mRNA_H-elongata_contig5307.12632.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A6H5LI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI88_9PHAE) HSP 1 Score: 357 bits (916), Expect = 1.210e-120 Identity = 189/254 (74.41%), Postives = 213/254 (83.86%), Query Frame = 1
Query: 112 QGVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRY---------------------PRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 810
+ VDNLFVFLMTFDYFQVPLEHQGRVL+WGI GAILMRGVMIAFGVA V+RFQWIT++FAAILLVSSYKLLVE++ E+ DLSQNTLVR+S+++VGAVDEYDGDRFFT++GGKGKTVATPL LCLVCIELSDFVFAVDSIPAVLG+S+ R+ RDPFVVF+SNLFAIM LRSIYVIIAQAV+ LPYLKPAVALVLGFVGCKML+E+ ++I TG SL VV +I GGV LSL AR
Sbjct: 50 RSVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQWITVVFAAILLVSSYKLLVESEEEDHDLSQNTLVRMSRRLVGAVDEYDGDRFFTRLGGKGKTVATPLLLCLVCIELSDFVFAVDSIPAVLGISQARHIDLLPANFSWQMWLRMSHNTPSRDPFVVFTSNLFAIMGLRSIYVIIAQAVSQLPYLKPAVALVLGFVGCKMLLEYVHINISTGWSLFVVLSLILGGVGLSLLAR 303
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: D7G851_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G851_ECTSI) HSP 1 Score: 359 bits (921), Expect = 2.870e-120 Identity = 188/232 (81.03%), Postives = 209/232 (90.09%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 810
VDNLFVFLMTFDYFQVPLEHQGRVL+WGI GAILMRGVMIAFGVA V+RFQWIT++FAAILLVSSYKLLVE++ E+ DLSQNTLVR+SK++VGAVDEYDGDRFFT++GGKGKTVATPL LCLVCIELSDFVFAVDSIPAVLG+S+ DPFVVF+SNLFAIM LRSIYVIIAQAV+ LPYLKPAVALVLGFVGCKML+E+ ++I TG SL VV +I GGV LSL AR
Sbjct: 156 SVDNLFVFLMTFDYFQVPLEHQGRVLTWGIVGAILMRGVMIAFGVAAVKRFQWITVVFAAILLVSSYKLLVESEEEDHDLSQNTLVRMSKRLVGAVDEYDGDRFFTRLGGKGKTVATPLLLCLVCIELSDFVFAVDSIPAVLGISQ-----DPFVVFTSNLFAIMGLRSIYVIIAQAVSQLPYLKPAVALVLGFVGCKMLLEYVHINISTGWSLFVVLSLILGGVGLSLLAR 382
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7R9UD78_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD78_9STRA) HSP 1 Score: 284 bits (727), Expect = 1.430e-91 Identity = 151/233 (64.81%), Postives = 189/233 (81.12%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAV-DEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCAR 810
VDNLFVFLM F YF+VPL HQGRVL+WGI GA+LMRG MIA GVA VQ F+W+ ++FAA+L+ SS K+L + E+EDLS N ++++SKK++G V D YDG++FFT+ GG VATPL LCLVCIE+SDFVFAVDSIPAVLGVS DPF+V++SN+FAI+ALRS+Y ++A+AVN+LPYLK AVALVL F+G KM++EF GV IG GTSL VV L++ GGVVLS+ AR
Sbjct: 128 SVDNLFVFLMLFAYFKVPLLHQGRVLTWGIVGAVLMRGFMIAVGVAAVQHFRWMILVFAAVLVFSSVKML-SGEEEQEDLSDNYIIKMSKKLLGTVTDRYDGEKFFTEQGGA--KVATPLLLCLVCIEISDFVFAVDSIPAVLGVS-----HDPFIVYTSNIFAIIALRSLYTLVARAVNDLPYLKHAVALVLFFIGVKMVLEFFGVDIGIGTSLTVVLLLLVGGVVLSMIAR 352
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: W7THX1_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THX1_9STRA) HSP 1 Score: 273 bits (699), Expect = 3.480e-87 Identity = 144/231 (62.34%), Postives = 178/231 (77.06%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSE--EEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
VDN+FVF+M F+YF+VP+E+Q R LSWGI GA+ MRG+MI GVA +QRF+W+ +LFA +LL S++KLL E E EEDLS N LV +KK+V AVDEYDGD FFT+ GK ATPLF+CL+CIELSDFVFAVDSIPAVLGVSK DP +V+SSN+FAIMALRS+Y ++A AVN+L Y+KP+VALVL FVG KM+ EF V + SL VV ++GGG+ LSL
