445..2124 +
1691679603.9041545-CDS-H-elongata_contig5310:1444..21241691679603.9041545-CDS-H-elongata_contig5310:1444..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 1445..2124 +
1622930866.512738-CDS-H-elongata_contig5310:2753..28161622930866.512738-CDS-H-elongata_contig5310:2753..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 2754..2816 +
1691679603.9125948-CDS-H-elongata_contig5310:2753..28161691679603.9125948-CDS-H-elongata_contig5310:2753..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 2754..2816 +
1622930866.5278583-CDS-H-elongata_contig5310:3432..38291622930866.5278583-CDS-H-elongata_contig5310:3432..3829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 3433..3829 +
1691679603.923672-CDS-H-elongata_contig5310:3432..38291691679603.923672-CDS-H-elongata_contig5310:3432..3829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 3433..3829 +
1622930866.5413437-CDS-H-elongata_contig5310:4327..46091622930866.5413437-CDS-H-elongata_contig5310:4327..4609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 4328..4609 +
1691679603.932596-CDS-H-elongata_contig5310:4327..46091691679603.932596-CDS-H-elongata_contig5310:4327..4609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 4328..4609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5310.12639.1

>prot_H-elongata_contig5310.12639.1 ID=prot_H-elongata_contig5310.12639.1|Name=mRNA_H-elongata_contig5310.12639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=474bp
MEDKRRGKATASSRRGKRGKQGGGVAKAVANGEKMKPKARGKGKVAQARG
NGKEKARKAKSRKGSMPRDEEEEEMKETDEEEEQEQDNSMDDEGGGEAMA
SSRRGKRGKQGRGENLKPKARGKVAQAKGDGKEKARGTKDRKEAMSIDEQ
EDEREETDEEEEQEKVQEGARQGSPSKGSAIGRSEEAQEGRARKRKYNLK
PKDRKIEKNRSNQGGKFKRSLGIAETGGEVLWASDVTVGNMRPIIGERYM
FVHHCDCSHMFMVSDIRLEDIPETPLTSTSASTRTAEPNNIPATAFPAEE
RSSRVARPNQAGVGRRDADRSSSADVDEEGTERAISGGSKGGGERYPRLS
FTIKANVKRCAICRTKAAEFQSFGHPLSDQVPLAACNECIDMLCYDEDHK
PLTGEMAGEDPFASPSSEMPTDSKGGSSSLSSVQGDEPLEFPPGNGEEGE
EENGEANGGGPKGWRLYQRFFES*
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mRNA from alignment at H-elongata_contig5310:1412..5310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5310.12639.1 ID=mRNA_H-elongata_contig5310.12639.1|Name=mRNA_H-elongata_contig5310.12639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3899bp|location=Sequence derived from alignment at H-elongata_contig5310:1412..5310+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCGCTGGAGCAGGAGCAAGATGATTTTATGGAGGACAAACGTAG
