mRNA_H-elongata_contig52898.12614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52898.12614.1
Unique NamemRNA_H-elongata_contig52898.12614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: D8LRQ2_ECTSI (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ2_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.200e-45
Identity = 78/86 (90.70%), Postives = 78/86 (90.70%), Query Frame = 1
Query:    1 QVYISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGEK------PKFAISDNLGFGGHNAALTFK 240
            QVYISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGEK      PK AISDNLGFGGHNAAL FK
Sbjct:  400 QVYISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGEKVVPAVKPKVAISDNLGFGGHNAALAFK 485          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A836CDS1_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDS1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.830e-34
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 QVYISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPG------EKPKFAISDNLGFGGHNAALTFK 240
            + YISSTKSMMGHTLGAAGGLEA+VCAQVL+ GEIPPT NL+NP LE GCDLNYCP       EK ++AIS+NLGFGGHNA + FK
Sbjct:  381 KAYISSTKSMMGHTLGAAGGLEAVVCAQVLKSGEIPPTLNLDNPDLEAGCDLNYCPHTKVVPTEKIRYAISNNLGFGGHNACVAFK 466          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S1XSM4_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSM4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.230e-31
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGEKP-------KFAISDNLGFGGHNAALTFK 240
            ISSTKSMMGHTLGAAGGLEA+V A+VL  G+IPPT NLENP LE GCDL+YCPGE         K A+SDNLGFGGHNAA+ FK
Sbjct:  372 ISSTKSMMGHTLGAAGGLEAVVLAKVLETGKIPPTANLENPDLEAGCDLDYCPGEMQQVDPKSIKAALSDNLGFGGHNAAVLFK 455          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S0M182_9CRYP (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M182_9CRYP)

HSP 1 Score: 120 bits (301), Expect = 1.990e-30
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPG-----EKPKFAISDNLGFGGHNAALTFK 240
            ISSTKSMMGHTLGAAGGLEAIVCA+V++ G +PPT NLE P L+DGCDL+Y P      E+ + AISDNLGFGGHNAAL FK
Sbjct:  387 ISSTKSMMGHTLGAAGGLEAIVCAKVIKTGWVPPTLNLEQPDLDDGCDLDYTPNKAVKLERVRAAISDNLGFGGHNAALVFK 468          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S1GZB6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GZB6_HEMAN)

HSP 1 Score: 113 bits (283), Expect = 4.990e-30
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGE-----KPKFAISDNLGFGGHNAALTFK 240
            ISSTKS+MGHTL  AGGLEA VCA+V++ G IPPT NL+NP +EDGCDL+Y P E     + + AISDNLGFGGHNAAL F+
Sbjct:  101 ISSTKSVMGHTLAGAGGLEAAVCAKVIKTGVIPPTVNLDNPDIEDGCDLDYTPRESVTMDRVRAAISDNLGFGGHNAALVFR 182          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S1DVF7_HEMAN (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DVF7_HEMAN)

HSP 1 Score: 113 bits (283), Expect = 7.740e-28
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGE-----KPKFAISDNLGFGGHNAALTFK 240
            ISSTKS+MGHTL  AGGLEA VCA+V++ G IPPT NL+NP +EDGCDL+Y P E     + + AISDNLGFGGHNAAL F+
Sbjct:  397 ISSTKSVMGHTLAGAGGLEAAVCAKVIKTGVIPPTVNLDNPDIEDGCDLDYTPRESVTMDRVRAAISDNLGFGGHNAALVFR 478          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S0HBR4_9CRYP (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HBR4_9CRYP)

HSP 1 Score: 108 bits (269), Expect = 7.370e-27
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPG-----EKPKFAISDNLGFGGHNAALTFK 240
            ISSTKSM+GH LGAAGGLEA++CA+V++ G IPPT N + P +EDGCDL+Y        E+ + AISDNLGFGGHNAA+ FK
Sbjct:  210 ISSTKSMIGHCLGAAGGLEAVICAKVVKTGWIPPTLNCDEPDIEDGCDLDYTRHKAVKMERVRAAISDNLGFGGHNAAIVFK 291          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S0STP5_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STP5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.200e-26
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPG--------EKPKFAISDNLGFGGHNAALTFK 240
            ISS KSM+GH+LGAAG +EA+VCAQ+L  G +PPT NL+NP +E GCDL+Y P         + PK  ISDNLGFGGHNAAL FK
Sbjct:  372 ISSIKSMIGHSLGAAGAIEAVVCAQILDQGIVPPTINLDNPDIEAGCDLDYVPNVAHHYAKADIPKVVISDNLGFGGHNAALAFK 456          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A6S9RH85_CHRCT (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RH85_CHRCT)

HSP 1 Score: 107 bits (266), Expect = 1.790e-25
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPG-----EKPKFAISDNLGFGGHNAALTFK 240
            +SSTKSM GHTLGAAGG+EA VC ++++ G++PPT N  NP  +  CDLNY P      EKP+ AISDNLGFGGHNAAL FK
Sbjct:  390 VSSTKSMTGHTLGAAGGIEAAVCVKMMQTGDVPPTINYNNP--DPDCDLNYVPNQAIKIEKPRAAISDNLGFGGHNAALVFK 469          
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Match: A0A7S4PIL2_GUITH (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PIL2_GUITH)