Sbjct: 149 SVDNIFVFIMLFEYFKVPIEYQSRALSWGIMGAVAMRGIMIFVGVAAIQRFRWVVLLFAGVLLGSAFKLLAEVGHEGGEEDLSNNLLVAWAKKLVHAVDEYDGDNFFTRRNGK--RYATPLFMCLICIELSDFVFAVDSIPAVLGVSK-----DPLIVYSSNIFAIMALRSLYTLVATAVNSLEYIKPSVALVLAFVGGKMVAEFFHVEVPISVSLAVVMSLLGGGIGLSL 372
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S3XZU5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZU5_HETAK) HSP 1 Score: 270 bits (691), Expect = 7.350e-86 Identity = 139/234 (59.40%), Postives = 184/234 (78.63%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSLCARTE 816
VDNLFVF+M FDYF+VP++ Q RVL+WGI GA+ MR VMI GVA +Q+F+ +T+LFA IL+ S YK++ E++ EEEDL N +++LS KMV + +YDG++FFTK+ G ATPL +CL+CIELSDFVFAVDSIPAV+GV+K DPF+V+SSNLFAI ALRS+Y ++A+AV++LPYLKPAVALVLGFVGCKM E+ +G G SL VV +++GGG+V S+ A+ +
Sbjct: 141 SVDNLFVFIMLFDYFKVPMQFQSRVLTWGIIGAMSMRLVMIVLGVAAIQKFRSVTLLFAGILIFSGYKMINESE-EEEDLEDNVIMKLSNKMVKSTTQYDGEKFFTKIDGV--KYATPLLMCLICIELSDFVFAVDSIPAVIGVTK-----DPFIVYSSNLFAIAALRSLYTLVAKAVDDLPYLKPAVALVLGFVGCKMAAEYFHYEVGIGISLGVVGILLGGGIVASVIAKNK 366
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2RH37_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH37_9STRA) HSP 1 Score: 266 bits (681), Expect = 2.780e-85 Identity = 143/229 (62.45%), Postives = 181/229 (79.04%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
VDNLFVFLM F+YFQVPL +QGRVL+WGI GA++MRG+MI GVA VQ+F+ + +LFAAIL++S+ KL E+D E EDLS NT++RLSK VGAV+EYDGD+FFT + G+ + ATPL LCLVCIELSDFVFAVDSIPAV+GVS+ D +V+SSN+FAIM LRS+Y ++A+AV +LPYL+PAVALVL F+G KM++EF I SL VV ++ G+VLSL
Sbjct: 57 SVDNLFVFLMLFNYFQVPLSYQGRVLTWGIIGAVVMRGIMIVAGVAAVQKFRMVILLFAAILMLSAVKLFFESD-EPEDLSNNTVMRLSKFAVGAVEEYDGDKFFTILDGQRR--ATPLLLCLVCIELSDFVFAVDSIPAVIGVSQ-----DLLIVYSSNIFAIMGLRSLYTLVAKAVQDLPYLRPAVALVLAFIGLKMVMEFFHYEISISLSLGVVVTLLASGIVLSL 277
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S1UHU3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHU3_9STRA) HSP 1 Score: 263 bits (671), Expect = 9.310e-84 Identity = 140/232 (60.34%), Postives = 179/232 (77.16%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEA---DSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
VDNLFVF++ FDYF+VP Q RVL+WGI GAI MRGVMI GVA +QRF+ + +LFA +LLV++ +L+ E+ + EEEDLS N ++ +S+KMV AVD YD ++FFT G + ATPL LCLVCIELSDFVFAVDSIPAVLGVSK DPF+V++SN+FAI ALRS+YV++A+A++++PYLKPAV LVLGFVGCKML E+ + T SL V+ I+GG +VLSL
Sbjct: 75 SVDNLFVFILLFDYFKVPAAFQSRVLNWGIIGAIAMRGVMIVLGVAAIQRFRVVMLLFAGLLLVAAGRLVKESFAVEEEEEDLSSNWIMNVSRKMVNAVDYYDDEKFFTMSNGIQR--ATPLLLCLVCIELSDFVFAVDSIPAVLGVSK-----DPFIVYTSNIFAIAALRSLYVLVAKAIDDMPYLKPAVGLVLGFVGCKMLGEYYHYEVSTAVSLAVIMGILGGSIVLSL 299
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2Y1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S8_9STRA) HSP 1 Score: 263 bits (672), Expect = 2.260e-83 Identity = 139/229 (60.70%), Postives = 176/229 (76.86%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
