mRNA_H-elongata_contig116053.1263.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116053.1263.1
Unique NamemRNA_H-elongata_contig116053.1263.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.830e-19
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDY-INPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            F+++GG ++  S+G N Y +I  DDCTR+  V F+K KS+  AA    + DY        +    TD GGEF  +F     R  I  E TPP+TP+YNGV ERAL LL + A+A
Sbjct:  198 FLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-16
Identity = 46/103 (44.66%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   34 SLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDY-INPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            S+G N Y +I  DDCTR+  V F+K KS+  AA    + DY        +    TD GGEF  +F     R  I  E TPP+TP+YNGV ERAL LL + A+A
Sbjct:    5 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALA 107
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.540e-16
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDYINPQKLSIKCVW-TDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            ++D+GG +K  S+G N Y +I  DD +R+  V F+K KS+        + DY         C+  TD GGEF  +F     R  I  E TPP TP+YNGV ERAL L+ + A+A
Sbjct:   25 YLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.180e-15
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDYINPQ-KLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            ++D+GG +K  S+G++ Y ++  DD +R+  V F+K KS+        + DY   +    +    TD+GGEF  +F     R  I  E TPP TP+YN V ERAL L+ + A+A
Sbjct:  219 YLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAALA 332
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.660e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  737 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 851
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  572 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 686
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  585 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 699
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALF-YLIEDYINPQKLSIKCVWTDNGGEF-DTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            FVD+ G  +  SLG   Y +I  DD TR+  V F+K KS+   A   YL E+  N     +  V +DNGGEF + +F R   +  I  E TP  +P+YNGV ERAL L+++ A+A
Sbjct:  728 FVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALA 842
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.600e-15
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDY-INPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELL 321
            ++D+GG +K  S+G N Y +I  DD +R+  V F+K KS+    L   + DY        +    TD GGEF  +F     R  I  E TPP TP+YNGV ERAL  L
Sbjct:  649 YLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756
[Close]
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.670e-15
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:    1 FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIEDYIN---PQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVVERALELLREKAIA 339
            ++D+GG +K  S+G N Y +I  DDC+R+  V F    S+        + DY     P K+ I    TD GGEF  +F     R  I  E TPP TP+YNGV ERAL L+ + A+A
Sbjct:  403 YLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADYRTKGVPCKVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 515
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116053.1263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE1.830e-1942.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE1.370e-1644.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE1.540e-1640.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE1.180e-1536.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE2.660e-1541.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE2.670e-1541.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.670e-1541.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.670e-1541.74Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JM30_9PHAE3.600e-1540.74Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIN8_9PHAE8.670e-1540.52Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116053contigH-elongata_contig116053:1628..1969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog67593.Physo140550
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.7934544-CDS-H-elongata_contig116053:1627..19691622929673.7934544-CDS-H-elongata_contig116053:1627..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116053 1628..1969 +
1691679114.596936-CDS-H-elongata_contig116053:1627..19691691679114.596936-CDS-H-elongata_contig116053:1627..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116053 1628..1969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116053.1263.1prot_H-elongata_contig116053.1263.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116053 1628..1969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116053.1263.1

>prot_H-elongata_contig116053.1263.1 ID=prot_H-elongata_contig116053.1263.1|Name=mRNA_H-elongata_contig116053.1263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
FVDVGGSIKHLSLGENSYVVIFVDDCTRFKVVKFVKRKSEKTAALFYLIE
DYINPQKLSIKCVWTDNGGEFDTKFQRELDRRNITHEHTPPDTPQYNGVV
ERALELLREKAIAL
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mRNA from alignment at H-elongata_contig116053:1628..1969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116053.1263.1 ID=mRNA_H-elongata_contig116053.1263.1|Name=mRNA_H-elongata_contig116053.1263.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig116053:1628..1969+ (Himanthalia elongata Himel1 dioecious)
TTTGTCGATGTGGGTGGGTCGATAAAGCACTTGAGTCTCGGCGAAAACAG
CTACGTCGTCATTTTCGTGGACGATTGCACCCGTTTCAAGGTGGTAAAGT
TCGTTAAAAGGAAGAGTGAAAAAACGGCCGCGCTTTTCTATTTGATTGAA
GATTATATCAACCCGCAGAAGCTGTCGATCAAGTGCGTATGGACAGATAA
TGGTGGCGAGTTCGACACGAAATTTCAGCGCGAACTAGACCGGCGCAACA
TCACGCACGAGCATACCCCGCCAGACACGCCACAGTACAACGGGGTGGTC
GAACGCGCGCTTGAACTGTTACGAGAAAAGGCGATCGCCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig116053:1628..1969+

>mRNA_H-elongata_contig116053.1263.1 ID=mRNA_H-elongata_contig116053.1263.1|Name=mRNA_H-elongata_contig116053.1263.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig116053:1628..1969+ (Himanthalia elongata Himel1 dioecious)
TTTGTCGATGTGGGTGGGTCGATAAAGCACTTGAGTCTCGGCGAAAACAG
CTACGTCGTCATTTTCGTGGACGATTGCACCCGTTTCAAGGTGGTAAAGT
TCGTTAAAAGGAAGAGTGAAAAAACGGCCGCGCTTTTCTATTTGATTGAA
GATTATATCAACCCGCAGAAGCTGTCGATCAAGTGCGTATGGACAGATAA
TGGTGGCGAGTTCGACACGAAATTTCAGCGCGAACTAGACCGGCGCAACA
TCACGCACGAGCATACCCCGCCAGACACGCCACAGTACAACGGGGTGGTC
GAACGCGCGCTTGAACTGTTACGAGAAAAGGCGATCGCCCTGTTTGTCGA
TGTGGGTGGGTCGATAAAGCACTTGAGTCTCGGCGAAAACAGCTACGTCG
TCATTTTCGTGGACGATTGCACCCGTTTCAAGGTGGTAAAGTTCGTTAAA
AGGAAGAGTGAAAAAACGGCCGCGCTTTTCTATTTGATTGAAGATTATAT
CAACCCGCAGAAGCTGTCGATCAAGTGCGTATGGACAGATAATGGTGGCG
AGTTCGACACGAAATTTCAGCGCGAACTAGACCGGCGCAACATCACGCAC
GAGCATACCCCGCCAGACACGCCACAGTACAACGGGGTGGTCGAACGCGC
GCTTGAACTGTTACGAGAAAAGGCGATCGCCCTG
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