mRNA_H-elongata_contig116020.1261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116020.1261.1
Unique NamemRNA_H-elongata_contig116020.1261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: D7FT91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT91_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.910e-31
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVRVGF 231
            +GKDRTGLV AL LA+LGVPD+AIVDDYA+S +AY++L D DAMVGALAQQDLDPD FLGAP HVME +LRF+RV +
Sbjct:  438 AGKDRTGLVVALTLAVLGVPDEAIVDDYAKSDSAYKQLADRDAMVGALAQQDLDPDTFLGAPPHVMEGVLRFIRVKY 514          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7R9WFP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WFP7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.380e-22
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVRVGF 231
            +GKDRTG++ A++L+ LGVPD++IV+DY+ S   Y E+DD  AMVGAL+Q++LDP  FLGAP HVM D L  +R  +
Sbjct:   67 AGKDRTGVIAAVLLSALGVPDESIVEDYSLSANVYAEMDDHTAMVGALSQRNLDPKTFLGAPPHVMRDTLVAIRENY 143          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S2EB38_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB38_TRICV)

HSP 1 Score: 90.9 bits (224), Expect = 1.110e-20
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVRVGF 231
            +GKDRTG++TA++L++LGVPD+ IV+DY  S   Y E++D  AMVGAL+Q+ LDP  FLGAP  VM D L  +R  +
Sbjct:  140 AGKDRTGMITAIILSVLGVPDEDIVEDYGLSANVYAEMNDHKAMVGALSQRSLDPKTFLGAPPQVMRDTLVALRENY 216          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S1H7P6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H7P6_HEMAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.370e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVR 222
            +GKDRTGLV  LVL+ LGV D++IV+DY  S + Y +L+D DAMVGAL QQ LDP+ FL APR VME  +R +R
Sbjct:  134 AGKDRTGLVAMLVLSTLGVDDESIVNDYVISDSVYADLNDKDAMVGALQQQQLDPERFLRAPRSVMESTMRLLR 207          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S1VK86_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VK86_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.440e-20
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVRVGF 231
            +GKDRTG++TA+VL++LGVPD++IV+DY+ S   Y E++D  AMVGAL+Q++L+P  FLGAP  VM D L+ +R  +
Sbjct:  337 AGKDRTGVITAIVLSLLGVPDESIVEDYSMSANVYAEMNDHSAMVGALSQRNLNPKTFLGAPPQVMRDTLQSIREDY 413          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S0VC71_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VC71_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 1.590e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVR 222
            +GKDRTGLV  LVL+ LGV D++IV DY  S + YR+L+D DAMVGAL QQ LDP+ FL APR VM+  +R +R
Sbjct:  205 AGKDRTGLVAMLVLSTLGVDDESIVSDYVLSDSVYRDLNDSDAMVGALQQQQLDPERFLRAPRSVMDATMRLLR 278          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S1VXA0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXA0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.310e-20
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVR 222
            +GKDRTG++TAL+L++LGVPD+ IV+DY+ S   Y E++D  AMVGAL+Q++LDP  FLGAP  VM D L  +R
Sbjct:  388 AGKDRTGMITALILSVLGVPDEDIVEDYSLSANVYAEMNDHKAMVGALSQRNLDPKTFLGAPPSVMRDTLAGIR 461          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S1EEI9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EEI9_HEMAN)

HSP 1 Score: 90.5 bits (223), Expect = 4.470e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVR 222
            +GKDRTGLV  LVL+ LGV D++IV+DY  S + Y +L+D DAMVGAL QQ LDP+ FL APR VME  +R +R
Sbjct:  207 AGKDRTGLVAMLVLSTLGVDDESIVNDYVISDSVYADLNDKDAMVGALQQQQLDPERFLRAPRSVMESTMRLLR 280          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S2Y832_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y832_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.820e-20
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDIL 210
            +GKDRTG++TAL+L + GV  +AIV+DY  S   Y E++D  AMVGAL+Q+ LDP  FLGAP HVM+D L
Sbjct:   94 AGKDRTGVITALILKLCGVSTQAIVEDYTLSANVYAEMNDHQAMVGALSQRSLDPKTFLGAPAHVMQDTL 163          
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Match: A0A7S2I2F6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2F6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-19
Identity = 41/77 (53.25%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQQDLDPDIFLGAPRHVMEDILRFVRVGF 231
            +GKDRTG++ AL+L+++GVPD+ IV+DY+ S   Y E++D  AMVGAL+Q++LDP  FLGAP  VM +IL  +R  +
Sbjct:  384 AGKDRTGMIAALILSLIGVPDEDIVEDYSLSANVYAEMNDHKAMVGALSQRNLDPKTFLGAPPSVMREILEGIRENY 460          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116020.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT91_ECTSI5.910e-3175.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9WFP7_9STRA1.380e-2255.84Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2EB38_TRICV1.110e-2054.55Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1H7P6_HEMAN1.370e-2060.81Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1VK86_9STRA1.440e-2054.55Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0VC71_9CRYP1.590e-2060.81Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1VXA0_9STRA3.310e-2058.11Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S1EEI9_HEMAN4.470e-2060.81Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2Y832_9STRA4.820e-2058.57Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2I2F6_9STRA1.170e-1953.25Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116020contigH-elongata_contig116020:1197..1819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D7FT91
EggNOG free text desc.Pfam:Y_phosphatase3C
EggNOG OGs2AP1J@1,2RZFS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.617894-CDS-H-elongata_contig116020:1196..13461622929673.617894-CDS-H-elongata_contig116020:1196..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116020 1197..1346 +
1691679114.5236034-CDS-H-elongata_contig116020:1196..13461691679114.5236034-CDS-H-elongata_contig116020:1196..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116020 1197..1346 +
1622929673.6371136-CDS-H-elongata_contig116020:1738..18191622929673.6371136-CDS-H-elongata_contig116020:1738..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116020 1739..1819 +
1691679114.537546-CDS-H-elongata_contig116020:1738..18191691679114.537546-CDS-H-elongata_contig116020:1738..1819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116020 1739..1819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116020.1261.1prot_H-elongata_contig116020.1261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116020 1197..1819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116020.1261.1

>prot_H-elongata_contig116020.1261.1 ID=prot_H-elongata_contig116020.1261.1|Name=mRNA_H-elongata_contig116020.1261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
SGKDRTGLVTALVLAILGVPDKAIVDDYARSGAAYRELDDGDAMVGALAQ
QDLDPDIFLGAPRHVMEDILRFVRVGF
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mRNA from alignment at H-elongata_contig116020:1197..1819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116020.1261.1 ID=mRNA_H-elongata_contig116020.1261.1|Name=mRNA_H-elongata_contig116020.1261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=623bp|location=Sequence derived from alignment at H-elongata_contig116020:1197..1819+ (Himanthalia elongata Himel1 dioecious)
TCAGGCAAGGACCGTACGGGTTTGGTAACCGCACTGGTGTTGGCCATCCT TGGCGTGCCGGACAAGGCGATCGTGGATGACTATGCACGGTCGGGCGCTG CATACAGGGAGCTCGATGACGGGGATGCGATGGTCGGCGCGCTTGCCCAG GTGCCTCCGTCCACCTAACAAACAAAAAACAAAACAAAACAAAGATGGTA TCGAGTCCCTCGCACACAAGAAGATCGGTGATGGTATTTTGTAAAGCACC CGAAAGCGGCCGTGTTTGTGATATTTATTTTCTGGTGAATATACTATAAT AATGTTGCGACGTGGTTCATTTGTCGTATATGATATACAGCAGCCTAAAG TCTTTCAAATAAAAATAATGCTTTTTAGAATTTTATCTATTGTCCGAGAT GTTTTCCTCTTACTCTTACTCTCTGGCTGCTTCTATCTGGGCGTTGGCTT TTCTTGAATCGTTTTTCTTTTTCTTTTTTTTTGTTCCAACTTTTTTTCTT CATTTTATTTATTTATTTTTTTTATTTCCGGCGGCGCTGTAGCAAGATTT GGATCCTGATATATTTCTCGGCGCTCCGCGGCACGTCATGGAGGACATCC TTCGCTTCGTACGGGTGGGTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig116020:1197..1819+

>mRNA_H-elongata_contig116020.1261.1 ID=mRNA_H-elongata_contig116020.1261.1|Name=mRNA_H-elongata_contig116020.1261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig116020:1197..1819+ (Himanthalia elongata Himel1 dioecious)
TCAGGCAAGGACCGTACGGGTTTGGTAACCGCACTGGTGTTGGCCATCCT
TGGCGTGCCGGACAAGGCGATCGTGGATGACTATGCACGGTCGGGCGCTG
CATACAGGGAGCTCGATGACGGGGATGCGATGGTCGGCGCGCTTGCCCAG
TCAGGCAAGGACCGTACGGGTTTGGTAACCGCACTGGTGTTGGCCATCCT
TGGCGTGCCGGACAAGGCGATCGTGGATGACTATGCACGGTCGGGCGCTG
CATACAGGGAGCTCGATGACGGGGATGCGATGGTCGGCGCGCTTGCCCAG
CAAGATTTGGATCCTGATATATTTCTCGGCGCTCCGCGGCACGTCATGGA
GGACATCCTTCGCTTCGTACGGGTGGGTTTCCAAGATTTGGATCCTGATA
TATTTCTCGGCGCTCCGCGGCACGTCATGGAGGACATCCTTCGCTTCGTA
CGGGTGGGTTTC
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