mRNA_H-elongata_contig52870.12608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52870.12608.1
Unique NamemRNA_H-elongata_contig52870.12608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.300e-48
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    4 TRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            TRRDGR ANQIRPLA EQGILNRADGSARFVQGNTSVLAA YGPAPAKS RM+++EGA ++V F+PESG++S  DAE E LLRRSLEEV+LRSRYPR +VS++IQV
Sbjct:    4 TRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQV 109
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 6.640e-27
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR   +IRPLA EQG+LNRADGSARF  G TSVLA+  GPA AK  R +KA GA +EV F+ E G  S  D E E++LR + E +I+   +PR +VSI +QV
Sbjct:    7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQV 111
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.930e-26
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   13 DGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            DGR  +QIR L  +QGILNRADGS RF  GNTSVL A YGPA     + +K + A IEV +R + G  +  DAERE+ +RR+LEE +  +RYPR ++S+V+QV
Sbjct:    8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQV 110
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.810e-26
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR   +IRPLA EQG+LNRADGS+RF  G TSVLA+  GPA AK  R +K   A +EV F+PE G +S  D E E++LR++ E +IL   +PR ++S+ +QV
Sbjct:    8 REDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQV 112
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: W4FVM2_9STRA (RNase_PH domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVM2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.960e-25
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSV+A+  GPA AK+ R +K + A +EV F+ + G  +  D E E++LR++ E V+    +PR ++S+ +QV
Sbjct:   11 REDGRLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 115
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.490e-24
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR   +IRPL+ EQG+LNRADGSARF  G TSVLA+  GPA AK  R +K + A +EV F+ E G  +  D E E +LR++ E ++    YPR ++SI +QV
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQV 112
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A8J4V0I1_9MYCE (RNase_PH domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V0I1_9MYCE)

HSP 1 Score: 101 bits (251), Expect = 4.040e-24
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR  NQIRP+  EQG+LN+ADGSA+F Q  +SVLAA YGP   K+ R +K   + +EV F P  G SS  D E+E+L+R ++E VIL + +PR  +++VIQV
Sbjct:    6 RLDGRFDNQIRPIETEQGLLNKADGSAKFTQNKSSVLAAVYGPIEVKNPRKEKILKSVVEVTFTPGLGNSSYQDKEKELLIRNAVESVILTTLHPRTQITVVIQV 110
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.090e-24
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR+  +IRPLA EQG+LNRADGSARF  G TSV+A+  GPAPAK  R +    A ++V F+ E G+++  D E E++LR++ E +IL   +PR ++SI +QV
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQV 608
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A151ZDL9_9MYCE (RNase_PH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL9_9MYCE)

HSP 1 Score: 99.8 bits (247), Expect = 1.140e-23
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 TRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            TR DGR  NQIR    EQ +LN+ADGSARF Q  +SVLAA YGP   K++R QK   + IEV F P  G ++ +D E+E+L++ +LE +IL + +PR  +SI+ QV
Sbjct:    4 TRNDGRLNNQIRAFESEQSLLNKADGSARFTQNKSSVLAAVYGPIEVKNSRKQKILKSLIEVSFTPSVGNTTYLDKEKELLIKNALESIILTTLHPRTQISIIFQV 109
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BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.040e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:    7 RRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKSARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCLVSIVIQV 321
            R DGR   +IRPL+ EQG+LNRADGSARF  G+TSVLA+  GPA AK  R +K + A +EV F+ + G  +  D E E +L+++ + ++    YPR ++SI +QV
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQV 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52870.12608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI4.300e-4878.30RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A067CJ13_SAPPC6.640e-2755.24Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A835ZF16_9STRA2.930e-2653.40Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A1V9ZII6_9STRA3.810e-2652.38Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
W4FVM2_9STRA6.960e-2547.62RNase_PH domain-containing protein n=2 Tax=Aphanom... [more]
A0A485KL27_9STRA3.490e-2450.48Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8J4V0I1_9MYCE4.040e-2451.43RNase_PH domain-containing protein n=1 Tax=Polysph... [more]
A0A1V9ZVY3_9STRA6.090e-2450.48U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A151ZDL9_9MYCE1.140e-2350.00RNase_PH domain-containing protein n=1 Tax=Tieghem... [more]
A0A024TBK6_9STRA4.040e-2347.62Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52870contigH-elongata_contig52870:6..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.4e-37
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930863.4873898-CDS-H-elongata_contig52870:5..3261622930863.4873898-CDS-H-elongata_contig52870:5..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52870 6..326 +
1691679602.6399636-CDS-H-elongata_contig52870:5..3261691679602.6399636-CDS-H-elongata_contig52870:5..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52870 6..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52870.12608.1prot_H-elongata_contig52870.12608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52870 6..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52870.12608.1