GGGGAAGGCGACGGCGTCTTCGCGGCGTGGGAAGCGGGGCAAGCAGGGAG
GAGGCGTGGCGAAGGCGGTCGCCAACGGCGAAAAAATGAAGCCCAAGGCT
AGGGGGAAGGGGAAAGTAGCGCAGGCGAGAGGCAATGGGAAGGAGAAAGC
TCGAAAGGCGAAAAGTAGGAAAGGATCGATGCCAAGAGACGAGGAAGAGG
AGGAGATGAAAGAGACAGACGAGGAAGAGGAACAGGAGCAAGATAATTCT
ATGGACGACGAAGGTGGGGGGGAGGCAATGGCGTCTTCGCGGCGCGGGAA
GCGGGGAAAGCAAGGACGAGGCGAAAATCTAAAGCCCAAGGCTAGGGGAA
AGGTAGCGCAGGCAAAAGGTGACGGGAAGGAGAAAGCTCGAGGGACGAAG
GATAGGAAAGAAGCGATGTCAATTGACGAACAAGAGGATGAGAGGGAAGA
GACAGACGAGGAAGAGGAGCAGGAGAAGGTTCAAGAGGGAGCGAGACAGG
GCTCTCCTTCCAAAGGCTCTGCGATAGGGAGGTCAGAGGAGGCCCAAGAG
GGTAGGGCCAGGAAGAGGAAATATAATTTAAAACCGAAGGATAGAAAGAT
CGAAAAGAATCGGTCCAATCAGGGAGGGAAGTTCAAGCGGAGCTTGGGCA
TCGCGGAGACAGGGTGAGAGAGGTGTGACAATTTGGCTCCTTTCGAGTAC
TCTGCCCATGGCTGCTGTGTCTGGCAGACACTATTTCTTTTCCGTTTTTT
TTTTCTTTCCAGAAACGAGACGGGGGAAACAGGGTTAGAAGACTCTCGGC
GCCATTTTCTAGCGGAAAACTACGTCGGTGTAAGCTCTCATCCTGTCTGG
AAAACATGAGCTCCTCTTTGCGGGGTTGTGGTAGATAAAACCGAACTTTG
CGAGCGGTGGATGCTCGCCGCAAACGCAATGCGCACTTTTTGAGGGAAAG
TGGAAACCCCCGGGAGGCATCCGATCCGATGAAGATCCCCCACGCGGGAG
ATAATATTCTAAAAAACACACACACAAAGCCTAGCCGCGATATTGTGGTG
CACGCGCGCGGGCGGGGAAAAATACGATTATTAGTGTTCCCCACTCCACG
TCCCCTCGATATCCCTCCTGTGCTGCTTCGTGCCCGCTCGTGTCTCGATC
CCCCTCCTCCGCCGTTTCTGCACTTTGATGCCGGCGCCGCATTGTAACGC
AACGTTTGCCTGCTGGGTGGCGGGGGTGGCGGGGGGGCGGGGGATTCTTT
ATTTCGTTCGCGTACGCGCGTCGACTTCGTCGTCATCCTCAGCGGGGAGG
TGTTGTGGGCGTCAGACGTGACCGTGGGAAATATGAGGCCCATCATCGGC
GAGAGGCAAGCGCCGCCGCTTGCAAAGCGTTATCGTTGTCGTTGTATGTC
CGCACGGTGTGACCACGGGTGGAGAAGGGAAATAGGGGTTGCTAGCCTTG
GACTCTCCATACGCTTCTTGTTATTTTTTTTTAAAGATGTTTGGTTTCAA
TACTCGTCCGTCCGTCCGAAAACTCTCATGAATTTTTGGTGGAACCCCCA
ATAAGGCGTTTTGGAAGTACTTAAATTTTGAATGTGGAAAACCCCCCGAA
ACTTGCGAAAGACATATACGCCGTCGCGTTGCGCGAAGGGCAGGTCTGCC
CGATGCACCCAAAAACTTCTCTAGGGGACGGCCGATGATGTGACCGCCTC
CGCGAGACGGCGCGGGACGATCGCAAGTGATGCCAGACCCCCACGAGAGA
CTTCCCTCTGTTTAACCCGATTTTTATGCGCCTAACGAGCTGCCTGCTTG
GTGGCGAATGTCGCATCGTATCATATATATATAACAAAAGATTGATCGCT
GCTTGCAAGACGTGGGCGCGGAATGCGTGCTCCCCGACTACGCCCCCGCC
CGTCCCCTCTCCCCATCCTACACCAGCCCTTTCTCCCGCACCTTTTCTCC
CTGGCGATGTTGCTGAGGTAGGTACATGTTCGTCCACCATTGCGACTGCA
GCCACATGTTCATGGTGTCAGACATTCGCCTGGAGGACATTCCCGAGACC
CCCCTGACCTCGACTTCGGCTTCGACTCGGACCGCCGAGCCTAACAACAT
ACCCGCAACGGCTTTCCCAGCGGAAGAAAGGAGCAGCCGCGTCGCGCGGC
CTAACCAAGCAGGTGTTGGGCGACGCGATGCCGACAGGAGTTCCAGCGCT
GACGTCGACGAAGAAGGGACGGAGAGAGCTATCTCCGGGGGTAGTAAGGG
TGGCGGGGAGAGGTATCCCCGTCTATCGTTCACTATAAAGGCTAACGTGA
AGCGATGCGCTATATGCAGGACTAAGGCTGCCGAGTTCCAAAGCTTCGGG
