prot_H-elongata_contig5307.12632.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5307.12632.1
Unique Nameprot_H-elongata_contig5307.12632.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length272
Homology
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A6H5LI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI88_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 1.210e-120
Identity = 189/254 (74.41%), Postives = 213/254 (83.86%), Query Frame = 0
Query:   38 QGVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRY---------------------PRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 270
            + VDNLFVFLMTFDYFQVPLEHQGRVL+WGI GAILMRGVMIAFGVA V+RFQWIT++FAAILLVSSYKLLVE++ E+ DLSQNTLVR+S+++VGAVDEYDGDRFFT++GGKGKTVATPL LCLVCIELSDFVFAVDSIPAVLG+S+ R+                      RDPFVVF+SNLFAIM LRSIYVIIAQAV+ LPYLKPAVALVLGFVGCKML+E+  ++I TG SL VV  +I GGV LSL AR
Sbjct:   50 RSVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQWITVVFAAILLVSSYKLLVESEEEDHDLSQNTLVRMSRRLVGAVDEYDGDRFFTRLGGKGKTVATPLLLCLVCIELSDFVFAVDSIPAVLGISQARHIDLLPANFSWQMWLRMSHNTPSRDPFVVFTSNLFAIMGLRSIYVIIAQAVSQLPYLKPAVALVLGFVGCKMLLEYVHINISTGWSLFVVLSLILGGVGLSLLAR 303          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: D7G851_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G851_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 2.870e-120
Identity = 188/232 (81.03%), Postives = 209/232 (90.09%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 270
             VDNLFVFLMTFDYFQVPLEHQGRVL+WGI GAILMRGVMIAFGVA V+RFQWIT++FAAILLVSSYKLLVE++ E+ DLSQNTLVR+SK++VGAVDEYDGDRFFT++GGKGKTVATPL LCLVCIELSDFVFAVDSIPAVLG+S+     DPFVVF+SNLFAIM LRSIYVIIAQAV+ LPYLKPAVALVLGFVGCKML+E+  ++I TG SL VV  +I GGV LSL AR
Sbjct:  156 SVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQWITVVFAAILLVSSYKLLVESEEEDHDLSQNTLVRMSKRLVGAVDEYDGDRFFTRLGGKGKTVATPLLLCLVCIELSDFVFAVDSIPAVLGISQ-----DPFVVFTSNLFAIMGLRSIYVIIAQAVSQLPYLKPAVALVLGFVGCKMLLEYVHINISTGWSLFVVLSLILGGVGLSLLAR 382          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7R9UD78_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD78_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.430e-91
Identity = 151/233 (64.81%), Postives = 189/233 (81.12%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAV-DEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 270
             VDNLFVFLM F YF+VPL HQGRVL+WGI GA+LMRG MIA GVA VQ F+W+ ++FAA+L+ SS K+L   + E+EDLS N ++++SKK++G V D YDG++FFT+ GG    VATPL LCLVCIE+SDFVFAVDSIPAVLGVS      DPF+V++SN+FAI+ALRS+Y ++A+AVN+LPYLK AVALVL F+G KM++EF GV IG GTSL VV L++ GGVVLS+ AR
Sbjct:  128 SVDNLFVFLMLFAYFKVPLLHQGRVLTWGIVGAVLMRGFMIAVGVAAVQHFRWMILVFAAVLVFSSVKML-SGEEEQEDLSDNYIIKMSKKLLGTVTDRYDGEKFFTEQGGA--KVATPLLLCLVCIEISDFVFAVDSIPAVLGVS-----HDPFIVYTSNIFAIIALRSLYTLVARAVNDLPYLKHAVALVLFFIGVKMVLEFFGVDIGIGTSLTVVLLLLVGGVVLSMIAR 352          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: W7THX1_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THX1_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.480e-87
Identity = 144/231 (62.34%), Postives = 178/231 (77.06%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSE--EEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 267
             VDN+FVF+M F+YF+VP+E+Q R LSWGI GA+ MRG+MI  GVA +QRF+W+ +LFA +LL S++KLL E   E  EEDLS N LV  +KK+V AVDEYDGD FFT+  GK    ATPLF+CL+CIELSDFVFAVDSIPAVLGVSK     DP +V+SSN+FAIMALRS+Y ++A AVN+L Y+KP+VALVL FVG KM+ EF  V +    SL VV  ++GGG+ LSL
Sbjct:  149 SVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFRWVVLLFAGVLLGSAFKLLAEVGHEGGEEDLSNNLLVAWAKKLVHAVDEYDGDNFFTRRNGK--RYATPLFMCLICIELSDFVFAVDSIPAVLGVSK-----DPLIVYSSNIFAIMALRSLYTLVATAVNSLEYIKPSVALVLAFVGGKMVAEFFHVEVPISVSLAVVMSLLGGGIGLSL 372          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S3XZU5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZU5_HETAK)