HSP 1 Score: 106 bits (265), Expect = 3.000e-25
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   10 ISSTKSMMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPG-----EKPKFAISDNLGFGGHNAALTFK 240
            ISSTKSM+GH LGAAGGLEA++CA+ ++ G IPPT N + P +EDGCDL+Y        E+ + AISDNLGFGGHNAA+ FK
Sbjct:  420 ISSTKSMIGHCLGAAGGLEAVICAKAVKTGWIPPTLNCDEPDIEDGCDLDYTRHKAVKMERVRAAISDNLGFGGHNAAIVFK 501          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52898.12614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ2_ECTSI4.200e-4590.70Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A836CDS1_9STRA1.830e-3473.26Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S1XSM4_9STRA3.230e-3172.623-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A7S0M182_9CRYP1.990e-3071.95Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S1GZB6_HEMAN4.990e-3067.07Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1DVF7_HEMAN7.740e-2867.07Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S0HBR4_9CRYP7.370e-2763.41Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S0STP5_9STRA1.200e-2662.353-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A6S9RH85_CHRCT1.790e-2563.41Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S4PIL2_GUITH3.000e-2562.20Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52898contigH-elongata_contig52898:848..1272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue8.9e-33
Seed eggNOG ortholog2880.D8LRQ2
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
EggNOG free text desc.3-oxoacyl-[acyl-carrier-protein] synthase activity
EggNOG OGsCOG0304@1,KOG1394@2759
EC2.3.1.179
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52898.12614.1prot_H-elongata_contig52898.12614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52898 848..1245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.0989978-CDS-H-elongata_contig52898:847..9101622930864.0989978-CDS-H-elongata_contig52898:847..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52898 848..910 -
1691679602.8916664-CDS-H-elongata_contig52898:847..9101691679602.8916664-CDS-H-elongata_contig52898:847..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52898 848..910 -
1622930864.1183887-CDS-H-elongata_contig52898:1095..12451622930864.1183887-CDS-H-elongata_contig52898:1095..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52898 1096..1245 -
1691679602.90475-CDS-H-elongata_contig52898:1095..12451691679602.90475-CDS-H-elongata_contig52898:1095..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52898 1096..1245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.1340191-UTR-H-elongata_contig52898:1245..12721622930864.1340191-UTR-H-elongata_contig52898:1245..1272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52898 1246..1272 -
1691679602.9266915-UTR-H-elongata_contig52898:1245..12721691679602.9266915-UTR-H-elongata_contig52898:1245..1272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig52898 1246..1272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52898.12614.1

>prot_H-elongata_contig52898.12614.1 ID=prot_H-elongata_contig52898.12614.1|Name=mRNA_H-elongata_contig52898.12614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MMGHTLGAAGGLEAIVCAQVLRHGEIPPTKNLENPALEDGCDLNYCPGEK
PKFAISDNLGFGGHNAALTFK
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mRNA from alignment at H-elongata_contig52898:848..1272-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52898.12614.1 ID=mRNA_H-elongata_contig52898.12614.1|Name=mRNA_H-elongata_contig52898.12614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=425bp|location=Sequence derived from alignment at H-elongata_contig52898:848..1272- (Himanthalia elongata Himel1 dioecious)
CAGGTGTACATCAGCTCGACGAAATCGATGATGGGACACACCTTAGGTGC AGCGGGGGGGCTCGAAGCGATCGTCTGCGCTCAGGTGTTGAGGCACGGGG AGATACCGCCTACGAAAAATCTGGAAAACCCGGCACTAGAGGATGGCTGC GATCTCAACTACTGCCCGGGAGAAAAGGTGAGTCGAGAGAAATCTCTCAC GCCTCGGGCCGATGAGACTCATGCAGACAGGTAGACAGACAGATGCTTTT CAACGACCTTATCGATCTTGATTGAGTCATCACGACAGTCTTGCGATTTA TCGCCCGATTCTGTGCGTCACATTGTGCCACTCTACCGCGACAGGTCGTC CCGGCCGTGAAGCCAAAGTTTGCTATCAGCGACAACTTGGGTTTCGGAGG GCACAACGCGGCCCTGACCTTTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig52898:848..1272-

>mRNA_H-elongata_contig52898.12614.1 ID=mRNA_H-elongata_contig52898.12614.1|Name=mRNA_H-elongata_contig52898.12614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig52898:848..1272- (Himanthalia elongata Himel1 dioecious)
ATGATGGGACACACCTTAGGTGCAGCGGGGGGGCTCGAAGCGATCGTCTG
CGCTCAGGTGTTGAGGCACGGGGAGATACCGCCTACGAAAAATCTGGAAA
ACCCGGCACTAGAGGATGGCTGCGATCTCAACTACTGCCCGGGAGAAAAG
ATGATGGGACACACCTTAGGTGCAGCGGGGGGGCTCGAAGCGATCGTCTG
CGCTCAGGTGTTGAGGCACGGGGAGATACCGCCTACGAAAAATCTGGAAA
ACCCGGCACTAGAGGATGGCTGCGATCTCAACTACTGCCCGGGAGAAAAG
CCAAAGTTTGCTATCAGCGACAACTTGGGTTTCGGAGGGCACAACGCGGC
CCTGACCTTTAAGCCAAAGTTTGCTATCAGCGACAACTTGGGTTTCGGAG
GGCACAACGCGGCCCTGACCTTTAAG
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