mRNA_H-elongata_contig5310.12638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5310.12638.1
Unique NamemRNA_H-elongata_contig5310.12638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5310.12638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5310contigH-elongata_contig5310:317..1146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size806
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5310.12638.1prot_H-elongata_contig5310.12638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5310 367..801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.371067-UTR-H-elongata_contig5310:316..3661622930866.371067-UTR-H-elongata_contig5310:316..366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 317..366 -
1691679603.8521397-UTR-H-elongata_contig5310:316..3661691679603.8521397-UTR-H-elongata_contig5310:316..366Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 317..366 -
1622930866.4181-UTR-H-elongata_contig5310:801..11461622930866.4181-UTR-H-elongata_contig5310:801..1146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 802..1146 -
1691679603.8874943-UTR-H-elongata_contig5310:801..11461691679603.8874943-UTR-H-elongata_contig5310:801..1146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5310 802..1146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.384038-CDS-H-elongata_contig5310:366..5571622930866.384038-CDS-H-elongata_contig5310:366..557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 367..557 -
1691679603.8618286-CDS-H-elongata_contig5310:366..5571691679603.8618286-CDS-H-elongata_contig5310:366..557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 367..557 -
1622930866.3991902-CDS-H-elongata_contig5310:581..8011622930866.3991902-CDS-H-elongata_contig5310:581..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 582..801 -
1691679603.8743553-CDS-H-elongata_contig5310:581..8011691679603.8743553-CDS-H-elongata_contig5310:581..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5310 582..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5310.12638.1

>prot_H-elongata_contig5310.12638.1 ID=prot_H-elongata_contig5310.12638.1|Name=mRNA_H-elongata_contig5310.12638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MMGQNFPPISNQRFIQGSGGGGGREGSPGQGNRIWDRLLHRRPFEALTAR
FARRPSSLSLANGVSKSWEGFIDETDAPSPIPLPLLSCCLASGGATSRVP
LGHAVSGYFRRSFFFFAAASATSRDLICRLCFRTTT*
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mRNA from alignment at H-elongata_contig5310:317..1146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5310.12638.1 ID=mRNA_H-elongata_contig5310.12638.1|Name=mRNA_H-elongata_contig5310.12638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig5310:317..1146- (Himanthalia elongata Himel1 dioecious)
CCCCTAGGTCGTCCCCTCCCCCGACCCTCACAAGCGGCCCCGGCCGCCAT
GTTCCCAACCCTCTTGCTCTTGCCTCTGGTCTCCTCCACCATGTTGCTCA
CCTTTACTCCATGACTCGAGAATACACTCTCTGCCGCTTCGGTTGCGGCC
CGAAACGCCGCCGCTACGGTCTTCCTCTCCTCCTCCGCGTTTACCTCCGT
CGCTATTTTCCCTTTGTCGGCGCTGCCTTCCCTAGACGCGGAGACGGCCG
ACGACGACGACGACATCAATAGCAGCGCCTCCGCGGTCGCATTCAACTCC
TCGGCACGTTTCACCTTGCCGGCGCTCTTGAGGAGGTCCAACTTCATGAT
GGGCCAGAATTTCCCGCCGATCTCCAACCAGCGCTTCATCCAGGGGTCCG
GGGGGGGCGGCGGCCGGGAGGGATCTCCTGGGCAGGGGAATAGAATCTGG
GACAGGCTTCTCCACAGAAGGCCGTTCGAGGCGTTGACCGCGAGGTTCGC
AAGGCGGCCCTCGTCTTTATCCCTCGCCAACGGGGTCTCCAAGTCTTGGG
AAGGATTTATAGATGGTCGGGGAGGGGGTGGGGAAAGAGAAACGGATGCC
CCTTCGCCGATACCGCTGCCGTTACTTAGCTGCTGCCTCGCCTCGGGGGG
CGCGACCTCCCGGGTGCCACTCGGACACGCCGTTTCGGGATATTTTCGGC
GTTCTTTTTTTTTCTTTGCCGCTGCGAGCGCCACCTCCCGCGACTTAATA
TGTCGCCTGTGCTTCCGCACGACCACTTGAGTGGCCTTCTTCATTTCGAC
AAGGATTTTGCGGGGAAAGACGGGTGGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig5310:317..1146-

>mRNA_H-elongata_contig5310.12638.1 ID=mRNA_H-elongata_contig5310.12638.1|Name=mRNA_H-elongata_contig5310.12638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig5310:317..1146- (Himanthalia elongata Himel1 dioecious)
ATGATGGGCCAGAATTTCCCGCCGATCTCCAACCAGCGCTTCATCCAGGG
GTCCGGGGGGGGCGGCGGCCGGGAGGGATCTCCTGGGCAGGGGAATAGAA
TCTGGGACAGGCTTCTCCACAGAAGGCCGTTCGAGGCGTTGACCGCGAGG
TTCGCAAGGCGGCCCTCGTCTTTATCCCTCGCCAACGGGGTCTCCAAGTC
TTGGGAAGGATTTATAGATGATGATGGGCCAGAATTTCCCGCCGATCTCC
AACCAGCGCTTCATCCAGGGGTCCGGGGGGGGCGGCGGCCGGGAGGGATC
TCCTGGGCAGGGGAATAGAATCTGGGACAGGCTTCTCCACAGAAGGCCGT
TCGAGGCGTTGACCGCGAGGTTCGCAAGGCGGCCCTCGTCTTTATCCCTC
GCCAACGGGGTCTCCAAGTCTTGGGAAGGATTTATAGATGAAACGGATGC
CCCTTCGCCGATACCGCTGCCGTTACTTAGCTGCTGCCTCGCCTCGGGGG
GCGCGACCTCCCGGGTGCCACTCGGACACGCCGTTTCGGGATATTTTCGG
CGTTCTTTTTTTTTCTTTGCCGCTGCGAGCGCCACCTCCCGCGACTTAAT
ATGTCGCCTGTGCTTCCGCACGACCACTTGAAAACGGATGCCCCTTCGCC
GATACCGCTGCCGTTACTTAGCTGCTGCCTCGCCTCGGGGGGCGCGACCT
CCCGGGTGCCACTCGGACACGCCGTTTCGGGATATTTTCGGCGTTCTTTT
TTTTTCTTTGCCGCTGCGAGCGCCACCTCCCGCGACTTAATATGTCGCCT
GTGCTTCCGCACGACCACTTGA
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