mRNA_H-elongata_contig52922.12616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52922.12616.1
Unique NamemRNA_H-elongata_contig52922.12616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig52922.12616.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.280e-20
Identity = 44/50 (88.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 AADAYSKGQQIKWASIVKEVPELLGRSPDAARNQHKMMGRPRAVFKSFTR 150
            AA+AY+ G+QIKWASIVK+VPEL+GRSPDAARNQHKMMGRPRAVFKSFTR
Sbjct:  251 AANAYN-GRQIKWASIVKDVPELIGRSPDAARNQHKMMGRPRAVFKSFTR 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52922.12616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFS7_9PHAE4.280e-2088.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52922contigH-elongata_contig52922:2518..3811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-20_001560.1
Exons2
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.2599545-CDS-H-elongata_contig52922:2517..25901622930864.2599545-CDS-H-elongata_contig52922:2517..2590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52922 2518..2590 +
1691679602.9894924-CDS-H-elongata_contig52922:2517..25901691679602.9894924-CDS-H-elongata_contig52922:2517..2590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52922 2518..2590 +
1622930864.2789133-CDS-H-elongata_contig52922:3734..38111622930864.2789133-CDS-H-elongata_contig52922:3734..3811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52922 3735..3811 +
1691679602.9988933-CDS-H-elongata_contig52922:3734..38111691679602.9988933-CDS-H-elongata_contig52922:3734..3811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52922 3735..3811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52922.12616.1prot_H-elongata_contig52922.12616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52922 2518..3811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52922.12616.1

>prot_H-elongata_contig52922.12616.1 ID=prot_H-elongata_contig52922.12616.1|Name=mRNA_H-elongata_contig52922.12616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
AADAYSKGQQIKWASIVKEVPELLGRSPDAARNQHKMMGRPRAVFKSFTR
back to top

mRNA from alignment at H-elongata_contig52922:2518..3811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52922.12616.1 ID=mRNA_H-elongata_contig52922.12616.1|Name=mRNA_H-elongata_contig52922.12616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1294bp|location=Sequence derived from alignment at H-elongata_contig52922:2518..3811+ (Himanthalia elongata Himel1 dioecious)
GCTGCGGACGCGTACTCGAAGGGTCAGCAGATCAAATGGGCCAGCATCGT
GAAGGAGGTGCCGGAGCTCTTGGGTAAGATGTAAGATATGTTGTAGTCTA
GTGTAGTGTAGTGTAGTGTAAGGTCATATCTTACATCTTACTGTGGTGGT
CAGCTGGGCAGAATAATAACCAACCCTGTGCCCGTTTGCGCCTGACAAAA
AATGGTCTCGCGAGACGGGTTCGGCTTTTCCATTACAAAGTACATTGGGA
TACTGCAGTGTGTAGTATCGTATAATATATAGTATATATTAGTTTGTTAG
TATGGTGTATAGTGTAGCCTCGAAGAGACTGGGGGATGTTGCCTAGTAAA
TATATATATATAATATATATATGTAATGTAGTGTAGGGTAATGTGTACTA
TAAATAGAGTGTAATGTGGTAAGGTGTACCAGGTACGGTGTAGGGTAGTG
TATTGCAGTATATATATAAATGTAATGTAGTATGTAGGGTAATGTGTACT
ATAAATAGAGTGTAATGTGGTAAGGTGTACCATGTACGGTGTAGGGTAGT
GTATAGTGTATTATATCAAATGAGGGGTAATGTGTACTATAAATATAGTA
TAATGTGGTAAGGTGTACCATGTACGGTATAGGGTAGTGTATAGTGTATA
GTGTGTAGGGTATTATATCAAATGAGGGGAGCTAAAGAAGCCAGTGCCAT
CTGCCTACCTTTATATATTTAGTACTAGACATTATGGCGTTATTTGGTTG
AAACACCGCCCCGGCTAGGTTTAGCTATTCATAGATTGATTGAAGAAGAA
AAGGTAAAAGGAACAGGCGAAGAAGAAAGGGTAGAAACCAAGGCCCTTTA
AACGAAATGCATGCTTTTCGTTCTCTCTCTCACCCCCCTCCACCCCCCCT
CTATGCCATTGTTTTTTGCTTTGTTTTTTCGAATGCTGGTGTGCTGCTAT
CCATAGTTTGGCGTTGCTTGTTTTGCTTTGATTGTGTCTATTCTTTTTTT
CTCTGTTCTGTCTCGCTTTTTTCCTTTTTCTTTTTCTTTGAAAACACAGC
GTTGCTTTCCGTTTTCTGTTTGTCTTTCCTACATTTGTCTTAAGTGTGTT
GTGCTGCTGCTGCTGCTATCTCTGTAGCTTCTCTCGGTATCTTTTAGATC
TACTTTTTTATTCGTTTGCTGGTGTGTGTTGCATTGCCATCGGCCTTGCC
ATTATCCATTGTCGCAGGCCGTAGTCCAGACGCCGCTAGGAACCAGCACA
AGATGATGGGAAGGCCCCGTGCCGTGTTCAAGTCCTTTACGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig52922:2518..3811+

>mRNA_H-elongata_contig52922.12616.1 ID=mRNA_H-elongata_contig52922.12616.1|Name=mRNA_H-elongata_contig52922.12616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig52922:2518..3811+ (Himanthalia elongata Himel1 dioecious)
GCTGCGGACGCGTACTCGAAGGGTCAGCAGATCAAATGGGCCAGCATCGT
GAAGGAGGTGCCGGAGCTCTTGGGCTGCGGACGCGTACTCGAAGGGTCAG
CAGATCAAATGGGCCAGCATCGTGAAGGAGGTGCCGGAGCTCTTGGGCCG
TAGTCCAGACGCCGCTAGGAACCAGCACAAGATGATGGGAAGGCCCCGTG
CCGTGTTCAAGTCCTTTACGAGGGCCGTAGTCCAGACGCCGCTAGGAACC
AGCACAAGATGATGGGAAGGCCCCGTGCCGTGTTCAAGTCCTTTACGAGG
back to top