CATCCCTTATCAGATCAGGCGAGGACGAGGGCGAGGACGGGTGGTTGCTA
ACACGGTAGTATAGTTTTGCTGTGTATCTATAGATATATGAATAGCTCTA
AAGGTATGCCGTACCGGTGTTTATTAATTAATCTGTGCATAGCTCTATTA
ATAGATGTATTTATCTCCTCGTATGTAGATAAAATGTAAGTAAATATATA
ATTTGTTCTTCTTTAGTGTATATGATAATTTGTAATATGCCGAGAACGCC
ACAAAAAAATAGGAATTATGATTATATTTTGGTTCAAAACAGTTAATAAA
AATGATCGGAAGATGATAATACAAGAATCTCACGGGAGCGAAATCGCCCG
AAATCGAACACCCCTACCCTACCCTACCCTACCCCACGAGAATCCGAAAG
ACCTGGCTTGCTCGCCCAAAGCGAACCTCAAACCCCTTGCCTCTGTTGAA
ACGCCGCCCACATTCTGTTCGCCACGACTTCATCACCCGACCCCCCCTTA
CATTTTGCCGCCTTAGGTTCCCCTTGCCGCGTGCAACGAGTGCATCGACA
TGCTTTGCTACGACGAGGACCATAAGCCGCTCACCGGGGAGATGGCCGGG
GAGGATCCATTCGCGTCCCCGTCATCGGAGATGCCTACCGACTCCAAAGG
AGGGTCCTCGTCGTTGTCTTCAGTCCAAGGCGATGAACCGCTTGAGTTCC
CCCCGGGAAATGGCGAAGAAGGGGAAGAGGAAAATGGAGAGGCAAACGGG
GGTGGTCCAAAGGGATGGAGGCTTTACCAGCGCTTCTTCGAATCCTGAGT
GGGACGGGGCGTGCTTCCGCTTGATGCCCCACCCCAAAGACGGAAGAATT
CCTCACAAGGTTGTGGATGATGTCCGTTGCCGTTGGTTGAAGAACCAAGC
CTCGGGAGAACAGGGTGGGGGGGTAGGAGCTTTAAGACGTTGTTTTGTAA
CCTTTCTTGATCTTGGAATGACAACGGTTGATTCGGTGATTTTGGTTTGG
TAACGGTTGAGCAATCCGTCAGATCAAAACTCTCGTCAGTATAGTGACCG
TTAATTGTTGAAGGGAACAAAAGGGCTGCGAGAAAGGTCATTGATTGTTC
AAGGAGCCGAATCGATCCTGTCTAATATATCCCCAGATAACATTGCGCCT
CAGCTAGACAAGAAAAACGGGATTTATTAATGTTAACAGTAGCTATTATA
TACAGTATGAAGTAGTTGGTAATAATAGTAGTAGCCCATTGTTGTACTGT
ATTGTGACGGGGGGAGCGGCGAGGAGAGGAGGATCGCGCCATGAAACCCC
GAGTGAGATGTACCTGGGCATCCTTGGGGGGAACGAGTCAATCGTGCGGC
GACGACTCGCAATATTGAAGGGGTTGTCCATGCCATCACCCTAAAGCAGC
AGAGCTGATGGTTAGTTTTGTTGTGTCGAACGGATTAAAAGGATACAAAA
CGGCCACCTTTAGAAGGAGCCAGGAGCTAGCTGCAACAATTAAGCGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig5310:1412..5310+

>mRNA_H-elongata_contig5310.12639.1 ID=mRNA_H-elongata_contig5310.12639.1|Name=mRNA_H-elongata_contig5310.12639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2844bp|location=Sequence derived from alignment at H-elongata_contig5310:1412..5310+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGACAAACGTAGGGGGAAGGCGACGGCGTCTTCGCGGCGTGGGAA
GCGGGGCAAGCAGGGAGGAGGCGTGGCGAAGGCGGTCGCCAACGGCGAAA
AAATGAAGCCCAAGGCTAGGGGGAAGGGGAAAGTAGCGCAGGCGAGAGGC
AATGGGAAGGAGAAAGCTCGAAAGGCGAAAAGTAGGAAAGGATCGATGCC
AAGAGACGAGGAAGAGGAGGAGATGAAAGAGACAGACGAGGAAGAGGAAC
AGGAGCAAGATAATTCTATGGACGACGAAGGTGGGGGGGAGGCAATGGCG
TCTTCGCGGCGCGGGAAGCGGGGAAAGCAAGGACGAGGCGAAAATCTAAA
GCCCAAGGCTAGGGGAAAGGTAGCGCAGGCAAAAGGTGACGGGAAGGAGA
AAGCTCGAGGGACGAAGGATAGGAAAGAAGCGATGTCAATTGACGAACAA
GAGGATGAGAGGGAAGAGACAGACGAGGAAGAGGAGCAGGAGAAGGTTCA
AGAGGGAGCGAGACAGGGCTCTCCTTCCAAAGGCTCTGCGATAGGGAGGT
CAGAGGAGGCCCAAGAGGGTAGGGCCAGGAAGAGGAAATATAATTTAAAA
CCGAAGGATAGAAAGATCGAAAAGAATCGGTCCAATCAGGGAGGGAAGTT
CAAGCGGAGCTTGGGCATCGCGGAGACAGGATGGAGGACAAACGTAGGGG
GAAGGCGACGGCGTCTTCGCGGCGTGGGAAGCGGGGCAAGCAGGGAGGAG
GCGTGGCGAAGGCGGTCGCCAACGGCGAAAAAATGAAGCCCAAGGCTAGG
GGGAAGGGGAAAGTAGCGCAGGCGAGAGGCAATGGGAAGGAGAAAGCTCG
AAAGGCGAAAAGTAGGAAAGGATCGATGCCAAGAGACGAGGAAGAGGAGG
AGATGAAAGAGACAGACGAGGAAGAGGAACAGGAGCAAGATAATTCTATG
GACGACGAAGGTGGGGGGGAGGCAATGGCGTCTTCGCGGCGCGGGAAGCG
GGGAAAGCAAGGACGAGGCGAAAATCTAAAGCCCAAGGCTAGGGGAAAGG
TAGCGCAGGCAAAAGGTGACGGGAAGGAGAAAGCTCGAGGGACGAAGGAT
AGGAAAGAAGCGATGTCAATTGACGAACAAGAGGATGAGAGGGAAGAGAC
AGACGAGGAAGAGGAGCAGGAGAAGGTTCAAGAGGGAGCGAGACAGGGCT
CTCCTTCCAAAGGCTCTGCGATAGGGAGGTCAGAGGAGGCCCAAGAGGGT
AGGGCCAGGAAGAGGAAATATAATTTAAAACCGAAGGATAGAAAGATCGA
AAAGAATCGGTCCAATCAGGGAGGGAAGTTCAAGCGGAGCTTGGGCATCG
CGGAGACAGGCGGGGAGGTGTTGTGGGCGTCAGACGTGACCGTGGGAAAT
ATGAGGCCCATCATCGGCGAGAGCGGGGAGGTGTTGTGGGCGTCAGACGT
GACCGTGGGAAATATGAGGCCCATCATCGGCGAGAGGTACATGTTCGTCC
ACCATTGCGACTGCAGCCACATGTTCATGGTGTCAGACATTCGCCTGGAG
GACATTCCCGAGACCCCCCTGACCTCGACTTCGGCTTCGACTCGGACCGC
CGAGCCTAACAACATACCCGCAACGGCTTTCCCAGCGGAAGAAAGGAGCA
GCCGCGTCGCGCGGCCTAACCAAGCAGGTGTTGGGCGACGCGATGCCGAC
AGGAGTTCCAGCGCTGACGTCGACGAAGAAGGGACGGAGAGAGCTATCTC
CGGGGGTAGTAAGGGTGGCGGGGAGAGGTATCCCCGTCTATCGTTCACTA
TAAAGGCTAACGTGAAGCGATGCGCTATATGCAGGACTAAGGCTGCCGAG
TTCCAAAGCTTCGGGCATCCCTTATCAGATCAGGTACATGTTCGTCCACC
ATTGCGACTGCAGCCACATGTTCATGGTGTCAGACATTCGCCTGGAGGAC
ATTCCCGAGACCCCCCTGACCTCGACTTCGGCTTCGACTCGGACCGCCGA
GCCTAACAACATACCCGCAACGGCTTTCCCAGCGGAAGAAAGGAGCAGCC
GCGTCGCGCGGCCTAACCAAGCAGGTGTTGGGCGACGCGATGCCGACAGG
AGTTCCAGCGCTGACGTCGACGAAGAAGGGACGGAGAGAGCTATCTCCGG
GGGTAGTAAGGGTGGCGGGGAGAGGTATCCCCGTCTATCGTTCACTATAA
AGGCTAACGTGAAGCGATGCGCTATATGCAGGACTAAGGCTGCCGAGTTC
CAAAGCTTCGGGCATCCCTTATCAGATCAGGTTCCCCTTGCCGCGTGCAA
CGAGTGCATCGACATGCTTTGCTACGACGAGGACCATAAGCCGCTCACCG
GGGAGATGGCCGGGGAGGATCCATTCGCGTCCCCGTCATCGGAGATGCCT
ACCGACTCCAAAGGAGGGTCCTCGTCGTTGTCTTCAGTCCAAGGCGATGA
ACCGCTTGAGTTCCCCCCGGGAAATGGCGAAGAAGGGGAAGAGGAAAATG
GAGAGGCAAACGGGGGTGGTCCAAAGGGATGGAGGCTTTACCAGCGCTTC
TTCGAATCCTGAGTTCCCCTTGCCGCGTGCAACGAGTGCATCGACATGCT
TTGCTACGACGAGGACCATAAGCCGCTCACCGGGGAGATGGCCGGGGAGG
ATCCATTCGCGTCCCCGTCATCGGAGATGCCTACCGACTCCAAAGGAGGG
TCCTCGTCGTTGTCTTCAGTCCAAGGCGATGAACCGCTTGAGTTCCCCCC
GGGAAATGGCGAAGAAGGGGAAGAGGAAAATGGAGAGGCAAACGGGGGTG
GTCCAAAGGGATGGAGGCTTTACCAGCGCTTCTTCGAATCCTGA
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