prot_H-elongata_contig52870.12608.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig52870.12608.1
Unique Nameprot_H-elongata_contig52870.12608.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.300e-48
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 0
Query:    2 TRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            TRRDGR ANQIRPLA EQGILNRADGSARFVQGNTSVLAA YGPAPAKS RM+++EGA ++V F+PESG++S  DAE E LLRRSLEEV+LRSRYPR +VS++IQV
Sbjct:    4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQV 109          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 6.640e-27
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+  GPA AK  R +KA GA +EV F+ E G  S  D E E++LR + E +I+   +PR +VSI +QV
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQV 111          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.930e-26
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 0
Query:    5 DGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            DGR  +QIR L  +QGILNRADGS RF  GNTSVL A YGPA     + +K + A IEV +R + G  +  DAERE+ +RR+LEE +  +RYPR ++S+V+QV
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQV 110          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.810e-26
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+  GPA AK  R +K   A +EV F+PE G +S  D E E++LR++ E +IL   +PR ++S+ +QV
Sbjct:    8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQV 112          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: W4FVM2_9STRA (RNase_PH domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVM2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.960e-25
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSV+A+  GPA AK+ R +K + A +EV F+ + G  +  D E E++LR++ E V+    +PR ++S+ +QV
Sbjct:   11 REDGRLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 115          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.490e-24
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+  GPA AK  R +K + A +EV F+ E G  +  D E E +LR++ E ++    YPR ++SI +QV
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQV 112          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A8J4V0I1_9MYCE (RNase_PH domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V0I1_9MYCE)

HSP 1 Score: 101 bits (251), Expect = 4.040e-24
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR  NQIRP+  EQG+LN+ADGSA+F Q  +SVLAA YGP   K+ R +K   + +EV F P  G SS  D E+E+L+R ++E VIL + +PR  +++VIQV
Sbjct:    6 RLDGRFDNQIRPIETEQGLLNKADGSAKFTQNKSSVLAAVYGPIEVKNPRKEKILKSVVEVTFTPGLGNSSYQDKEKELLIRNAVESVILTTLHPRTQITVVIQV 110          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.090e-24
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR+  +IRPLA EQG+LNRADGSARF  G TSV+A+  GPAPAK  R +    A ++V F+ E G+++  D E E++LR++ E +IL   +PR ++SI +QV
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQV 608          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A151ZDL9_9MYCE (RNase_PH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL9_9MYCE)

HSP 1 Score: 99.8 bits (247), Expect = 1.140e-23
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 0
Query:    2 TRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            TR DGR  NQIR    EQ +LN+ADGSARF Q  +SVLAA YGP   K++R QK   + IEV F P  G ++ +D E+E+L++ +LE +IL + +PR  +SI+ QV
Sbjct:    4 TRNDGRLNNQIRAFESEQSLLNKADGSARFTQNKSSVLAAVYGPIEVKNSRKQKILKSLIEVSFTPSVGNTTYLDKEKELLIKNALESIILTTLHPRTQISIIFQV 109          
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.040e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0
Query:    3 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 107
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+  GPA AK  R +K + A +EV F+ + G  +  D E E +L+++ + ++    YPR ++SI +QV
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI4.300e-4878.30RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A067CJ13_SAPPC6.640e-2755.24Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A835ZF16_9STRA2.930e-2653.40Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A1V9ZII6_9STRA3.810e-2652.38Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
W4FVM2_9STRA6.960e-2547.62RNase_PH domain-containing protein n=2 Tax=Aphanom... [more]
A0A485KL27_9STRA3.490e-2450.48Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8J4V0I1_9MYCE4.040e-2451.43RNase_PH domain-containing protein n=1 Tax=Polysph... [more]
A0A1V9ZVY3_9STRA6.090e-2450.48U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A151ZDL9_9MYCE1.140e-2350.00RNase_PH domain-containing protein n=1 Tax=Tieghem... [more]
A0A024TBK6_9STRA4.040e-2347.62Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..107
e-value: 5.6E-29
score: 103.2
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 11..107
e-value: 5.1E-14
score: 52.9
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 1..107
NoneNo IPR availablePANTHERPTHR11953:SF1EXOSOME COMPLEX COMPONENT RRP46coord: 1..107
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52870contigH-elongata_contig52870:6..326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52870.12608.1mRNA_H-elongata_contig52870.12608.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig52870 6..326 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig52870.12608.1 ID=prot_H-elongata_contig52870.12608.1|Name=mRNA_H-elongata_contig52870.12608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MTRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKS
ARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCL
VSIVIQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold