mRNA_H-elongata_contig52968.12622.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52968.12622.1
Unique NamemRNA_H-elongata_contig52968.12622.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52968.12622.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.060e-28
Identity = 60/109 (55.05%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    7 VAKREQRDMSLAEREQCSLLDNFWGLPANWARQQKAMVEMETEDHYSEALRAKIKEEERYALWDEEDLKMRETRNVVKEILENAALEEYLEMFYSAPSADLVIDYRWPT 333
            VA+ E+++MS AE EQC+L D+FWGL AN   Q +A   ME ED  S  +RA+IK+EERY LW++ED + RETR+ V+E LE+ A  EYLE+FY+APSA++ ++Y WPT
Sbjct:  511 VAEMERQNMSKAEGEQCAL-DDFWGLVANQVEQAEATAAMEREDLLSAQIRARIKKEERYRLWEQEDRRKRETRSAVREHLEDHARREYLEIFYNAPSAEMAMNYTWPT 618
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BLAST of mRNA_H-elongata_contig52968.12622.1 vs. uniprot
Match: A0A6H5JU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU28_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.050e-26
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    7 VAKREQRDMSLAEREQCSLLDNFWGLPANWARQQKAMVEMETEDHYSEALRAKIKEEERYALWDEEDLKMRETRNVVKEILENAALEEYLE--MFYSAPSADLVIDYRWPT 333
            VA+ E+++MS AE EQC+L D+FWGL AN   Q +A   ME ED  S  +RA+IK+EERY LW++ED + RETR+ V+E LE+ A  EYLE  +FY+APSA++ ++Y WPT
Sbjct:   91 VAEMERQNMSKAEGEQCAL-DDFWGLVANQVEQAEATAAMEREDLLSAQIRARIKKEERYRLWEQEDRRKRETRSAVREHLEDHARREYLESEIFYNAPSAEMAMNYTWPT 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52968.12622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFK6_ECTSI9.060e-2855.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU28_9PHAE5.050e-2654.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52968contigH-elongata_contig52968:2396..3303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.5e-22
Seed eggNOG ortholog2880.D8LFK6
EggNOG OGs29WS3@1,2RXQ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52968.12622.1prot_H-elongata_contig52968.12622.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52968 2396..3273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.7188451-CDS-H-elongata_contig52968:2395..24491622930864.7188451-CDS-H-elongata_contig52968:2395..2449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 2396..2449 -
1691679603.1519222-CDS-H-elongata_contig52968:2395..24491691679603.1519222-CDS-H-elongata_contig52968:2395..2449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 2396..2449 -
1622930864.7358313-CDS-H-elongata_contig52968:3024..32731622930864.7358313-CDS-H-elongata_contig52968:3024..3273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 3025..3273 -
1691679603.1630986-CDS-H-elongata_contig52968:3024..32731691679603.1630986-CDS-H-elongata_contig52968:3024..3273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52968 3025..3273 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.749416-UTR-H-elongata_contig52968:3273..33031622930864.749416-UTR-H-elongata_contig52968:3273..3303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52968 3274..3303 -