>prot_H-elongata_contig52870.12608.1 ID=prot_H-elongata_contig52870.12608.1|Name=mRNA_H-elongata_contig52870.12608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MTRRDGRAANQIRPLAVEQGILNRADGSARFVQGNTSVLAAAYGPAPAKS
ARMQKAEGAAIEVKFRPESGMSSPVDAEREILLRRSLEEVILRSRYPRCL
VSIVIQV
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mRNA from alignment at H-elongata_contig52870:6..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52870.12608.1 ID=mRNA_H-elongata_contig52870.12608.1|Name=mRNA_H-elongata_contig52870.12608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig52870:6..326+ (Himanthalia elongata Himel1 dioecious)
ATGACGAGGCGAGACGGGCGCGCCGCCAATCAAATTCGACCGCTGGCTGT
CGAGCAAGGCATCCTCAACCGGGCGGACGGCTCGGCGCGATTTGTCCAGG
GCAATACTTCGGTCCTCGCGGCCGCCTACGGTCCTGCTCCCGCGAAGTCC
GCGCGAATGCAGAAGGCTGAAGGGGCTGCCATTGAAGTGAAATTCAGACC
AGAGAGTGGGATGTCGTCACCGGTCGATGCAGAGCGGGAGATTCTCCTCC
GGAGGTCGCTCGAGGAGGTGATCTTGCGATCTCGATATCCGAGATGTCTG
GTCTCTATTGTCATACAAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig52870:6..326+

>mRNA_H-elongata_contig52870.12608.1 ID=mRNA_H-elongata_contig52870.12608.1|Name=mRNA_H-elongata_contig52870.12608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig52870:6..326+ (Himanthalia elongata Himel1 dioecious)
ATGACGAGGCGAGACGGGCGCGCCGCCAATCAAATTCGACCGCTGGCTGT
CGAGCAAGGCATCCTCAACCGGGCGGACGGCTCGGCGCGATTTGTCCAGG
GCAATACTTCGGTCCTCGCGGCCGCCTACGGTCCTGCTCCCGCGAAGTCC
GCGCGAATGCAGAAGGCTGAAGGGGCTGCCATTGAAGTGAAATTCAGACC
AGAGAGTGGGATGTCGTCACCGGTCGATGCAGAGCGGGAGATTCTCCTCC
GGAGGTCGCTCGAGGAGGTGATCTTGCGATCTCGATATCCGAGATGTCTG
GTCTCTATTGTCATACAAGTGATGACGAGGCGAGACGGGCGCGCCGCCAA
TCAAATTCGACCGCTGGCTGTCGAGCAAGGCATCCTCAACCGGGCGGACG
GCTCGGCGCGATTTGTCCAGGGCAATACTTCGGTCCTCGCGGCCGCCTAC
GGTCCTGCTCCCGCGAAGTCCGCGCGAATGCAGAAGGCTGAAGGGGCTGC
CATTGAAGTGAAATTCAGACCAGAGAGTGGGATGTCGTCACCGGTCGATG
CAGAGCGGGAGATTCTCCTCCGGAGGTCGCTCGAGGAGGTGATCTTGCGA
TCTCGATATCCGAGATGTCTGGTCTCTATTGTCATACAAGTG
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