VDNLFVFLM FDYF+VPL +Q R L+WGI GA+ MR VMI GVA +Q+F+ + +LFA ILL SS+KL E + +E DLS N ++++S KM +VD YDG++FFTK+ G ATPL +CLVCIELSDFVFAVDSIPAV+GV+K DPF+V+SSN+FAIMALRS+YV++AQAV +LPYL+PAVALVL FVG KM+ EF + T SL VV ++GGG+ LS+
Sbjct: 127 SVDNLFVFLMLFDYFKVPLAYQNRCLTWGIIGAMSMRLVMILLGVAAIQKFRVVILLFAGILLASSWKLFFEEEGDE-DLSDNVILKISNKMFKSVDHYDGEKFFTKVNGVRH--ATPLLMCLVCIELSDFVFAVDSIPAVIGVTK-----DPFIVYSSNMFAIMALRSLYVLVAQAVTDLPYLRPAVALVLAFVGAKMIAEFFHYELSTAISLAVVAAVLGGGIALSV 347
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A7S2E636_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E636_9STRA) HSP 1 Score: 262 bits (669), Expect = 2.400e-83 Identity = 144/229 (62.88%), Postives = 178/229 (77.73%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
VDNLFVFLM F+YFQVPLE QGRVL+WGI GA+LMRGVMI GVA +QRF+ + ++FAAILLVS+ KL E+D E +DLSQN +++ SK GAVDEYDG++F T + + + ATPL LCLVCIELSDFVFAVDSIPAV+GVS+ D VV+SSNLFAIM LRS+Y ++A+AV +L YL+PAVALVL F+ KML+EF I SL+VV L++ GG+VLSL
Sbjct: 59 SVDNLFVFLMVFNYFQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQRFRSVILIFAAILLVSAVKLFFESD-EPQDLSQNVVMKFSKFCTGAVDEYDGEKFITVVNNRRR--ATPLLLCLVCIELSDFVFAVDSIPAVIGVSQ-----DALVVYSSNLFAIMGLRSLYTLVAKAVEDLAYLRPAVALVLCFISIKMLLEFFHYEIPIHLSLLVVALLLAGGIVLSL 279
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Match: A0A835ZA94_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA94_9STRA) HSP 1 Score: 259 bits (663), Expect = 2.880e-83 Identity = 137/229 (59.83%), Postives = 175/229 (76.42%), Query Frame = 1
Query: 115 GVDNLFVFLMTFDYFQVPLEHQGRVLSWGIAGAILMRGVMIAFGVAVVQRFQWITILFAAILLVSSYKLLVEADSEEEDLSQNTLVRLSKKMVGAVDEYDGDRFFTKMGGKGKTVATPLFLCLVCIELSDFVFAVDSIPAVLGVSKVRYPRDPFVVFSSNLFAIMALRSIYVIIAQAVNNLPYLKPAVALVLGFVGCKMLVEFGGVHIGTGTSLVVVTLIIGGGVVLSL 801
VDNLFVF+M F+YF+VP +QGRVL+WGI GA+ MR VMI GVA +QRF+ + + FAAILL SS KLL E + E+ DLS N ++R+SK V + D+Y+G++FFT + GK +ATPL LCLVCIELSDFVFAVDSIPAVLGVSK D F+V+SSN+FAI+ALRS+Y +++ A+ +LPYLKP+VALVLGFVG KM E+ IG G SL VV +++ GGV S+
Sbjct: 35 SVDNLFVFIMLFEYFKVPAAYQGRVLTWGIIGAVSMRAVMIVVGVAAIQRFRGVILAFAAILLASSVKLLTEKEDEDGDLSNNIVLRISKFFVRSTDKYEGEKFFTVVDGK--KMATPLLLCLVCIELSDFVFAVDSIPAVLGVSK-----DTFIVYSSNVFAILALRSLYTLVSHAITDLPYLKPSVALVLGFVGLKMCAEYFHYEIGIGVSLSVVAVLLSGGVGASI 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5307.12632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5307.12632.1 >prot_H-elongata_contig5307.12632.1 ID=prot_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp VFVFVLSKYFLVALLLISDHATVNSAYSPRRCAVAIQQGVDNLFVFLMTFback to top mRNA from alignment at H-elongata_contig5307:1907..3662+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5307.12632.1 ID=mRNA_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1756bp|location=Sequence derived from alignment at H-elongata_contig5307:1907..3662+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5307:1907..3662+ >mRNA_H-elongata_contig5307.12632.1 ID=mRNA_H-elongata_contig5307.12632.1|Name=mRNA_H-elongata_contig5307.12632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig5307:1907..3662+ (Himanthalia elongata Himel1 dioecious)back to top |