1691679603.1739714-UTR-H-elongata_contig52968:3273..33031691679603.1739714-UTR-H-elongata_contig52968:3273..3303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52968 3274..3303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52968.12622.1

>prot_H-elongata_contig52968.12622.1 ID=prot_H-elongata_contig52968.12622.1|Name=mRNA_H-elongata_contig52968.12622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MSLAEREQCSLLDNFWGLPANWARQQKAMVEMETEDHYSEALRAKIKEEE
RYALWDEEDLKMRETRNVVKEILENAALEEYLEMFYSAPSADLVIDYRWP
T
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mRNA from alignment at H-elongata_contig52968:2396..3303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52968.12622.1 ID=mRNA_H-elongata_contig52968.12622.1|Name=mRNA_H-elongata_contig52968.12622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=908bp|location=Sequence derived from alignment at H-elongata_contig52968:2396..3303- (Himanthalia elongata Himel1 dioecious)
AAGCTCGTCGCCAAGAGGGAGCAACGCGATATGAGCCTCGCCGAGCGCGA
GCAGTGTTCCTTGTTGGACAACTTCTGGGGGCTGCCTGCGAACTGGGCCC
GGCAGCAAAAGGCGATGGTGGAAATGGAGACGGAAGATCACTATAGCGAG
GCCCTTCGGGCGAAGATTAAGGAGGAGGAGAGATATGCGCTGTGGGATGA
GGAGGATCTGAAGATGAGGGAAACGAGGAACGTTGTGAAGGAAATTCTCG
AGAACGCTGCACTGGAGGAATATCTAGAGGTCAGGTTTTGCCGACAACTG
CGGAAGCATGAAGAAGGTGGTAGCGCGCATCTAAAACAACACGTACTTCA
ACATAATAATTATGTTTTTTTTCGAATACTGCAACCCCCATGTAGCCCCA
CGTTCGCTTCCAGACAGTATAGTTGTTCTATATATACACATGGCTCAGTC
ACTACGTGGCACGCAGGACGAATTGCTTTGAAAAGGTGTCTAAAACGGGC
ACCGCGGGTTCCACACATACAAACCCAATATCACGACTTCTTAGGAGCTC
CAAAACACTAGCGAGGATTATTCAATACTACCAGTATGTAATATATCATC
GACAACTTGTTGGATGTTTTTCAAGACGTGCCCGCGTGGGGCTGGTGTTT
GGCCTAAATATTATAGTAACCTGGATATTAATATTCTATAATGATTGTGT
GTCCACCTGCTTGTTCTTACACACGATCTTTCGTAAGCATCACGACGAGC
CGTTGCATTCAACACGTCTCCGCCGATCCCTAGCGCTGCAGCGTTACTAT
CCCTGGGGTTCTCTGAACATGACACACCGGCAACCAACGGTTTTTTCACG
GTAGATGTTCTACAGTGCGCCATCAGCCGACTTGGTCATCGACTACAGGT
GGCCAACG
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Coding sequence (CDS) from alignment at H-elongata_contig52968:2396..3303-

>mRNA_H-elongata_contig52968.12622.1 ID=mRNA_H-elongata_contig52968.12622.1|Name=mRNA_H-elongata_contig52968.12622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig52968:2396..3303- (Himanthalia elongata Himel1 dioecious)
ATGAGCCTCGCCGAGCGCGAGCAGTGTTCCTTGTTGGACAACTTCTGGGG
GCTGCCTGCGAACTGGGCCCGGCAGCAAAAGGCGATGGTGGAAATGGAGA
CGGAAGATCACTATAGCGAGGCCCTTCGGGCGAAGATTAAGGAGGAGGAG
AGATATGCGCTGTGGGATGAGGAGGATCTGAAGATGAGGGAAACGAGGAA
CGTTGTGAAGGAAATTCTCGAGAACGCTGCACTGGAGGAATATCTAGAGA
TGAGCCTCGCCGAGCGCGAGCAGTGTTCCTTGTTGGACAACTTCTGGGGG
CTGCCTGCGAACTGGGCCCGGCAGCAAAAGGCGATGGTGGAAATGGAGAC
GGAAGATCACTATAGCGAGGCCCTTCGGGCGAAGATTAAGGAGGAGGAGA
GATATGCGCTGTGGGATGAGGAGGATCTGAAGATGAGGGAAACGAGGAAC
GTTGTGAAGGAAATTCTCGAGAACGCTGCACTGGAGGAATATCTAGAGAT
GTTCTACAGTGCGCCATCAGCCGACTTGGTCATCGACTACAGGTGGCCAA
CGATGTTCTACAGTGCGCCATCAGCCGACTTGGTCATCGACTACAGGTGG
CCAACG
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