HSP 1 Score: 270 bits (691), Expect = 7.350e-86
Identity = 139/234 (59.40%), Postives = 184/234 (78.63%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCARTE 272
             VDNLFVF+M FDYF+VP++ Q RVL+WGI GA+ MR VMI  GVA +Q+F+ +T+LFA IL+ S YK++ E++ EEEDL  N +++LS KMV +  +YDG++FFTK+ G     ATPL +CL+CIELSDFVFAVDSIPAV+GV+K     DPF+V+SSNLFAI ALRS+Y ++A+AV++LPYLKPAVALVLGFVGCKM  E+    +G G SL VV +++GGG+V S+ A+ +
Sbjct:  141 SVDNLFVFIMLFDYFKVPMQFQSRVLTWGIIGAMSMRLVMIVLGVAAIQKFRSVTLLFAGILIFSGYKMINESE-EEEDLEDNVIMKLSNKMVKSTTQYDGEKFFTKIDGV--KYATPLLMCLICIELSDFVFAVDSIPAVIGVTK-----DPFIVYSSNLFAIAALRSLYTLVAKAVDDLPYLKPAVALVLGFVGCKMAAEYFHYEVGIGISLGVVGILLGGGIVASVIAKNK 366          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2RH37_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH37_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.780e-85
Identity = 143/229 (62.45%), Postives = 181/229 (79.04%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 267
             VDNLFVFLM F+YFQVPL +QGRVL+WGI GA++MRG+MI  GVA VQ+F+ + +LFAAIL++S+ KL  E+D E EDLS NT++RLSK  VGAV+EYDGD+FFT + G+ +  ATPL LCLVCIELSDFVFAVDSIPAV+GVS+     D  +V+SSN+FAIM LRS+Y ++A+AV +LPYL+PAVALVL F+G KM++EF    I    SL VV  ++  G+VLSL
Sbjct:   57 SVDNLFVFLMLFNYFQVPLSYQGRVLTWGIIGAVVMRGIMIVAGVAAVQKFRMVILLFAAILMLSAVKLFFESD-EPEDLSNNTVMRLSKFAVGAVEEYDGDKFFTILDGQRR--ATPLLLCLVCIELSDFVFAVDSIPAVIGVSQ-----DLLIVYSSNIFAIMGLRSLYTLVAKAVQDLPYLRPAVALVLAFIGLKMVMEFFHYEISISLSLGVVVTLLASGIVLSL 277          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S1UHU3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHU3_9STRA)

HSP 1 Score: 263 bits (671), Expect = 9.310e-84
Identity = 140/232 (60.34%), Postives = 179/232 (77.16%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEA---DSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 267
             VDNLFVF++ FDYF+VP   Q RVL+WGI GAI MRGVMI  GVA +QRF+ + +LFA +LLV++ +L+ E+   + EEEDLS N ++ +S+KMV AVD YD ++FFT   G  +  ATPL LCLVCIELSDFVFAVDSIPAVLGVSK     DPF+V++SN+FAI ALRS+YV++A+A++++PYLKPAV LVLGFVGCKML E+    + T  SL V+  I+GG +VLSL
Sbjct:   75 SVDNLFVFILLFDYFKVPAAFQSRVLNWGIIGAIAMRGVMIVLGVAAIQRFRVVMLLFAGLLLVAAGRLVKESFAVEEEEEDLSSNWIMNVSRKMVNAVDYYDDEKFFTMSNGIQR--ATPLLLCLVCIELSDFVFAVDSIPAVLGVSK-----DPFIVYTSNIFAIAALRSLYVLVAKAIDDMPYLKPAVGLVLGFVGCKMLGEYYHYEVSTAVSLAVIMGILGGSIVLSL 299          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2Y1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S8_9STRA)

HSP 1 Score: 263 bits (672), Expect = 2.260e-83
Identity = 139/229 (60.70%), Postives = 176/229 (76.86%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 267
             VDNLFVFLM FDYF+VPL +Q R L+WGI GA+ MR VMI  GVA +Q+F+ + +LFA ILL SS+KL  E + +E DLS N ++++S KM  +VD YDG++FFTK+ G     ATPL +CLVCIELSDFVFAVDSIPAV+GV+K     DPF+V+SSN+FAIMALRS+YV++AQAV +LPYL+PAVALVL FVG KM+ EF    + T  SL VV  ++GGG+ LS+
Sbjct:  127 SVDNLFVFLMLFDYFKVPLAYQNRCLTWGIIGAMSMRLVMILLGVAAIQKFRVVILLFAGILLASSWKLFFEEEGDE-DLSDNVILKISNKMFKSVDHYDGEKFFTKVNGVRH--ATPLLMCLVCIELSDFVFAVDSIPAVIGVTK-----DPFIVYSSNMFAIMALRSLYVLVAQAVTDLPYLRPAVALVLAFVGAKMIAEFFHYELSTAISLAVVAAVLGGGIALSV 347          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2E636_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E636_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.400e-83
Identity = 144/229 (62.88%), Postives = 178/229 (77.73%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 267
             VDNLFVFLM F+YFQVPLE QGRVL+WGI GA+LMRGVMI  GVA +QRF+ + ++FAAILLVS+ KL  E+D E +DLSQN +++ SK   GAVDEYDG++F T +  + +  ATPL LCLVCIELSDFVFAVDSIPAV+GVS+     D  VV+SSNLFAIM LRS+Y ++A+AV +L YL+PAVALVL F+  KML+EF    I    SL+VV L++ GG+VLSL
Sbjct:   59 SVDNLFVFLMVFNYFQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQRFRSVILIFAAILLVSAVKLFFESD-EPQDLSQNVVMKFSKFCTGAVDEYDGEKFITVVNNRRR--ATPLLLCLVCIELSDFVFAVDSIPAVIGVSQ-----DALVVYSSNLFAIMGLRSLYTLVAKAVEDLAYLRPAVALVLCFISIKMLLEFFHYEIPIHLSLLVVALLLAGGIVLSL 279          
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A835ZA94_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA94_9STRA)

HSP 1 Score: 259 bits (663), Expect = 2.880e-83
Identity = 137/229 (59.83%), Postives = 175/229 (76.42%), Query Frame = 0
Query:   39 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 267
             VDNLFVF+M F+YF+VP  +QGRVL+WGI GA+ MR VMI  GVA +QRF+ + + FAAILL SS KLL E + E+ DLS N ++R+SK  V + D+Y+G++FFT + GK   +ATPL LCLVCIELSDFVFAVDSIPAVLGVSK     D F+V+SSN+FAI+ALRS+Y +++ A+ +LPYLKP+VALVLGFVG KM  E+    IG G SL VV +++ GGV  S+
Sbjct:   35 SVDNLFVFIMLFEYFKVPAAYQGRVLTWGIIGAVSMRAVMIVVGVAAIQRFRGVILAFAAILLASSVKLLTEKEDEDGDLSNNIVLRISKFFVRSTDKYEGEKFFTVVDGK--KMATPLLLCLVCIELSDFVFAVDSIPAVLGVSK-----DTFIVYSSNVFAILALRSLYTLVSHAITDLPYLKPSVALVLGFVGLKMCAEYFHYEIGIGVSLSVVAVLLSGGVGASI 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LI88_9PHAE1.210e-12074.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G851_ECTSI2.870e-12081.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UD78_9STRA1.430e-9164.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7THX1_9STRA3.480e-8762.34Integral membrane protein TerC n=3 Tax=Monodopsida... [more]
A0A7S3XZU5_HETAK7.350e-8659.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2RH37_9STRA2.780e-8562.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UHU3_9STRA9.310e-8460.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2Y1S8_9STRA2.260e-8360.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2E636_9STRA2.400e-8362.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZA94_9STRA2.880e-8359.83Integral membrane protein TerC family-domain-conta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022369Integral membrane protein TerC, riboswitch-linkedTIGRFAMTIGR03718TIGR03718coord: 39..270
e-value: 1.8E-76
score: 255.5
IPR022369Integral membrane protein TerC, riboswitch-linkedPANTHERPTHR30238:SF0THYLAKOID MEMBRANE PROTEIN TERC, CHLOROPLASTICcoord: 39..270
IPR005496Integral membrane protein TerCPFAMPF03741TerCcoord: 39..240
e-value: 1.5E-43
score: 148.6
NoneNo IPR availablePANTHERPTHR30238MEMBRANE BOUND PREDICTED REDOX MODULATORcoord: 39..270
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 247..251
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 252..269
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 110..152
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 173..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..213
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 270..272
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..64
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..224
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 225..246
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.69
NoneNo IPR availableTMHMMTMhelixcoord: 194..216
NoneNo IPR availableTMHMMTMhelixcoord: 152..173
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 92..109
NoneNo IPR availableTMHMMTMhelixcoord: 246..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5307contigH-elongata_contig5307:1907..3662 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5307.12632.1mRNA_H-elongata_contig5307.12632.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5307 1907..3662 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5307.12632.1 ID=prot_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
VFVFVLSKYFLVALLLISDHATVNSAYSPRRCAVAIQQGVDNLFVFLMTF
DYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAIL
LVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKG
KTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLF
AIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGT
SLVVVTLIIGGGVVLSLCARTE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022369Integral_membrane_TerC_rswitch
IPR005496Integral_membrane_TerC